fix(onboarding): targets visibility + unified pipeline by default

The onboarding wizard created OnboardedTargets that were invisible in the
dashboard, and triggering a scan failed with "Repository <id> not found":
`/targets/{id}/scan` went through `run_scan`, which consulted the global
`unified_pipeline` flag and fell to the legacy repository pipeline (reads
`repositories`, not `onboarded_targets`).

Agent
- Add `ComplianceAgent::run_target_scan`, always dispatching to the unified
  `run_target` pipeline. The target-scan endpoint operates on
  `onboarded_targets` by construction, so it must not depend on the
  transition flag. `trigger_target_scan` now calls it.
- Default `UNIFIED_PIPELINE` to on (no legacy `repositories` data in prod);
  set `UNIFIED_PIPELINE=0` to opt back to the legacy pipeline.
- Scheduler now scans `onboarded_targets` (via `run_target_scan`) instead of
  the legacy `repositories` collection.

Dashboard
- New Targets page (`/targets`): lists onboarded targets with detected type,
  artifacts, findings count, applicable-scans matrix (on expand), plus Run
  scan and Delete. Sidebar "Repositories" nav becomes "Targets".
- Remove the "Add Repository" form from the Repositories page — onboarding
  is the single entry point (private-repo auth + issue tracker move into the
  onboarding flow, revisable on the target).
- Add `delete_target` server fn.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

.cargo/audit.toml

@@ -0,0 +1,23 @@
+[advisories]
+ignore = [
+    # hickory-proto 0.25.x pulled in transitively via mongodb → hickory-resolver.
+    # MongoDB 3.x has not yet released with hickory-resolver 0.26.x, so we cannot
+    # upgrade past this without a mongodb release. Both are DNS-layer DoS vectors
+    # requiring a MITM/controlled DNS server against MongoDB's hostname resolution —
+    # not a realistic attack surface here. Revisit when mongodb bumps hickory.
+    "RUSTSEC-2026-0118", # NSEC3 loop, no fix available upstream
+    "RUSTSEC-2026-0119", # O(n²) name compression, fixed in hickory-proto >=0.26.1
+
+    # rmcp 0.16.0 — DNS rebinding in Streamable HTTP server transport (missing
+    # Host header validation). Patched in rmcp >= 1.4.0, which is a major API
+    # version jump from our pin; rmcp shipped 0.x → 1.x → 2.x in three months
+    # and the migration touches every tool handler + the auth middleware we
+    # just landed in #92. Threat model in our deployment: the MCP server is
+    # exposed at a public hostname (comp-mcp-dev.meghsakha.com) behind orca's
+    # TLS-terminating ingress with per-tenant bearer auth — the attack model
+    # (browser DNS-rebinding into localhost MCP server) doesn't directly apply.
+    # Defense-in-depth Host-header check is still a worthwhile follow-up.
+    # FOLLOW-UP: bump rmcp to 2.x in a dedicated PR (M7.3 follow-up, sized
+    # multi-hour due to API surface change).
+    "RUSTSEC-2026-0189",
+]

.gitea/workflows/ci.yml

@@ -9,15 +9,33 @@ on:
 env:
   CARGO_TERM_COLOR: always
   RUSTFLAGS: "-D warnings"
-  # sccache caches compilation artifacts within a job so that compiling
-  # both --features server and --features web shares common crate work.
+  # Compile cache: sccache -> Hetzner S3 (breakpilot-sccache), runner-independent
+  # and persistent across CI runs (own key prefix). Reuses the shared cluster S3
+  # creds (same bucket as werkpilot). Requires repo secrets HETZNER_S3_ACCESS_KEY
+  # and HETZNER_S3_SECRET_KEY.
   RUSTC_WRAPPER: /usr/local/bin/sccache
-  SCCACHE_DIR: /tmp/sccache
+  SCCACHE_BUCKET: breakpilot-sccache
+  SCCACHE_ENDPOINT: https://nbg1.your-objectstorage.com
+  SCCACHE_REGION: auto
+  SCCACHE_S3_USE_SSL: "true"
+  SCCACHE_S3_KEY_PREFIX: compliance-scanner
+  AWS_ACCESS_KEY_ID: ${{ secrets.HETZNER_S3_ACCESS_KEY }}
+  AWS_SECRET_ACCESS_KEY: ${{ secrets.HETZNER_S3_SECRET_KEY }}
+  # compliance-agent depends on tramiton-core via git; use the system git so the
+  # credential rewrite below (see "Configure git auth ...") is honored on fetch.
+  CARGO_NET_GIT_FETCH_WITH_CLI: "true"
+  # Throttle cargo so a ~670-crate concurrent download burst doesn't 429 the
+  # Kellnr mirror: fewer concurrent connections (HTTP/1.1) + more retries.
+  CARGO_NET_RETRY: "10"
+  CARGO_HTTP_MULTIPLEXING: "false"
 
-# Cancel in-progress runs for the same branch/PR
+# Cancel superseded PR runs, but NEVER cancel main-branch runs — those build and
+# deploy per-service images, and cancelling one merge's deploy when the next
+# merge lands leaves a service un-deployed (as happened between two back-to-back
+# merges). So cancel-in-progress only for pull_request events.
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
-  cancel-in-progress: true
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
 
 jobs:
   # ---------------------------------------------------------------------------
@@ -36,16 +54,44 @@ jobs:
           git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
           git fetch --depth=1 origin "${GITHUB_SHA}"
           git checkout FETCH_HEAD
+      # Resolve crates.io deps through the self-hosted Kellnr mirror (cached,
+      # crates.io-independent). Git deps (tramiton-core) are unaffected — source
+      # replacement only applies to crates.io-sourced crates.
+      - name: Use Kellnr crates.io mirror
+        run: |
+          : "${CARGO_HOME:=/usr/local/cargo}"
+          mkdir -p "$CARGO_HOME"
+          {
+            echo '[source.crates-io]'
+            echo 'replace-with = "kellnr"'
+            echo '[registries.kellnr]'
+            echo 'index = "sparse+https://crates.meghsakha.com/api/v1/cratesio/"'
+          } >> "$CARGO_HOME/config.toml"
+        env:
+          RUSTC_WRAPPER: ""
       - name: Install tools
         run: |
           rustup component add rustfmt clippy
-          curl -fsSL https://github.com/mozilla/sccache/releases/download/v0.9.1/sccache-v0.9.1-x86_64-unknown-linux-musl.tar.gz \
-            | tar xz --strip-components=1 -C /usr/local/bin/ sccache-v0.9.1-x86_64-unknown-linux-musl/sccache
+          curl -fsSL https://github.com/mozilla/sccache/releases/download/v0.10.0/sccache-v0.10.0-x86_64-unknown-linux-musl.tar.gz \
+            | tar xz --strip-components=1 -C /usr/local/bin/ sccache-v0.10.0-x86_64-unknown-linux-musl/sccache
           chmod +x /usr/local/bin/sccache
           cargo install cargo-audit --locked
         env:
           RUSTC_WRAPPER: ""
 
+      # compliance-agent has a git dependency on tramiton-core (a private repo on
+      # this Gitea instance). Rewrite its SSH URL to HTTPS + a PAT so the runner
+      # can fetch it. Requires the repo secret TRAMITON_FETCH_TOKEN (a Gitea PAT
+      # with read:repository, owned by a user with access to sharang/tramiton).
+      # (Honored on fetch because CARGO_NET_GIT_FETCH_WITH_CLI=true uses system git.)
+      - name: Configure git auth for private tramiton dependency
+        run: |
+          git config --global \
+            url."https://sharang:${{ secrets.TRAMITON_FETCH_TOKEN }}@gitea.meghsakha.com/".insteadOf \
+            "ssh://git@gitea.meghsakha.com:22222/"
+        env:
+          RUSTC_WRAPPER: ""
+
       # Format (no compilation needed)
       - name: Format
         run: cargo fmt --all --check
@@ -70,7 +116,7 @@ jobs:
 
       # Tests (reuses compilation artifacts from clippy)
       - name: Tests (core + agent)
-        run: cargo test -p compliance-core -p compliance-agent
+        run: cargo test -p compliance-core -p compliance-agent --lib
       - name: Tests (dashboard server)
         run: cargo test -p compliance-dashboard --features server --no-default-features
       - name: Tests (dashboard web)
@@ -145,13 +191,25 @@ jobs:
     needs: [detect-changes]
     if: needs.detect-changes.outputs.agent == 'true'
     container:
-      image: alpine:latest
+      image: docker:27-cli
     steps:
-      - name: Trigger Coolify deploy
+      - name: Build, push and trigger orca redeploy
+        env:
+          # PAT for fetching the private tramiton-core git dependency during the
+          # image build (injected as a BuildKit secret, never baked into a layer).
+          TRAMITON_FETCH_TOKEN: ${{ secrets.TRAMITON_FETCH_TOKEN }}
         run: |
-          apk add --no-cache curl
-          curl -sf "${{ secrets.COOLIFY_WEBHOOK_AGENT }}" \
-            -H "Authorization: Bearer ${{ secrets.COOLIFY_TOKEN }}"
+          apk add --no-cache git curl openssl
+          git init && git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
+          git fetch --depth=1 origin "${GITHUB_SHA}" && git checkout FETCH_HEAD
+          IMAGE=registry.meghsakha.com/compliance-agent
+          echo "${{ secrets.REGISTRY_PASSWORD }}" | docker login registry.meghsakha.com -u "${{ secrets.REGISTRY_USERNAME }}" --password-stdin
+          DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN \
+            -f Dockerfile.agent -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
+          docker push "$IMAGE:latest" && docker push "$IMAGE:${GITHUB_SHA}"
+          PAYLOAD=$(printf '{"ref":"refs/heads/main","repository":{"full_name":"sharang/compliance-scanner-agent"},"head_commit":{"id":"%s","message":"deploy agent"}}' "${GITHUB_SHA}")
+          SIG=$(printf '%s' "$PAYLOAD" | openssl dgst -sha256 -hmac "${{ secrets.ORCA_WEBHOOK_SECRET }}" | awk '{print $2}')
+          RESP=$(curl -fsS -w "\nHTTP %{http_code}" -X POST "http://46.225.100.82:6880/api/v1/webhooks/github" -H "Content-Type: application/json" -H "X-Hub-Signature-256: sha256=$SIG" -d "$PAYLOAD"); echo "$RESP"
 
   deploy-dashboard:
     name: Deploy Dashboard
@@ -159,13 +217,23 @@ jobs:
     needs: [detect-changes]
     if: needs.detect-changes.outputs.dashboard == 'true'
     container:
-      image: alpine:latest
+      image: docker:27-cli
     steps:
-      - name: Trigger Coolify deploy
+      - name: Build, push and trigger orca redeploy
+        env:
+          TRAMITON_FETCH_TOKEN: ${{ secrets.TRAMITON_FETCH_TOKEN }}
         run: |
-          apk add --no-cache curl
-          curl -sf "${{ secrets.COOLIFY_WEBHOOK_DASHBOARD }}" \
-            -H "Authorization: Bearer ${{ secrets.COOLIFY_TOKEN }}"
+          apk add --no-cache git curl openssl
+          git init && git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
+          git fetch --depth=1 origin "${GITHUB_SHA}" && git checkout FETCH_HEAD
+          IMAGE=registry.meghsakha.com/compliance-dashboard
+          echo "${{ secrets.REGISTRY_PASSWORD }}" | docker login registry.meghsakha.com -u "${{ secrets.REGISTRY_USERNAME }}" --password-stdin
+          DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN \
+            -f Dockerfile.dashboard -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
+          docker push "$IMAGE:latest" && docker push "$IMAGE:${GITHUB_SHA}"
+          PAYLOAD=$(printf '{"ref":"refs/heads/main","repository":{"full_name":"sharang/compliance-scanner-agent"},"head_commit":{"id":"%s","message":"deploy dashboard"}}' "${GITHUB_SHA}")
+          SIG=$(printf '%s' "$PAYLOAD" | openssl dgst -sha256 -hmac "${{ secrets.ORCA_WEBHOOK_SECRET }}" | awk '{print $2}')
+          RESP=$(curl -fsS -w "\nHTTP %{http_code}" -X POST "http://46.225.100.82:6880/api/v1/webhooks/github" -H "Content-Type: application/json" -H "X-Hub-Signature-256: sha256=$SIG" -d "$PAYLOAD"); echo "$RESP"
 
   deploy-docs:
     name: Deploy Docs
@@ -173,13 +241,20 @@ jobs:
     needs: [detect-changes]
     if: needs.detect-changes.outputs.docs == 'true'
     container:
-      image: alpine:latest
+      image: docker:27-cli
     steps:
-      - name: Trigger Coolify deploy
+      - name: Build, push and trigger orca redeploy
         run: |
-          apk add --no-cache curl
-          curl -sf "${{ secrets.COOLIFY_WEBHOOK_DOCS }}" \
-            -H "Authorization: Bearer ${{ secrets.COOLIFY_TOKEN }}"
+          apk add --no-cache git curl openssl
+          git init && git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
+          git fetch --depth=1 origin "${GITHUB_SHA}" && git checkout FETCH_HEAD
+          IMAGE=registry.meghsakha.com/compliance-docs
+          echo "${{ secrets.REGISTRY_PASSWORD }}" | docker login registry.meghsakha.com -u "${{ secrets.REGISTRY_USERNAME }}" --password-stdin
+          docker build -f Dockerfile.docs -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
+          docker push "$IMAGE:latest" && docker push "$IMAGE:${GITHUB_SHA}"
+          PAYLOAD=$(printf '{"ref":"refs/heads/main","repository":{"full_name":"sharang/compliance-scanner-agent"},"head_commit":{"id":"%s","message":"deploy docs"}}' "${GITHUB_SHA}")
+          SIG=$(printf '%s' "$PAYLOAD" | openssl dgst -sha256 -hmac "${{ secrets.ORCA_WEBHOOK_SECRET }}" | awk '{print $2}')
+          RESP=$(curl -fsS -w "\nHTTP %{http_code}" -X POST "http://46.225.100.82:6880/api/v1/webhooks/github" -H "Content-Type: application/json" -H "X-Hub-Signature-256: sha256=$SIG" -d "$PAYLOAD"); echo "$RESP"
 
   deploy-mcp:
     name: Deploy MCP
@@ -187,10 +262,20 @@ jobs:
     needs: [detect-changes]
     if: needs.detect-changes.outputs.mcp == 'true'
     container:
-      image: alpine:latest
+      image: docker:27-cli
     steps:
-      - name: Trigger Coolify deploy
+      - name: Build, push and trigger orca redeploy
+        env:
+          TRAMITON_FETCH_TOKEN: ${{ secrets.TRAMITON_FETCH_TOKEN }}
         run: |
-          apk add --no-cache curl
-          curl -sf "${{ secrets.COOLIFY_WEBHOOK_MCP }}" \
-            -H "Authorization: Bearer ${{ secrets.COOLIFY_TOKEN }}"
+          apk add --no-cache git curl openssl
+          git init && git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
+          git fetch --depth=1 origin "${GITHUB_SHA}" && git checkout FETCH_HEAD
+          IMAGE=registry.meghsakha.com/compliance-mcp
+          echo "${{ secrets.REGISTRY_PASSWORD }}" | docker login registry.meghsakha.com -u "${{ secrets.REGISTRY_USERNAME }}" --password-stdin
+          DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN \
+            -f Dockerfile.mcp -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
+          docker push "$IMAGE:latest" && docker push "$IMAGE:${GITHUB_SHA}"
+          PAYLOAD=$(printf '{"ref":"refs/heads/main","repository":{"full_name":"sharang/compliance-scanner-agent"},"head_commit":{"id":"%s","message":"deploy mcp"}}' "${GITHUB_SHA}")
+          SIG=$(printf '%s' "$PAYLOAD" | openssl dgst -sha256 -hmac "${{ secrets.ORCA_WEBHOOK_SECRET }}" | awk '{print $2}')
+          RESP=$(curl -fsS -w "\nHTTP %{http_code}" -X POST "http://46.225.100.82:6880/api/v1/webhooks/github" -H "Content-Type: application/json" -H "X-Hub-Signature-256: sha256=$SIG" -d "$PAYLOAD"); echo "$RESP"

.gitea/workflows/nightly.yml

@@ -0,0 +1,52 @@
+name: Nightly E2E Tests
+
+on:
+  schedule:
+    - cron: '0 3 * * *'  # 3 AM UTC daily
+  workflow_dispatch:       # Allow manual trigger
+
+env:
+  CARGO_TERM_COLOR: always
+  RUSTFLAGS: "-D warnings"
+  RUSTC_WRAPPER: /usr/local/bin/sccache
+  SCCACHE_DIR: /tmp/sccache
+  TEST_MONGODB_URI: "mongodb://root:example@mongo:27017/?authSource=admin"
+
+concurrency:
+  group: nightly-e2e
+  cancel-in-progress: true
+
+jobs:
+  e2e:
+    name: E2E Tests
+    runs-on: docker
+    container:
+      image: rust:1.94-bookworm
+    services:
+      mongo:
+        image: mongo:7
+        env:
+          MONGO_INITDB_ROOT_USERNAME: root
+          MONGO_INITDB_ROOT_PASSWORD: example
+    steps:
+      - name: Checkout
+        run: |
+          git init
+          git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
+          git fetch --depth=1 origin "${GITHUB_SHA:-refs/heads/main}"
+          git checkout FETCH_HEAD
+
+      - name: Install sccache
+        run: |
+          curl -fsSL https://github.com/mozilla/sccache/releases/download/v0.9.1/sccache-v0.9.1-x86_64-unknown-linux-musl.tar.gz \
+            | tar xz --strip-components=1 -C /usr/local/bin/ sccache-v0.9.1-x86_64-unknown-linux-musl/sccache
+          chmod +x /usr/local/bin/sccache
+        env:
+          RUSTC_WRAPPER: ""
+
+      - name: Run E2E tests
+        run: cargo test -p compliance-agent --test e2e -- --test-threads=4
+
+      - name: Show sccache stats
+        run: sccache --show-stats
+        if: always()

Cargo.lock

@@ -676,6 +676,7 @@ dependencies = [
  "jsonwebtoken",
  "mongodb",
  "octocrab",
+ "rand 0.9.2",
  "regex",
  "reqwest",
  "secrecy",
@@ -687,9 +688,11 @@ dependencies = [
  "tokio-cron-scheduler",
  "tokio-stream",
  "tokio-tungstenite 0.26.2",
+ "tower",
  "tower-http",
  "tracing",
  "tracing-subscriber",
+ "tramiton-core",
  "urlencoding",
  "uuid",
  "walkdir",
@@ -700,19 +703,23 @@ dependencies = [
 name = "compliance-core"
 version = "0.1.0"
 dependencies = [
+ "axum",
  "bson",
  "chrono",
  "hex",
+ "jsonwebtoken",
  "mongodb",
  "opentelemetry",
  "opentelemetry-appender-tracing",
  "opentelemetry-otlp",
  "opentelemetry_sdk",
+ "reqwest",
  "secrecy",
  "serde",
  "serde_json",
  "sha2",
  "thiserror 2.0.18",
+ "tokio",
  "tracing",
  "tracing-opentelemetry",
  "tracing-subscriber",
@@ -813,12 +820,15 @@ dependencies = [
  "bson",
  "chrono",
  "compliance-core",
+ "dashmap",
  "dotenvy",
+ "hex",
  "mongodb",
  "rmcp",
  "schemars 1.2.1",
  "serde",
  "serde_json",
+ "sha2",
  "thiserror 2.0.18",
  "tokio",
  "tower-http",
@@ -826,6 +836,20 @@ dependencies = [
  "tracing-subscriber",
 ]
 
+[[package]]
+name = "compliance-smoke"
+version = "0.1.0"
+dependencies = [
+ "axum",
+ "compliance-core",
+ "reqwest",
+ "serde",
+ "serde_json",
+ "tokio",
+ "tracing",
+ "tracing-subscriber",
+]
+
 [[package]]
 name = "console_error_panic_hook"
 version = "0.1.7"
@@ -1095,9 +1119,9 @@ dependencies = [
 
 [[package]]
 name = "crossbeam-epoch"
-version = "0.9.18"
+version = "0.9.20"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5b82ac4a3c2ca9c3460964f020e1402edd5753411d7737aa39c3714ad1b5420e"
+checksum = "2d6914041f254d6e9176c01941b21115dcfb7089e55135a35411081bd106ef3f"
 dependencies = [
  "crossbeam-utils",
 ]
@@ -3524,9 +3548,9 @@ checksum = "224484c5d09285a7b8cb0a0c117e847ebd14cb6e4470ecf68cdb89c503b0edb9"
 
 [[package]]
 name = "mongodb"
-version = "3.5.1"
+version = "3.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "803dd859e8afa084c255a8effd8000ff86f7c8076a50cd6d8c99e8f3496f75c2"
+checksum = "1ef2c933617431ad0246fb5b43c425ebdae18c7f7259c87de0726d93b0e7e91b"
 dependencies = [
  "base64",
  "bitflags",
@@ -3570,9 +3594,9 @@ dependencies = [
 
 [[package]]
 name = "mongodb-internal-macros"
-version = "3.5.1"
+version = "3.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a973ef3dd3dbc6f6e65bbdecfd9ec5e781b9e7493b0f369a7c62e35d8e5ae2c8"
+checksum = "9e5758dc828eb2d02ec30563cba365609d56ddd833190b192beaee2b475a7bb3"
 dependencies = [
  "macro_magic",
  "proc-macro2",
@@ -4174,7 +4198,7 @@ version = "3.4.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "219cb19e96be00ab2e37d6e299658a0cfa83e52429179969b0f0121b4ac46983"
 dependencies = [
- "toml_edit",
+ "toml_edit 0.23.10+spec-1.0.0",
 ]
 
 [[package]]
@@ -4259,9 +4283,9 @@ dependencies = [
 
 [[package]]
 name = "quinn-proto"
-version = "0.11.14"
+version = "0.11.15"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "434b42fec591c96ef50e21e886936e66d3cc3f737104fdb9b737c40ffb94c098"
+checksum = "4fcb935c5bec503c2f0e306bdd3e58bb9029dcb14fa8d9ac76e3a5256ac0763e"
 dependencies = [
  "bytes",
  "getrandom 0.3.4",
@@ -4699,9 +4723,9 @@ dependencies = [
 
 [[package]]
 name = "rustls-webpki"
-version = "0.103.9"
+version = "0.103.13"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d7df23109aa6c1567d1c575b9952556388da57401e4ace1d15f79eedad0d8f53"
+checksum = "61c429a8649f110dddef65e2a5ad240f747e85f7758a6bccc7e5777bd33f756e"
 dependencies = [
  "ring",
  "rustls-pki-types",
@@ -4973,6 +4997,15 @@ dependencies = [
  "syn",
 ]
 
+[[package]]
+name = "serde_spanned"
+version = "0.6.9"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "bf41e0cfaf7226dca15e8197172c295a782857fcb97fad1808a166870dee75a3"
+dependencies = [
+ "serde",
+]
+
 [[package]]
 name = "serde_urlencoded"
 version = "0.7.1"
@@ -5171,7 +5204,7 @@ version = "0.8.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c1c97747dbf44bb1ca44a561ece23508e99cb592e862f22222dcf42f51d1e451"
 dependencies = [
- "heck 0.5.0",
+ "heck 0.4.1",
  "proc-macro2",
  "quote",
  "syn",
@@ -5787,6 +5820,27 @@ dependencies = [
  "tokio",
 ]
 
+[[package]]
+name = "toml"
+version = "0.8.23"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "dc1beb996b9d83529a9e75c17a1686767d148d70663143c7854d8b4a09ced362"
+dependencies = [
+ "serde",
+ "serde_spanned",
+ "toml_datetime 0.6.11",
+ "toml_edit 0.22.27",
+]
+
+[[package]]
+name = "toml_datetime"
+version = "0.6.11"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "22cddaf88f4fbc13c51aebbf5f8eceb5c7c5a9da2ac40a13519eb5b0a0e8f11c"
+dependencies = [
+ "serde",
+]
+
 [[package]]
 name = "toml_datetime"
 version = "0.7.5+spec-1.1.0"
@@ -5796,6 +5850,20 @@ dependencies = [
  "serde_core",
 ]
 
+[[package]]
+name = "toml_edit"
+version = "0.22.27"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "41fe8c660ae4257887cf66394862d21dbca4a6ddd26f04a3560410406a2f819a"
+dependencies = [
+ "indexmap 2.13.0",
+ "serde",
+ "serde_spanned",
+ "toml_datetime 0.6.11",
+ "toml_write",
+ "winnow",
+]
+
 [[package]]
 name = "toml_edit"
 version = "0.23.10+spec-1.0.0"
@@ -5803,7 +5871,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "84c8b9f757e028cee9fa244aea147aab2a9ec09d5325a9b01e0a49730c2b5269"
 dependencies = [
  "indexmap 2.13.0",
- "toml_datetime",
+ "toml_datetime 0.7.5+spec-1.1.0",
  "toml_parser",
  "winnow",
 ]
@@ -5817,6 +5885,12 @@ dependencies = [
  "winnow",
 ]
 
+[[package]]
+name = "toml_write"
+version = "0.1.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "5d99f8c9a7727884afe522e9bd5edbfc91a3312b36a77b5fb8926e4c31a41801"
+
 [[package]]
 name = "tonic"
 version = "0.12.3"
@@ -6063,6 +6137,18 @@ dependencies = [
  "wasm-bindgen",
 ]
 
+[[package]]
+name = "tramiton-core"
+version = "0.4.0"
+source = "git+ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git?tag=v0.4.0#e3dc1bf7027a2f6d7b1fe43043d6dfa887ce4af3"
+dependencies = [
+ "serde",
+ "tempfile",
+ "thiserror 1.0.69",
+ "toml",
+ "walkdir",
+]
+
 [[package]]
 name = "tree-sitter"
 version = "0.24.7"

Cargo.toml

@@ -6,6 +6,7 @@ members = [
     "compliance-graph",
     "compliance-dast",
     "compliance-mcp",
+    "compliance-smoke",
 ]
 resolver = "2"
 
@@ -33,3 +34,5 @@ zip = { version = "2", features = ["aes-crypto", "deflate"] }
 dashmap = "6"
 tokio-stream = { version = "0.1", features = ["sync"] }
 aes-gcm = "0.10"
+rand = "0.9"
+base64 = "0.22"

Dockerfile.agent

@@ -2,7 +2,16 @@ FROM rust:1.94-bookworm AS builder
 
 WORKDIR /app
 COPY . .
-RUN cargo build --release -p compliance-agent
+# compliance-agent depends on the private tramiton-core git repo. Authenticate
+# the fetch with a PAT passed as a BuildKit secret (never baked into a layer).
+# Build with: DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN ...
+RUN --mount=type=secret,id=tramiton_token \
+    if [ -s /run/secrets/tramiton_token ]; then \
+      git config --global \
+        url."https://sharang:$(cat /run/secrets/tramiton_token)@gitea.meghsakha.com/".insteadOf \
+        "ssh://git@gitea.meghsakha.com:22222/"; \
+    fi && \
+    CARGO_NET_GIT_FETCH_WITH_CLI=true cargo build --release -p compliance-agent
 
 FROM debian:bookworm-slim
 RUN apt-get update && apt-get install -y ca-certificates libssl3 git curl python3 python3-pip npm golang-go php-cli && rm -rf /var/lib/apt/lists/*
@@ -33,9 +42,15 @@ RUN pip3 install --break-system-packages ruff
 
 COPY --from=builder /app/target/release/compliance-agent /usr/local/bin/compliance-agent
 
+# Copy documentation for the help chat assistant
+COPY --from=builder /app/README.md /app/README.md
+COPY --from=builder /app/docs /app/docs
+ENV HELP_DOCS_PATH=/app
+
 # Ensure SSH key directory exists
 RUN mkdir -p /data/compliance-scanner/ssh
 
 EXPOSE 3001 3002
 
 ENTRYPOINT ["compliance-agent"]
+

Dockerfile.dashboard

@@ -1,13 +1,22 @@
 FROM rust:1.94-bookworm AS builder
 
-RUN cargo install dioxus-cli --version 0.7.3
+RUN cargo install dioxus-cli --version 0.7.3 --locked
 
 ARG DOCS_URL=/docs
 
 WORKDIR /app
 COPY . .
 ENV DOCS_URL=${DOCS_URL}
-RUN dx build --release --package compliance-dashboard
+# compliance-agent (a workspace member) depends on the private tramiton-core git
+# repo, so the workspace resolve needs it even to build the dashboard.
+# Authenticate the fetch with a PAT passed as a BuildKit secret.
+RUN --mount=type=secret,id=tramiton_token \
+    if [ -s /run/secrets/tramiton_token ]; then \
+      git config --global \
+        url."https://sharang:$(cat /run/secrets/tramiton_token)@gitea.meghsakha.com/".insteadOf \
+        "ssh://git@gitea.meghsakha.com:22222/"; \
+    fi && \
+    CARGO_NET_GIT_FETCH_WITH_CLI=true dx build --release --package compliance-dashboard
 
 FROM debian:bookworm-slim
 RUN apt-get update && apt-get install -y ca-certificates libssl3 && rm -rf /var/lib/apt/lists/*
@@ -20,3 +29,4 @@ ENV IP=0.0.0.0
 EXPOSE 8080
 
 ENTRYPOINT ["./compliance-dashboard"]
+

Dockerfile.docs

@@ -12,3 +12,4 @@ RUN rm /etc/nginx/conf.d/default.conf
 COPY docs/nginx.conf /etc/nginx/conf.d/default.conf
 COPY --from=builder /app/.vitepress/dist /usr/share/nginx/html
 EXPOSE 80
+

Dockerfile.mcp

@@ -2,7 +2,16 @@ FROM rust:1.94-bookworm AS builder
 
 WORKDIR /app
 COPY . .
-RUN cargo build --release -p compliance-mcp
+# compliance-agent (a workspace member) depends on the private tramiton-core git
+# repo, so the workspace resolve needs it even to build the mcp binary.
+# Authenticate the fetch with a PAT passed as a BuildKit secret.
+RUN --mount=type=secret,id=tramiton_token \
+    if [ -s /run/secrets/tramiton_token ]; then \
+      git config --global \
+        url."https://sharang:$(cat /run/secrets/tramiton_token)@gitea.meghsakha.com/".insteadOf \
+        "ssh://git@gitea.meghsakha.com:22222/"; \
+    fi && \
+    CARGO_NET_GIT_FETCH_WITH_CLI=true cargo build --release -p compliance-mcp
 
 FROM debian:bookworm-slim
 RUN apt-get update && apt-get install -y ca-certificates libssl3 && rm -rf /var/lib/apt/lists/*
@@ -14,3 +23,4 @@ EXPOSE 8090
 ENV MCP_PORT=8090
 
 ENTRYPOINT ["compliance-mcp"]
+

README.md

@@ -28,9 +28,9 @@
 
 ## About
 
-Compliance Scanner is an autonomous agent that continuously monitors git repositories for security vulnerabilities, GDPR/OAuth compliance patterns, and dependency risks. It creates issues in external trackers (GitHub/GitLab/Jira) with evidence and remediation suggestions, reviews pull requests, and exposes a Dioxus-based dashboard for visualization.
+Compliance Scanner is an autonomous agent that continuously monitors git repositories for security vulnerabilities, GDPR/OAuth compliance patterns, and dependency risks. It creates issues in external trackers (GitHub/GitLab/Jira/Gitea) with evidence and remediation suggestions, reviews pull requests with multi-pass LLM analysis, runs autonomous penetration tests, and exposes a Dioxus-based dashboard for visualization.
 
-> **How it works:** The agent runs as a lazy daemon -- it only scans when new commits are detected, triggered by cron schedules or webhooks. LLM-powered triage filters out false positives and generates actionable remediation.
+> **How it works:** The agent runs as a lazy daemon -- it only scans when new commits are detected, triggered by cron schedules or webhooks. LLM-powered triage filters out false positives and generates actionable remediation with multi-language awareness.
 
 ## Features
 
@@ -41,31 +41,38 @@ Compliance Scanner is an autonomous agent that continuously monitors git reposit
 | **CVE Monitoring** | OSV.dev batch queries, NVD CVSS enrichment, SearXNG context |
 | **GDPR Patterns** | Detect PII logging, missing consent, hardcoded retention, missing deletion |
 | **OAuth Patterns** | Detect implicit grant, missing PKCE, token in localStorage, token in URLs |
-| **LLM Triage** | Confidence scoring via LiteLLM to filter false positives |
-| **Issue Creation** | Auto-create issues in GitHub, GitLab, or Jira with code evidence |
-| **PR Reviews** | Post security review comments on pull requests |
-| **Dashboard** | Fullstack Dioxus UI with findings, SBOM, issues, and statistics |
-| **Webhooks** | GitHub (HMAC-SHA256) and GitLab webhook receivers for push/PR events |
+| **LLM Triage** | Multi-language-aware confidence scoring (Rust, Python, Go, Java, Ruby, PHP, C++) |
+| **Issue Creation** | Auto-create issues in GitHub, GitLab, Jira, or Gitea with dedup via fingerprints |
+| **PR Reviews** | Multi-pass security review (logic, security, convention, complexity) with dedup |
+| **DAST Scanning** | Black-box security testing with endpoint discovery and parameter fuzzing |
+| **AI Pentesting** | Autonomous LLM-orchestrated penetration testing with encrypted reports |
+| **Code Graph** | Interactive code knowledge graph with impact analysis |
+| **AI Chat (RAG)** | Natural language Q&A grounded in repository source code |
+| **Help Assistant** | Documentation-grounded help chat accessible from every dashboard page |
+| **MCP Server** | Expose live security data to Claude, Cursor, and other AI tools |
+| **Dashboard** | Fullstack Dioxus UI with findings, SBOM, issues, DAST, pentest, and graph |
+| **Webhooks** | GitHub, GitLab, and Gitea webhook receivers for push/PR events |
+| **Finding Dedup** | SHA-256 fingerprint dedup for SAST, CWE-based dedup for DAST findings |
 
 ## Architecture
 
 ```
-┌─────────────────────────────────────────────────────────────┐
-│                    Cargo Workspace                           │
-├──────────────┬──────────────────┬───────────────────────────┤
-│ compliance-  │ compliance-      │ compliance-               │
-│ core         │ agent            │ dashboard                 │
-│ (lib)        │ (bin)            │ (bin, Dioxus 0.7.3)       │
-│              │                  │                           │
-│ Models       │ Scan Pipeline    │ Fullstack Web UI          │
-│ Traits       │ LLM Client      │ Server Functions           │
-│ Config       │ Issue Trackers   │ Charts + Tables           │
-│ Errors       │ Scheduler        │ Settings Page             │
-│              │ REST API         │                           │
-│              │ Webhooks         │                           │
-└──────────────┴──────────────────┴───────────────────────────┘
-                        │
-                   MongoDB (shared)
+┌──────────────────────────────────────────────────────────────────────────┐
+│                          Cargo Workspace                                 │
+├──────────────┬──────────────────┬──────────────┬──────────┬─────────────┤
+│ compliance-  │ compliance-      │ compliance-  │ complian-│ compliance- │
+│ core (lib)   │ agent (bin)      │ dashboard    │ ce-graph │ mcp (bin)   │
+│              │                  │ (bin)        │ (lib)    │             │
+│ Models       │ Scan Pipeline    │ Dioxus 0.7   │ Tree-    │ MCP Server  │
+│ Traits       │ LLM Client      │ Fullstack UI │ sitter   │ Live data   │
+│ Config       │ Issue Trackers   │ Help Chat    │ Graph    │ for AI      │
+│ Errors       │ Pentest Engine   │ Server Fns   │ Embedds  │ tools       │
+│              │ DAST Tools       │              │ RAG      │             │
+│              │ REST API         │              │          │             │
+│              │ Webhooks         │              │          │             │
+└──────────────┴──────────────────┴──────────────┴──────────┴─────────────┘
+                                 │
+                            MongoDB (shared)
 ```
 
 ## Scan Pipeline (7 Stages)
@@ -84,11 +91,16 @@ Compliance Scanner is an autonomous agent that continuously monitors git reposit
 |-------|-----------|
 | Shared Library | `compliance-core` -- models, traits, config |
 | Agent | Axum REST API, git2, tokio-cron-scheduler, Semgrep, Syft |
-| Dashboard | Dioxus 0.7.3 fullstack, Tailwind CSS |
+| Dashboard | Dioxus 0.7.3 fullstack, Tailwind CSS 4 |
+| Code Graph | `compliance-graph` -- tree-sitter parsing, embeddings, RAG |
+| MCP Server | `compliance-mcp` -- Model Context Protocol for AI tools |
+| DAST | `compliance-dast` -- dynamic application security testing |
 | Database | MongoDB with typed collections |
-| LLM | LiteLLM (OpenAI-compatible API) |
-| Issue Trackers | GitHub (octocrab), GitLab (REST v4), Jira (REST v3) |
+| LLM | LiteLLM (OpenAI-compatible API for chat, triage, embeddings) |
+| Issue Trackers | GitHub (octocrab), GitLab (REST v4), Jira (REST v3), Gitea |
 | CVE Sources | OSV.dev, NVD, SearXNG |
+| Auth | Keycloak (OAuth2/PKCE, SSO) |
+| Browser Automation | Chromium (headless, for pentesting and PDF generation) |
 
 ## Getting Started
 
@@ -151,20 +163,35 @@ The agent exposes a REST API on port 3001:
 | `GET` | `/api/v1/sbom` | List dependencies |
 | `GET` | `/api/v1/issues` | List cross-tracker issues |
 | `GET` | `/api/v1/scan-runs` | Scan execution history |
+| `GET` | `/api/v1/graph/:repo_id` | Code knowledge graph |
+| `POST` | `/api/v1/graph/:repo_id/build` | Trigger graph build |
+| `GET` | `/api/v1/dast/targets` | List DAST targets |
+| `POST` | `/api/v1/dast/targets` | Add DAST target |
+| `GET` | `/api/v1/dast/findings` | List DAST findings |
+| `POST` | `/api/v1/chat/:repo_id` | RAG-powered code chat |
+| `POST` | `/api/v1/help/chat` | Documentation-grounded help chat |
+| `POST` | `/api/v1/pentest/sessions` | Create pentest session |
+| `POST` | `/api/v1/pentest/sessions/:id/export` | Export encrypted pentest report |
 | `POST` | `/webhook/github` | GitHub webhook (HMAC-SHA256) |
 | `POST` | `/webhook/gitlab` | GitLab webhook (token verify) |
+| `POST` | `/webhook/gitea` | Gitea webhook |
 
 ## Dashboard Pages
 
 | Page | Description |
 |------|-------------|
-| **Overview** | Stat cards, severity distribution chart |
-| **Repositories** | Add/manage tracked repos, trigger scans |
-| **Findings** | Filterable table by severity, type, status |
+| **Overview** | Stat cards, severity distribution, AI chat cards, MCP status |
+| **Repositories** | Add/manage tracked repos, trigger scans, webhook config |
+| **Findings** | Filterable table by severity, type, status, scanner |
 | **Finding Detail** | Code evidence, remediation, suggested fix, linked issue |
-| **SBOM** | Dependency inventory with vulnerability badges |
-| **Issues** | Cross-tracker view (GitHub + GitLab + Jira) |
-| **Settings** | Configure LiteLLM, tracker tokens, SearXNG URL |
+| **SBOM** | Dependency inventory with vulnerability badges, license summary |
+| **Issues** | Cross-tracker view (GitHub + GitLab + Jira + Gitea) |
+| **Code Graph** | Interactive architecture visualization, impact analysis |
+| **AI Chat** | RAG-powered Q&A about repository code |
+| **DAST** | Dynamic scanning targets, findings, and scan history |
+| **Pentest** | AI-driven pentest sessions, attack chain visualization |
+| **MCP Servers** | Model Context Protocol server management |
+| **Help Chat** | Floating assistant (available on every page) for product Q&A |
 
 ## Project Structure
 
@@ -173,19 +200,24 @@ compliance-scanner/
 ├── compliance-core/        Shared library (models, traits, config, errors)
 ├── compliance-agent/       Agent daemon (pipeline, LLM, trackers, API, webhooks)
 │   └── src/
-│       ├── pipeline/       7-stage scan pipeline
-│       ├── llm/            LiteLLM client, triage, descriptions, fixes, PR review
-│       ├── trackers/       GitHub, GitLab, Jira integrations
-│       ├── api/            REST API (Axum)
-│       └── webhooks/       GitHub + GitLab webhook receivers
+│       ├── pipeline/       7-stage scan pipeline, dedup, PR reviews, code review
+│       ├── llm/            LiteLLM client, triage, descriptions, fixes, review prompts
+│       ├── trackers/       GitHub, GitLab, Jira, Gitea integrations
+│       ├── pentest/        AI-driven pentest orchestrator, tools, reports
+│       ├── rag/            RAG pipeline, chunking, embedding
+│       ├── api/            REST API (Axum), help chat
+│       └── webhooks/       GitHub, GitLab, Gitea webhook receivers
 ├── compliance-dashboard/   Dioxus fullstack dashboard
 │   └── src/
-│       ├── components/     Reusable UI components
-│       ├── infrastructure/ Server functions, DB, config
-│       └── pages/          Full page views
+│       ├── components/     Reusable UI (sidebar, help chat, attack chain, etc.)
+│       ├── infrastructure/ Server functions, DB, config, auth
+│       └── pages/          Full page views (overview, DAST, pentest, graph, etc.)
+├── compliance-graph/       Code knowledge graph (tree-sitter, embeddings, RAG)
+├── compliance-dast/        Dynamic application security testing
+├── compliance-mcp/         Model Context Protocol server
+├── docs/                   VitePress documentation site
 ├── assets/                 Static assets (CSS, icons)
-├── styles/                 Tailwind input stylesheet
-└── bin/                    Dashboard binary entrypoint
+└── styles/                 Tailwind input stylesheet
 ```
 
 ## External Services
@@ -193,10 +225,12 @@ compliance-scanner/
 | Service | Purpose | Default URL |
 |---------|---------|-------------|
 | MongoDB | Persistence | `mongodb://localhost:27017` |
-| LiteLLM | LLM proxy for triage and generation | `http://localhost:4000` |
+| LiteLLM | LLM proxy (chat, triage, embeddings) | `http://localhost:4000` |
 | SearXNG | CVE context search | `http://localhost:8888` |
+| Keycloak | Authentication (OAuth2/PKCE, SSO) | `http://localhost:8080` |
 | Semgrep | SAST scanning | CLI tool |
 | Syft | SBOM generation | CLI tool |
+| Chromium | Headless browser (pentesting, PDF) | Managed via Docker |
 
 ---
 

compliance-agent/Cargo.toml

@@ -7,9 +7,14 @@ edition = "2021"
 workspace = true
 
 [dependencies]
-compliance-core = { workspace = true, features = ["mongodb", "telemetry"] }
+compliance-core = { workspace = true, features = ["mongodb", "telemetry", "axum"] }
 compliance-graph = { path = "../compliance-graph" }
 compliance-dast = { path = "../compliance-dast" }
+# Native firmware build/target detection for bare-metal & RTOS artifacts.
+# Same-company IP, used directly (not via CLI) so the whole tramiton suite is
+# available to the onboarding classifier. NOTE: CI must be able to fetch this
+# private repo (see the git-auth step in .gitea/workflows/ci.yml).
+tramiton-core = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.0" }
 serde = { workspace = true }
 serde_json = { workspace = true }
 tokio = { workspace = true }
@@ -25,7 +30,7 @@ uuid = { workspace = true }
 secrecy = { workspace = true }
 regex = { workspace = true }
 axum = "0.8"
-tower-http = { version = "0.6", features = ["cors", "trace"] }
+tower-http = { version = "0.6", features = ["cors", "trace", "set-header"] }
 git2 = "0.20"
 octocrab = "0.44"
 tokio-cron-scheduler = "0.13"
@@ -42,3 +47,16 @@ tokio-tungstenite = { version = "0.26", features = ["rustls-tls-webpki-roots"] }
 futures-core = "0.3"
 dashmap = { workspace = true }
 tokio-stream = { workspace = true }
+rand = { workspace = true }
+
+[dev-dependencies]
+compliance-core = { workspace = true, features = ["mongodb", "axum"] }
+tower = { version = "0.5", features = ["util"] }
+reqwest = { workspace = true }
+serde_json = { workspace = true }
+tokio = { workspace = true }
+mongodb = { workspace = true }
+uuid = { workspace = true }
+secrecy = { workspace = true }
+axum = "0.8"
+tower-http = { version = "0.6", features = ["cors"] }

compliance-agent/src/agent.rs

@@ -6,7 +6,7 @@ use tokio::sync::{broadcast, watch, Semaphore};
 use compliance_core::models::pentest::PentestEvent;
 use compliance_core::AgentConfig;
 
-use crate::database::Database;
+use crate::database::DatabasePool;
 use crate::llm::LlmClient;
 use crate::pipeline::orchestrator::PipelineOrchestrator;
 
@@ -16,7 +16,10 @@ const DEFAULT_MAX_CONCURRENT_SESSIONS: usize = 5;
 #[derive(Clone)]
 pub struct ComplianceAgent {
     pub config: AgentConfig,
-    pub db: Database,
+    /// Per-tenant Mongo broker. Every code path must obtain a
+    /// tenant-scoped [`crate::database::Database`] from this pool —
+    /// there is no single shared database any more.
+    pub db_pool: DatabasePool,
     pub llm: Arc<LlmClient>,
     pub http: reqwest::Client,
     /// Per-session broadcast senders for SSE streaming.
@@ -28,18 +31,23 @@ pub struct ComplianceAgent {
 }
 
 impl ComplianceAgent {
-    pub fn new(config: AgentConfig, db: Database) -> Self {
+    pub fn new(config: AgentConfig, db_pool: DatabasePool) -> Self {
         let llm = Arc::new(LlmClient::new(
             config.litellm_url.clone(),
             config.litellm_api_key.clone(),
             config.litellm_model.clone(),
             config.litellm_embed_model.clone(),
         ));
+        let http = reqwest::Client::builder()
+            .timeout(std::time::Duration::from_secs(30))
+            .connect_timeout(std::time::Duration::from_secs(10))
+            .build()
+            .unwrap_or_default();
         Self {
             config,
-            db,
+            db_pool,
             llm,
-            http: reqwest::Client::new(),
+            http,
             session_streams: Arc::new(DashMap::new()),
             session_pause: Arc::new(DashMap::new()),
             session_semaphore: Arc::new(Semaphore::new(DEFAULT_MAX_CONCURRENT_SESSIONS)),
@@ -48,28 +56,51 @@ impl ComplianceAgent {
 
     pub async fn run_scan(
         &self,
+        tenant_id: &str,
         repo_id: &str,
         trigger: compliance_core::models::ScanTrigger,
     ) -> Result<(), crate::error::AgentError> {
-        let orchestrator = PipelineOrchestrator::new(
-            self.config.clone(),
-            self.db.clone(),
-            self.llm.clone(),
-            self.http.clone(),
-        );
-        orchestrator.run(repo_id, trigger).await
+        let db = self.db_pool.for_tenant_id(tenant_id).await?;
+        let orchestrator =
+            PipelineOrchestrator::new(self.config.clone(), db, self.llm.clone(), self.http.clone());
+        if self.config.unified_pipeline {
+            orchestrator.run_target(repo_id, trigger).await
+        } else {
+            orchestrator.run(repo_id, trigger).await
+        }
+    }
+
+    /// Run a scan for an onboarded target through the unified pipeline,
+    /// unconditionally.
+    ///
+    /// Unlike [`Self::run_scan`], this does *not* consult the
+    /// `unified_pipeline` transition flag: the caller (the `/targets/{id}/scan`
+    /// endpoint) operates on `onboarded_targets` by construction, so it must
+    /// always dispatch to `run_target` regardless of how the legacy paths
+    /// (scheduler, webhooks, `/repositories/{id}/scan`) are configured.
+    pub async fn run_target_scan(
+        &self,
+        tenant_id: &str,
+        target_id: &str,
+        trigger: compliance_core::models::ScanTrigger,
+    ) -> Result<(), crate::error::AgentError> {
+        let db = self.db_pool.for_tenant_id(tenant_id).await?;
+        let orchestrator =
+            PipelineOrchestrator::new(self.config.clone(), db, self.llm.clone(), self.http.clone());
+        orchestrator.run_target(target_id, trigger).await
     }
 
     /// Run a PR review: scan the diff and post review comments.
     pub async fn run_pr_review(
         &self,
+        tenant_id: &str,
         repo_id: &str,
         pr_number: u64,
         base_sha: &str,
         head_sha: &str,
     ) -> Result<(), crate::error::AgentError> {
-        let repo = self
-            .db
+        let db = self.db_pool.for_tenant_id(tenant_id).await?;
+        let repo = db
             .repositories()
             .find_one(mongodb::bson::doc! {
                 "_id": mongodb::bson::oid::ObjectId::parse_str(repo_id)
@@ -80,12 +111,8 @@ impl ComplianceAgent {
                 crate::error::AgentError::Other(format!("Repository {repo_id} not found"))
             })?;
 
-        let orchestrator = PipelineOrchestrator::new(
-            self.config.clone(),
-            self.db.clone(),
-            self.llm.clone(),
-            self.http.clone(),
-        );
+        let orchestrator =
+            PipelineOrchestrator::new(self.config.clone(), db, self.llm.clone(), self.http.clone());
         orchestrator
             .run_pr_review(&repo, repo_id, pr_number, base_sha, head_sha)
             .await

compliance-agent/src/api/auth_middleware.rs

@@ -1,113 +0,0 @@
-use std::sync::Arc;
-
-use axum::{
-    extract::Request,
-    middleware::Next,
-    response::{IntoResponse, Response},
-};
-use jsonwebtoken::{decode, decode_header, jwk::JwkSet, DecodingKey, Validation};
-use reqwest::StatusCode;
-use serde::Deserialize;
-use tokio::sync::RwLock;
-
-/// Cached JWKS from Keycloak for token validation.
-#[derive(Clone)]
-pub struct JwksState {
-    pub jwks: Arc<RwLock<Option<JwkSet>>>,
-    pub jwks_url: String,
-}
-
-#[derive(Debug, Deserialize)]
-struct Claims {
-    #[allow(dead_code)]
-    sub: String,
-}
-
-const PUBLIC_ENDPOINTS: &[&str] = &["/api/v1/health"];
-
-/// Middleware that validates Bearer JWT tokens against Keycloak's JWKS.
-///
-/// Skips validation for health check endpoints.
-/// If `JwksState` is not present as an extension (keycloak not configured),
-/// all requests pass through.
-pub async fn require_jwt_auth(request: Request, next: Next) -> Response {
-    let path = request.uri().path();
-
-    if PUBLIC_ENDPOINTS.contains(&path) {
-        return next.run(request).await;
-    }
-
-    let jwks_state = match request.extensions().get::<JwksState>() {
-        Some(s) => s.clone(),
-        None => return next.run(request).await,
-    };
-
-    let auth_header = match request.headers().get("authorization") {
-        Some(h) => h,
-        None => return (StatusCode::UNAUTHORIZED, "Missing authorization header").into_response(),
-    };
-
-    let token = match auth_header.to_str() {
-        Ok(s) if s.starts_with("Bearer ") => &s[7..],
-        _ => return (StatusCode::UNAUTHORIZED, "Invalid authorization header").into_response(),
-    };
-
-    match validate_token(token, &jwks_state).await {
-        Ok(()) => next.run(request).await,
-        Err(e) => {
-            tracing::warn!("JWT validation failed: {e}");
-            (StatusCode::UNAUTHORIZED, "Invalid token").into_response()
-        }
-    }
-}
-
-async fn validate_token(token: &str, state: &JwksState) -> Result<(), String> {
-    let header = decode_header(token).map_err(|e| format!("failed to decode JWT header: {e}"))?;
-
-    let kid = header
-        .kid
-        .ok_or_else(|| "JWT missing kid header".to_string())?;
-
-    let jwks = fetch_or_get_jwks(state).await?;
-
-    let jwk = jwks
-        .keys
-        .iter()
-        .find(|k| k.common.key_id.as_deref() == Some(&kid))
-        .ok_or_else(|| "no matching key found in JWKS".to_string())?;
-
-    let decoding_key =
-        DecodingKey::from_jwk(jwk).map_err(|e| format!("failed to create decoding key: {e}"))?;
-
-    let mut validation = Validation::new(header.alg);
-    validation.validate_exp = true;
-    validation.validate_aud = false;
-
-    decode::<Claims>(token, &decoding_key, &validation)
-        .map_err(|e| format!("token validation failed: {e}"))?;
-
-    Ok(())
-}
-
-async fn fetch_or_get_jwks(state: &JwksState) -> Result<JwkSet, String> {
-    {
-        let cached = state.jwks.read().await;
-        if let Some(ref jwks) = *cached {
-            return Ok(jwks.clone());
-        }
-    }
-
-    let resp = reqwest::get(&state.jwks_url)
-        .await
-        .map_err(|e| format!("failed to fetch JWKS: {e}"))?;
-
-    let jwks: JwkSet = resp
-        .json()
-        .await
-        .map_err(|e| format!("failed to parse JWKS: {e}"))?;
-
-    let mut cached = state.jwks.write().await;
-    *cached = Some(jwks.clone());
-
-    Ok(jwks)
-}

compliance-agent/src/api/handlers/admin.rs

@@ -0,0 +1,115 @@
+//! Cross-tenant admin endpoints (`/api/v1/admin/*`).
+//!
+//! Operator-only. Auth is a **static bearer token** (`ADMIN_API_TOKEN`
+//! env on the agent) — explicitly NOT a Keycloak JWT, because the
+//! whole point of these endpoints is to operate ACROSS tenants. A
+//! customer JWT (which always carries a single tenant_id) has no
+//! business mounting them.
+//!
+//! Routes are only registered when `ADMIN_API_TOKEN` is set. With no
+//! token, the endpoints don't exist at all (404), which is a stronger
+//! guarantee than "401 if you guess the path".
+//!
+//! Operations:
+//! - `GET    /api/v1/admin/tenants`              — list tenant DBs
+//! - `DELETE /api/v1/admin/tenants/{tenant_id}`  — GDPR delete
+//!
+//! Tenant ids in URLs are passed as-is to `DatabasePool::drop_tenant`,
+//! which sanitises them the same way it does for creation. Listing
+//! returns the raw DB names from `list_tenant_db_names` — operators
+//! can reverse-derive the tenant_id from the prefix.
+
+use axum::extract::{Extension, Path, Request};
+use axum::http::{header, StatusCode};
+use axum::middleware::Next;
+use axum::response::{IntoResponse, Response};
+use axum::Json;
+use secrecy::ExposeSecret;
+use serde::Serialize;
+
+use super::dto::AgentExt;
+
+#[derive(Serialize)]
+pub struct ListTenantDbsResponse {
+    pub tenant_db_names: Vec<String>,
+}
+
+#[tracing::instrument(skip_all)]
+pub async fn list_tenant_dbs(
+    Extension(agent): AgentExt,
+) -> Result<Json<ListTenantDbsResponse>, StatusCode> {
+    let names = agent.db_pool.list_tenant_db_names().await.map_err(|e| {
+        tracing::error!("admin: list_tenant_db_names failed: {e}");
+        StatusCode::INTERNAL_SERVER_ERROR
+    })?;
+    Ok(Json(ListTenantDbsResponse {
+        tenant_db_names: names,
+    }))
+}
+
+#[tracing::instrument(skip_all, fields(tenant_id = %tenant_id))]
+pub async fn drop_tenant_db(
+    Extension(agent): AgentExt,
+    Path(tenant_id): Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    agent.db_pool.drop_tenant(&tenant_id).await.map_err(|e| {
+        tracing::error!("admin: drop_tenant failed: {e}");
+        StatusCode::INTERNAL_SERVER_ERROR
+    })?;
+    Ok(Json(serde_json::json!({ "status": "dropped" })))
+}
+
+/// Constant-time-ish comparison of the configured admin token against
+/// the incoming bearer. Uses `subtle`-style byte equality so timing
+/// attacks can't probe the token character by character.
+fn tokens_eq(a: &str, b: &str) -> bool {
+    if a.len() != b.len() {
+        return false;
+    }
+    let mut diff = 0u8;
+    for (x, y) in a.bytes().zip(b.bytes()) {
+        diff |= x ^ y;
+    }
+    diff == 0
+}
+
+/// Middleware enforcing the static `ADMIN_API_TOKEN`. Mounted only on
+/// the admin sub-router, so this never runs on customer routes.
+pub async fn require_admin_token(
+    Extension(agent): AgentExt,
+    request: Request,
+    next: Next,
+) -> Response {
+    let Some(expected) = agent.config.admin_api_token.as_ref() else {
+        // Belt-and-braces — if the routes were somehow mounted without
+        // a token configured, refuse rather than no-op-pass.
+        return (StatusCode::NOT_FOUND, "admin disabled").into_response();
+    };
+    let presented = request
+        .headers()
+        .get(header::AUTHORIZATION)
+        .and_then(|v| v.to_str().ok())
+        .and_then(|s| s.strip_prefix("Bearer "))
+        .map(|s| s.trim());
+    let Some(presented) = presented.filter(|s| !s.is_empty()) else {
+        return (StatusCode::UNAUTHORIZED, "Missing bearer token").into_response();
+    };
+    if !tokens_eq(presented, expected.expose_secret()) {
+        return (StatusCode::UNAUTHORIZED, "Invalid admin token").into_response();
+    }
+    next.run(request).await
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    #[test]
+    fn tokens_eq_basic() {
+        assert!(tokens_eq("abc", "abc"));
+        assert!(!tokens_eq("abc", "abd"));
+        assert!(!tokens_eq("abc", "abcd"));
+        assert!(!tokens_eq("", "x"));
+        assert!(tokens_eq("", ""));
+    }
+}

compliance-agent/src/api/handlers/chat.rs

@@ -7,11 +7,13 @@ use mongodb::bson::doc;
 
 use compliance_core::models::chat::{ChatRequest, ChatResponse, SourceReference};
 use compliance_core::models::embedding::EmbeddingBuildRun;
+use compliance_core::tenant_ctx::TenantCtx;
 use compliance_graph::graph::embedding_store::EmbeddingStore;
 
 use crate::agent::ComplianceAgent;
 use crate::rag::pipeline::RagPipeline;
 
+use super::dto::tenant_db;
 use super::ApiResponse;
 
 type AgentExt = Extension<Arc<ComplianceAgent>>;
@@ -20,10 +22,12 @@ type AgentExt = Extension<Arc<ComplianceAgent>>;
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
 pub async fn chat(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(repo_id): Path<String>,
     Json(req): Json<ChatRequest>,
 ) -> Result<Json<ApiResponse<ChatResponse>>, StatusCode> {
-    let pipeline = RagPipeline::new(agent.llm.clone(), agent.db.inner());
+    let db = tenant_db(&agent, &tenant).await?;
+    let pipeline = RagPipeline::new(agent.llm.clone(), db.inner());
 
     // Step 1: Embed the user's message
     let query_vectors = agent
@@ -90,10 +94,13 @@ pub async fn chat(
     };
 
     let system_prompt = format!(
-        "You are an expert code assistant for a software repository. \
-         Answer the user's question based on the code context below. \
-         Reference specific files and functions when relevant. \
-         If the context doesn't contain enough information, say so.\n\n\
+        "You are a code assistant for this repository. Answer questions using the code context below.\n\n\
+         Rules:\n\
+         - Reference specific files, functions, and line numbers\n\
+         - Show code snippets when they help explain the answer\n\
+         - If the context is insufficient, say what's missing rather than guessing\n\
+         - Be concise — lead with the answer, then explain if needed\n\
+         - For security questions, note relevant CWEs and link to the finding if one exists\n\n\
          ## Code Context\n\n{code_context}"
     );
 
@@ -130,12 +137,15 @@ pub async fn chat(
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
 pub async fn build_embeddings(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(repo_id): Path<String>,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
+    // Resolve the tenant DB up front so we can move it into the spawn;
+    // the JWT/dev context isn't available inside detached tasks.
+    let db = tenant_db(&agent, &tenant).await?;
     let agent_clone = (*agent).clone();
     tokio::spawn(async move {
-        let repo = match agent_clone
-            .db
+        let repo = match db
             .repositories()
             .find_one(doc! { "_id": mongodb::bson::oid::ObjectId::parse_str(&repo_id).ok() })
             .await
@@ -148,8 +158,7 @@ pub async fn build_embeddings(
         };
 
         // Get latest graph build
-        let build = match agent_clone
-            .db
+        let build = match db
             .graph_builds()
             .find_one(doc! { "repo_id": &repo_id })
             .sort(doc! { "started_at": -1 })
@@ -168,26 +177,22 @@ pub async fn build_embeddings(
             .unwrap_or_else(|| "unknown".to_string());
 
         // Get nodes
-        let nodes: Vec<compliance_core::models::graph::CodeNode> = match agent_clone
-            .db
-            .graph_nodes()
-            .find(doc! { "repo_id": &repo_id })
-            .await
-        {
-            Ok(cursor) => {
-                use futures_util::StreamExt;
-                let mut items = Vec::new();
-                let mut cursor = cursor;
-                while let Some(Ok(item)) = cursor.next().await {
-                    items.push(item);
+        let nodes: Vec<compliance_core::models::graph::CodeNode> =
+            match db.graph_nodes().find(doc! { "repo_id": &repo_id }).await {
+                Ok(cursor) => {
+                    use futures_util::StreamExt;
+                    let mut items = Vec::new();
+                    let mut cursor = cursor;
+                    while let Some(Ok(item)) = cursor.next().await {
+                        items.push(item);
+                    }
+                    items
                 }
-                items
-            }
-            Err(e) => {
-                tracing::error!("[{repo_id}] Failed to fetch nodes: {e}");
-                return;
-            }
-        };
+                Err(e) => {
+                    tracing::error!("[{repo_id}] Failed to fetch nodes: {e}");
+                    return;
+                }
+            };
 
         let creds = crate::pipeline::git::RepoCredentials {
             ssh_key_path: Some(agent_clone.config.ssh_key_path.clone()),
@@ -204,7 +209,7 @@ pub async fn build_embeddings(
             }
         };
 
-        let pipeline = RagPipeline::new(agent_clone.llm.clone(), agent_clone.db.inner());
+        let pipeline = RagPipeline::new(agent_clone.llm.clone(), db.inner());
         match pipeline
             .build_embeddings(&repo_id, &repo_path, &graph_build_id, &nodes)
             .await
@@ -231,9 +236,11 @@ pub async fn build_embeddings(
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
 pub async fn embedding_status(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(repo_id): Path<String>,
 ) -> Result<Json<ApiResponse<Option<EmbeddingBuildRun>>>, StatusCode> {
-    let store = EmbeddingStore::new(agent.db.inner());
+    let db = tenant_db(&agent, &tenant).await?;
+    let store = EmbeddingStore::new(db.inner());
     let build = store.get_latest_build(&repo_id).await.map_err(|e| {
         tracing::error!("Failed to get embedding status: {e}");
         StatusCode::INTERNAL_SERVER_ERROR

compliance-agent/src/api/handlers/dast.rs

@@ -7,9 +7,11 @@ use mongodb::bson::doc;
 use serde::Deserialize;
 
 use compliance_core::models::dast::{DastFinding, DastScanRun, DastTarget, DastTargetType};
+use compliance_core::tenant_ctx::TenantCtx;
 
 use crate::agent::ComplianceAgent;
 
+use super::dto::tenant_db;
 use super::{collect_cursor_async, ApiResponse, PaginationParams};
 
 type AgentExt = Extension<Arc<ComplianceAgent>>;
@@ -45,9 +47,11 @@ fn default_rate_limit() -> u32 {
 #[tracing::instrument(skip_all)]
 pub async fn list_targets(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<PaginationParams>,
 ) -> Result<Json<ApiResponse<Vec<DastTarget>>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let skip = (params.page.saturating_sub(1)) * params.limit as u64;
     let total = db
         .dast_targets()
@@ -80,6 +84,7 @@ pub async fn list_targets(
 #[tracing::instrument(skip_all)]
 pub async fn add_target(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Json(req): Json<AddTargetRequest>,
 ) -> Result<Json<ApiResponse<DastTarget>>, StatusCode> {
     let mut target = DastTarget::new(req.name, req.base_url, req.target_type);
@@ -89,9 +94,8 @@ pub async fn add_target(
     target.rate_limit = req.rate_limit;
     target.allow_destructive = req.allow_destructive;
 
-    agent
-        .db
-        .dast_targets()
+    let db = tenant_db(&agent, &tenant).await?;
+    db.dast_targets()
         .insert_one(&target)
         .await
         .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
@@ -107,19 +111,19 @@ pub async fn add_target(
 #[tracing::instrument(skip_all, fields(target_id = %id))]
 pub async fn trigger_scan(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
 
-    let target = agent
-        .db
+    let target = db
         .dast_targets()
         .find_one(doc! { "_id": oid })
         .await
         .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
         .ok_or(StatusCode::NOT_FOUND)?;
 
-    let db = agent.db.clone();
     tokio::spawn(async move {
         let orchestrator = compliance_dast::DastOrchestrator::new(100);
         match orchestrator.run_scan(&target, Vec::new()).await {
@@ -147,9 +151,11 @@ pub async fn trigger_scan(
 #[tracing::instrument(skip_all)]
 pub async fn list_scan_runs(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<PaginationParams>,
 ) -> Result<Json<ApiResponse<Vec<DastScanRun>>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let skip = (params.page.saturating_sub(1)) * params.limit as u64;
     let total = db
         .dast_scan_runs()
@@ -183,9 +189,11 @@ pub async fn list_scan_runs(
 #[tracing::instrument(skip_all)]
 pub async fn list_findings(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<PaginationParams>,
 ) -> Result<Json<ApiResponse<Vec<DastFinding>>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let skip = (params.page.saturating_sub(1)) * params.limit as u64;
     let total = db
         .dast_findings()
@@ -219,12 +227,13 @@ pub async fn list_findings(
 #[tracing::instrument(skip_all, fields(finding_id = %id))]
 pub async fn get_finding(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<ApiResponse<DastFinding>>, StatusCode> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
 
-    let finding = agent
-        .db
+    let finding = db
         .dast_findings()
         .find_one(doc! { "_id": oid })
         .await

compliance-agent/src/api/handlers/dto.rs

@@ -180,6 +180,27 @@ pub struct SbomVersionDiff {
 pub(crate) type AgentExt = axum::extract::Extension<std::sync::Arc<crate::agent::ComplianceAgent>>;
 pub(crate) type ApiResult<T> = Result<axum::Json<ApiResponse<T>>, axum::http::StatusCode>;
 
+/// Resolve a tenant-scoped [`Database`] from the request's
+/// [`TenantContext`] (inserted by the M7.1 JWT middleware, or by the
+/// dev fallback in unsecured environments). The pool ensures the
+/// tenant's indexes idempotently.
+///
+/// Returns 500 on the rare path where Mongo refuses the database
+/// handle — the M7.1 auth/status middleware already rejects every
+/// other failure mode with 4xx before we get here.
+pub(crate) async fn tenant_db(
+    agent: &crate::agent::ComplianceAgent,
+    tenant: &compliance_core::tenant_ctx::TenantCtx,
+) -> Result<crate::database::Database, axum::http::StatusCode> {
+    agent.db_pool.for_tenant(&tenant.0).await.map_err(|e| {
+        tracing::error!(
+            tenant_id = %tenant.0.tenant_id,
+            "Failed to acquire tenant database: {e}"
+        );
+        axum::http::StatusCode::INTERNAL_SERVER_ERROR
+    })
+}
+
 pub(crate) async fn collect_cursor_async<T: serde::de::DeserializeOwned + Unpin + Send>(
     mut cursor: mongodb::Cursor<T>,
 ) -> Vec<T> {

compliance-agent/src/api/handlers/findings.rs

@@ -5,13 +5,16 @@ use mongodb::bson::doc;
 
 use super::dto::*;
 use compliance_core::models::Finding;
+use compliance_core::tenant_ctx::TenantCtx;
 
 #[tracing::instrument(skip_all, fields(repo_id = ?filter.repo_id, severity = ?filter.severity, scan_type = ?filter.scan_type))]
 pub async fn list_findings(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(filter): Query<FindingsFilter>,
 ) -> ApiResult<Vec<Finding>> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let mut query = doc! {};
     if let Some(repo_id) = &filter.repo_id {
         query.insert("repo_id", repo_id);
@@ -81,11 +84,12 @@ pub async fn list_findings(
 #[tracing::instrument(skip_all, fields(finding_id = %id))]
 pub async fn get_finding(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<ApiResponse<Finding>>, StatusCode> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
-    let finding = agent
-        .db
+    let db = tenant_db(&agent, &tenant).await?;
+    let finding = db
         .findings()
         .find_one(doc! { "_id": oid })
         .await
@@ -102,14 +106,14 @@ pub async fn get_finding(
 #[tracing::instrument(skip_all, fields(finding_id = %id))]
 pub async fn update_finding_status(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
     Json(req): Json<UpdateStatusRequest>,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
 
-    agent
-        .db
-        .findings()
+    db.findings()
         .update_one(
             doc! { "_id": oid },
             doc! { "$set": { "status": &req.status, "updated_at": mongodb::bson::DateTime::now() } },
@@ -123,6 +127,7 @@ pub async fn update_finding_status(
 #[tracing::instrument(skip_all)]
 pub async fn bulk_update_finding_status(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Json(req): Json<BulkUpdateStatusRequest>,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
     let oids: Vec<mongodb::bson::oid::ObjectId> = req
@@ -135,8 +140,8 @@ pub async fn bulk_update_finding_status(
         return Err(StatusCode::BAD_REQUEST);
     }
 
-    let result = agent
-        .db
+    let db = tenant_db(&agent, &tenant).await?;
+    let result = db
         .findings()
         .update_many(
             doc! { "_id": { "$in": oids } },
@@ -153,14 +158,14 @@ pub async fn bulk_update_finding_status(
 #[tracing::instrument(skip_all)]
 pub async fn update_finding_feedback(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
     Json(req): Json<UpdateFeedbackRequest>,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
 
-    agent
-        .db
-        .findings()
+    db.findings()
         .update_one(
             doc! { "_id": oid },
             doc! { "$set": { "developer_feedback": &req.feedback, "updated_at": mongodb::bson::DateTime::now() } },

compliance-agent/src/api/handlers/graph.rs

@@ -7,9 +7,11 @@ use mongodb::bson::doc;
 use serde::{Deserialize, Serialize};
 
 use compliance_core::models::graph::{CodeEdge, CodeNode, GraphBuildRun, ImpactAnalysis};
+use compliance_core::tenant_ctx::TenantCtx;
 
 use crate::agent::ComplianceAgent;
 
+use super::dto::tenant_db;
 use super::{collect_cursor_async, ApiResponse};
 
 type AgentExt = Extension<Arc<ComplianceAgent>>;
@@ -36,9 +38,11 @@ fn default_search_limit() -> usize {
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
 pub async fn get_graph(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(repo_id): Path<String>,
 ) -> Result<Json<ApiResponse<GraphData>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
 
     // Get latest build
     let build: Option<GraphBuildRun> = db
@@ -98,9 +102,11 @@ pub async fn get_graph(
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
 pub async fn get_nodes(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(repo_id): Path<String>,
 ) -> Result<Json<ApiResponse<Vec<CodeNode>>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let filter = doc! { "repo_id": &repo_id };
 
     let nodes: Vec<CodeNode> = match db.graph_nodes().find(filter).await {
@@ -123,9 +129,11 @@ pub async fn get_nodes(
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
 pub async fn get_communities(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(repo_id): Path<String>,
 ) -> Result<Json<ApiResponse<Vec<CommunityInfo>>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let filter = doc! { "repo_id": &repo_id };
 
     let nodes: Vec<CodeNode> = match db.graph_nodes().find(filter).await {
@@ -176,9 +184,11 @@ pub struct CommunityInfo {
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id, finding_id = %finding_id))]
 pub async fn get_impact(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path((repo_id, finding_id)): Path<(String, String)>,
 ) -> Result<Json<ApiResponse<Option<ImpactAnalysis>>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let filter = doc! { "repo_id": &repo_id, "finding_id": &finding_id };
 
     let impact = db
@@ -198,10 +208,12 @@ pub async fn get_impact(
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id, query = %params.q))]
 pub async fn search_symbols(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(repo_id): Path<String>,
     Query(params): Query<SearchParams>,
 ) -> Result<Json<ApiResponse<Vec<CodeNode>>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
 
     // Simple text search on qualified_name and name fields
     let filter = doc! {
@@ -234,10 +246,12 @@ pub async fn search_symbols(
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
 pub async fn get_file_content(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(repo_id): Path<String>,
     Query(params): Query<FileContentParams>,
 ) -> Result<Json<ApiResponse<FileContent>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
 
     // Look up the repository to get repo name
     let repo = db
@@ -296,12 +310,13 @@ pub struct FileContent {
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
 pub async fn trigger_build(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(repo_id): Path<String>,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
+    let db = tenant_db(&agent, &tenant).await?;
     let agent_clone = (*agent).clone();
     tokio::spawn(async move {
-        let repo = match agent_clone
-            .db
+        let repo = match db
             .repositories()
             .find_one(doc! { "_id": mongodb::bson::oid::ObjectId::parse_str(&repo_id).ok() })
             .await
@@ -333,8 +348,7 @@ pub async fn trigger_build(
 
         match engine.build_graph(&repo_path, &repo_id, &graph_build_id) {
             Ok((code_graph, build_run)) => {
-                let store =
-                    compliance_graph::graph::persistence::GraphStore::new(agent_clone.db.inner());
+                let store = compliance_graph::graph::persistence::GraphStore::new(db.inner());
                 let _ = store.delete_repo_graph(&repo_id).await;
                 let _ = store
                     .store_graph(&build_run, &code_graph.nodes, &code_graph.edges)

compliance-agent/src/api/handlers/health.rs

@@ -3,6 +3,7 @@ use mongodb::bson::doc;
 
 use super::dto::*;
 use compliance_core::models::ScanRun;
+use compliance_core::tenant_ctx::TenantCtx;
 
 #[tracing::instrument(skip_all)]
 pub async fn health() -> Json<serde_json::Value> {
@@ -10,8 +11,12 @@ pub async fn health() -> Json<serde_json::Value> {
 }
 
 #[tracing::instrument(skip_all)]
-pub async fn stats_overview(axum::extract::Extension(agent): AgentExt) -> ApiResult<OverviewStats> {
-    let db = &agent.db;
+pub async fn stats_overview(
+    axum::extract::Extension(agent): AgentExt,
+    tenant: TenantCtx,
+) -> ApiResult<OverviewStats> {
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
 
     let total_repositories = db
         .repositories()

compliance-agent/src/api/handlers/help_chat.rs

@@ -0,0 +1,217 @@
+use std::path::{Path, PathBuf};
+use std::sync::OnceLock;
+
+use axum::extract::Extension;
+use axum::http::StatusCode;
+use axum::Json;
+use serde::{Deserialize, Serialize};
+use walkdir::WalkDir;
+
+use super::dto::{AgentExt, ApiResponse};
+
+// ── DTOs ─────────────────────────────────────────────────────────────────────
+
+#[derive(Debug, Deserialize)]
+pub struct HelpChatMessage {
+    pub role: String,
+    pub content: String,
+}
+
+#[derive(Debug, Deserialize)]
+pub struct HelpChatRequest {
+    pub message: String,
+    #[serde(default)]
+    pub history: Vec<HelpChatMessage>,
+}
+
+#[derive(Debug, Serialize)]
+pub struct HelpChatResponse {
+    pub message: String,
+}
+
+// ── Doc cache ────────────────────────────────────────────────────────────────
+
+static DOC_CONTEXT: OnceLock<String> = OnceLock::new();
+
+/// Walk upward from `start` until we find a directory containing both
+/// `README.md` and a `docs/` subdirectory.
+fn find_project_root(start: &Path) -> Option<PathBuf> {
+    let mut current = start.to_path_buf();
+    loop {
+        if current.join("README.md").is_file() && current.join("docs").is_dir() {
+            return Some(current);
+        }
+        if !current.pop() {
+            return None;
+        }
+    }
+}
+
+/// Read README.md + all docs/**/*.md (excluding node_modules).
+fn load_docs(root: &Path) -> String {
+    let mut parts: Vec<String> = Vec::new();
+
+    // Root README first
+    if let Ok(content) = std::fs::read_to_string(root.join("README.md")) {
+        parts.push(format!("<!-- file: README.md -->\n{content}"));
+    }
+
+    // docs/**/*.md, skipping node_modules
+    for entry in WalkDir::new(root.join("docs"))
+        .follow_links(false)
+        .into_iter()
+        .filter_entry(|e| {
+            !e.path()
+                .components()
+                .any(|c| c.as_os_str() == "node_modules")
+        })
+        .filter_map(|e| e.ok())
+    {
+        let path = entry.path();
+        if !path.is_file() {
+            continue;
+        }
+        if path
+            .extension()
+            .and_then(|s| s.to_str())
+            .map(|s| !s.eq_ignore_ascii_case("md"))
+            .unwrap_or(true)
+        {
+            continue;
+        }
+
+        let rel = path.strip_prefix(root).unwrap_or(path);
+        if let Ok(content) = std::fs::read_to_string(path) {
+            parts.push(format!("<!-- file: {} -->\n{content}", rel.display()));
+        }
+    }
+
+    if parts.is_empty() {
+        tracing::warn!(
+            "help_chat: no documentation files found under {}",
+            root.display()
+        );
+    } else {
+        tracing::info!(
+            "help_chat: loaded {} documentation file(s) from {}",
+            parts.len(),
+            root.display()
+        );
+    }
+
+    parts.join("\n\n---\n\n")
+}
+
+/// Returns a reference to the cached doc context string, initialised on
+/// first call via `OnceLock`.
+///
+/// Discovery order:
+/// 1. `HELP_DOCS_PATH` env var (explicit override)
+/// 2. Walk up from the binary location
+/// 3. Current working directory
+/// 4. Common Docker paths (/app, /opt/compliance-scanner)
+fn doc_context() -> &'static str {
+    DOC_CONTEXT.get_or_init(|| {
+        // 1. Explicit env var
+        if let Ok(path) = std::env::var("HELP_DOCS_PATH") {
+            let p = PathBuf::from(&path);
+            if p.join("README.md").is_file() || p.join("docs").is_dir() {
+                tracing::info!("help_chat: loading docs from HELP_DOCS_PATH={path}");
+                return load_docs(&p);
+            }
+            tracing::warn!("help_chat: HELP_DOCS_PATH={path} has no README.md or docs/");
+        }
+
+        // 2. Walk up from binary location
+        let start = std::env::current_exe()
+            .ok()
+            .and_then(|p| p.parent().map(Path::to_path_buf))
+            .unwrap_or_else(|| PathBuf::from("."));
+
+        if let Some(root) = find_project_root(&start) {
+            return load_docs(&root);
+        }
+
+        // 3. Current working directory
+        if let Ok(cwd) = std::env::current_dir() {
+            if let Some(root) = find_project_root(&cwd) {
+                return load_docs(&root);
+            }
+            if cwd.join("README.md").is_file() {
+                return load_docs(&cwd);
+            }
+        }
+
+        // 4. Common Docker/deployment paths
+        for candidate in ["/app", "/opt/compliance-scanner", "/srv/compliance-scanner"] {
+            let p = PathBuf::from(candidate);
+            if p.join("README.md").is_file() || p.join("docs").is_dir() {
+                tracing::info!("help_chat: found docs at {candidate}");
+                return load_docs(&p);
+            }
+        }
+
+        tracing::error!(
+            "help_chat: could not locate project root; doc context will be empty. \
+             Set HELP_DOCS_PATH to the directory containing README.md and docs/"
+        );
+        String::new()
+    })
+}
+
+// ── Handler ──────────────────────────────────────────────────────────────────
+
+/// POST /api/v1/help/chat — Answer questions about the compliance-scanner
+/// using the project documentation as grounding context.
+#[tracing::instrument(skip_all)]
+pub async fn help_chat(
+    Extension(agent): AgentExt,
+    Json(req): Json<HelpChatRequest>,
+) -> Result<Json<ApiResponse<HelpChatResponse>>, StatusCode> {
+    let context = doc_context();
+
+    let system_prompt = if context.is_empty() {
+        "You are a helpful assistant for the Compliance Scanner project. \
+         Answer questions about how to use and configure it. \
+         No documentation was loaded at startup, so rely on your general knowledge."
+            .to_string()
+    } else {
+        format!(
+            "You are a helpful assistant for the Compliance Scanner project. \
+             Answer questions about how to use, configure, and understand it \
+             using the documentation below as your primary source of truth.\n\n\
+             Rules:\n\
+             - Prefer information from the provided docs over general knowledge\n\
+             - Quote or reference the relevant doc section when it helps\n\
+             - If the docs do not cover the topic, say so clearly\n\
+             - Be concise — lead with the answer, then explain if needed\n\
+             - Use markdown formatting for readability\n\n\
+             ## Project Documentation\n\n{context}"
+        )
+    };
+
+    let mut messages: Vec<(String, String)> = Vec::with_capacity(req.history.len() + 2);
+    messages.push(("system".to_string(), system_prompt));
+
+    for msg in &req.history {
+        messages.push((msg.role.clone(), msg.content.clone()));
+    }
+    messages.push(("user".to_string(), req.message));
+
+    let response_text = agent
+        .llm
+        .chat_with_messages(messages, Some(0.3))
+        .await
+        .map_err(|e| {
+            tracing::error!("LLM help chat failed: {e}");
+            StatusCode::INTERNAL_SERVER_ERROR
+        })?;
+
+    Ok(Json(ApiResponse {
+        data: HelpChatResponse {
+            message: response_text,
+        },
+        total: None,
+        page: None,
+    }))
+}

compliance-agent/src/api/handlers/issues.rs

@@ -4,13 +4,16 @@ use mongodb::bson::doc;
 
 use super::dto::*;
 use compliance_core::models::TrackerIssue;
+use compliance_core::tenant_ctx::TenantCtx;
 
 #[tracing::instrument(skip_all)]
 pub async fn list_issues(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<PaginationParams>,
 ) -> ApiResult<Vec<TrackerIssue>> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let skip = (params.page.saturating_sub(1)) * params.limit as u64;
     let total = db
         .tracker_issues()

compliance-agent/src/api/handlers/mcp_tokens.rs

@@ -0,0 +1,186 @@
+//! `/api/v1/mcp-tokens` — per-tenant API tokens for the MCP server.
+//!
+//! These are opaque static bearers issued via the dashboard (or a
+//! direct curl with a KC JWT) and copied into LLM clients (Claude
+//! Desktop / Cursor / ChatGPT). The MCP server hashes incoming bearers
+//! and looks them up in the cross-tenant `<prefix>__admin.mcp_tokens`
+//! collection to derive the tenant_id for routing.
+//!
+//! The raw token is shown to the caller exactly once at creation; the
+//! database only ever stores the SHA-256 hash. Revocation is a soft
+//! delete (sets `revoked: true`) so the audit log keeps the record.
+
+use axum::extract::{Extension, Path};
+use axum::http::StatusCode;
+use axum::Json;
+use base64::{engine::general_purpose::URL_SAFE_NO_PAD, Engine as _};
+use compliance_core::models::{McpToken, McpTokenView};
+use compliance_core::tenant_ctx::TenantCtx;
+use mongodb::bson::doc;
+use rand::RngCore;
+use sha2::{Digest, Sha256};
+
+use super::dto::{AgentExt, ApiResponse};
+
+/// Mongo collection name inside the admin DB.
+const COLLECTION: &str = "mcp_tokens";
+
+/// Token prefix the MCP server expects on every bearer.
+const TOKEN_PREFIX: &str = "mcpt_";
+
+/// Bytes of randomness behind each token. 32 → ~256 bits.
+/// Encoded as URL-safe base64 without padding → 43 chars.
+/// Combined with `mcpt_` → 48-char tokens.
+const TOKEN_RAND_BYTES: usize = 32;
+
+#[derive(serde::Deserialize)]
+pub struct CreateMcpTokenRequest {
+    pub name: String,
+}
+
+/// Returned exactly once at creation. The `token` field is gone from
+/// the listing endpoint — the user must save it now.
+#[derive(serde::Serialize)]
+pub struct CreateMcpTokenResponse {
+    pub token: String,
+    pub view: McpTokenView,
+}
+
+/// `POST /api/v1/mcp-tokens` — mint a new token for the caller's tenant.
+#[tracing::instrument(skip_all)]
+pub async fn create_mcp_token(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Json(req): Json<CreateMcpTokenRequest>,
+) -> Result<Json<CreateMcpTokenResponse>, StatusCode> {
+    if req.name.trim().is_empty() {
+        return Err(StatusCode::BAD_REQUEST);
+    }
+    let raw = generate_token();
+    let token_hash = sha256_hex(&raw);
+    let token_prefix: String = raw.chars().take(12).collect();
+
+    let mut token = McpToken {
+        id: None,
+        token_hash,
+        token_prefix,
+        tenant_id: tenant.0.tenant_id.clone(),
+        name: req.name.trim().to_string(),
+        created_by: tenant.0.user_id.clone(),
+        created_at: chrono::Utc::now(),
+        last_used_at: None,
+        revoked: false,
+    };
+
+    let col = agent.db_pool.admin_db().collection::<McpToken>(COLLECTION);
+    let res = col.insert_one(&token).await.map_err(|e| {
+        tracing::error!("Failed to insert MCP token: {e}");
+        StatusCode::INTERNAL_SERVER_ERROR
+    })?;
+    token.id = res.inserted_id.as_object_id();
+
+    Ok(Json(CreateMcpTokenResponse {
+        view: McpTokenView::from(&token),
+        token: raw,
+    }))
+}
+
+/// `GET /api/v1/mcp-tokens` — list tokens for the caller's tenant.
+/// Hash is never returned; only metadata + the 12-char prefix so the
+/// user can identify which row is which.
+#[tracing::instrument(skip_all)]
+pub async fn list_mcp_tokens(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+) -> Result<Json<ApiResponse<Vec<McpTokenView>>>, StatusCode> {
+    let col = agent.db_pool.admin_db().collection::<McpToken>(COLLECTION);
+    let mut cursor = col
+        .find(doc! { "tenant_id": &tenant.0.tenant_id })
+        .sort(doc! { "created_at": -1 })
+        .await
+        .map_err(|e| {
+            tracing::error!("Failed to list MCP tokens: {e}");
+            StatusCode::INTERNAL_SERVER_ERROR
+        })?;
+    let mut out = Vec::new();
+    while cursor.advance().await.map_err(|e| {
+        tracing::warn!("MCP tokens cursor advance failed: {e}");
+        StatusCode::INTERNAL_SERVER_ERROR
+    })? {
+        match cursor.deserialize_current() {
+            Ok(t) => out.push(McpTokenView::from(&t)),
+            Err(e) => tracing::warn!("Failed to deserialize MCP token: {e}"),
+        }
+    }
+    Ok(Json(ApiResponse {
+        data: out,
+        total: None,
+        page: None,
+    }))
+}
+
+/// `DELETE /api/v1/mcp-tokens/{id}` — revoke (soft delete).
+/// Scoped to the caller's tenant: a user can't revoke another tenant's
+/// token even if they guess its id.
+#[tracing::instrument(skip_all, fields(id = %id))]
+pub async fn revoke_mcp_token(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let col = agent.db_pool.admin_db().collection::<McpToken>(COLLECTION);
+    let result = col
+        .update_one(
+            doc! { "_id": oid, "tenant_id": &tenant.0.tenant_id },
+            doc! { "$set": { "revoked": true } },
+        )
+        .await
+        .map_err(|e| {
+            tracing::error!("Failed to revoke MCP token: {e}");
+            StatusCode::INTERNAL_SERVER_ERROR
+        })?;
+    if result.matched_count == 0 {
+        return Err(StatusCode::NOT_FOUND);
+    }
+    Ok(Json(serde_json::json!({ "status": "revoked" })))
+}
+
+/// 32 bytes random → URL-safe base64 → 43 chars, no padding.
+/// Prefixed with `mcpt_` so the MCP server can sniff the format
+/// before bothering with the DB lookup.
+fn generate_token() -> String {
+    let mut bytes = [0u8; TOKEN_RAND_BYTES];
+    rand::rng().fill_bytes(&mut bytes);
+    format!("{TOKEN_PREFIX}{}", URL_SAFE_NO_PAD.encode(bytes))
+}
+
+fn sha256_hex(s: &str) -> String {
+    let mut h = Sha256::new();
+    h.update(s.as_bytes());
+    hex::encode(h.finalize())
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    #[test]
+    fn generated_tokens_are_unique_and_prefixed() {
+        let a = generate_token();
+        let b = generate_token();
+        assert_ne!(a, b);
+        assert!(a.starts_with(TOKEN_PREFIX));
+        assert!(b.starts_with(TOKEN_PREFIX));
+        // 5 + 43 = 48 chars
+        assert_eq!(a.len(), 5 + 43);
+    }
+
+    #[test]
+    fn sha256_is_stable_and_64_hex() {
+        let h = sha256_hex("mcpt_abc");
+        assert_eq!(h.len(), 64);
+        assert!(h.chars().all(|c| c.is_ascii_hexdigit()));
+        assert_eq!(sha256_hex("mcpt_abc"), h);
+    }
+}

compliance-agent/src/api/handlers/mod.rs

@@ -1,10 +1,15 @@
+pub mod admin;
 pub mod chat;
 pub mod dast;
 pub mod dto;
 pub mod findings;
 pub mod graph;
 pub mod health;
+pub mod help_chat;
 pub mod issues;
+pub mod mcp_tokens;
+pub mod notifications;
+pub mod onboarding;
 pub mod pentest_handlers;
 pub use pentest_handlers as pentest;
 pub mod repos;

compliance-agent/src/api/handlers/notifications.rs

@@ -0,0 +1,183 @@
+use axum::extract::Extension;
+use axum::http::StatusCode;
+use axum::Json;
+use mongodb::bson::doc;
+use serde::Deserialize;
+
+use compliance_core::models::notification::CveNotification;
+use compliance_core::tenant_ctx::TenantCtx;
+
+use super::dto::{tenant_db, AgentExt, ApiResponse};
+
+/// GET /api/v1/notifications — List CVE notifications (newest first)
+#[tracing::instrument(skip_all)]
+pub async fn list_notifications(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    axum::extract::Query(params): axum::extract::Query<NotificationFilter>,
+) -> Result<Json<ApiResponse<Vec<CveNotification>>>, StatusCode> {
+    let db = tenant_db(&agent, &tenant).await?;
+    let mut filter = doc! {};
+
+    // Filter by status (default: show new + read, exclude dismissed)
+    match params.status.as_deref() {
+        Some("all") => {}
+        Some(s) => {
+            filter.insert("status", s);
+        }
+        None => {
+            filter.insert("status", doc! { "$in": ["new", "read"] });
+        }
+    }
+
+    // Filter by severity
+    if let Some(ref sev) = params.severity {
+        filter.insert("severity", sev.as_str());
+    }
+
+    // Filter by repo
+    if let Some(ref repo_id) = params.repo_id {
+        filter.insert("repo_id", repo_id.as_str());
+    }
+
+    let page = params.page.unwrap_or(1).max(1);
+    let limit = params.limit.unwrap_or(50).min(200);
+    let skip = (page - 1) * limit as u64;
+
+    let total = db
+        .cve_notifications()
+        .count_documents(filter.clone())
+        .await
+        .unwrap_or(0);
+
+    let notifications: Vec<CveNotification> = match db
+        .cve_notifications()
+        .find(filter)
+        .sort(doc! { "created_at": -1 })
+        .skip(skip)
+        .limit(limit)
+        .await
+    {
+        Ok(cursor) => {
+            use futures_util::StreamExt;
+            let mut items = Vec::new();
+            let mut cursor = cursor;
+            while let Some(Ok(n)) = cursor.next().await {
+                items.push(n);
+            }
+            items
+        }
+        Err(e) => {
+            tracing::error!("Failed to list notifications: {e}");
+            return Err(StatusCode::INTERNAL_SERVER_ERROR);
+        }
+    };
+
+    Ok(Json(ApiResponse {
+        data: notifications,
+        total: Some(total),
+        page: Some(page),
+    }))
+}
+
+/// GET /api/v1/notifications/count — Count of unread notifications
+#[tracing::instrument(skip_all)]
+pub async fn notification_count(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let db = tenant_db(&agent, &tenant).await?;
+    let count = db
+        .cve_notifications()
+        .count_documents(doc! { "status": "new" })
+        .await
+        .unwrap_or(0);
+
+    Ok(Json(serde_json::json!({ "count": count })))
+}
+
+/// PATCH /api/v1/notifications/:id/read — Mark a notification as read
+#[tracing::instrument(skip_all, fields(id = %id))]
+pub async fn mark_read(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    axum::extract::Path(id): axum::extract::Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
+
+    let result = db
+        .cve_notifications()
+        .update_one(
+            doc! { "_id": oid },
+            doc! { "$set": {
+                "status": "read",
+                "read_at": mongodb::bson::DateTime::now(),
+            }},
+        )
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+
+    if result.matched_count == 0 {
+        return Err(StatusCode::NOT_FOUND);
+    }
+    Ok(Json(serde_json::json!({ "status": "read" })))
+}
+
+/// PATCH /api/v1/notifications/:id/dismiss — Dismiss a notification
+#[tracing::instrument(skip_all, fields(id = %id))]
+pub async fn dismiss_notification(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    axum::extract::Path(id): axum::extract::Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
+
+    let result = db
+        .cve_notifications()
+        .update_one(
+            doc! { "_id": oid },
+            doc! { "$set": { "status": "dismissed" } },
+        )
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+
+    if result.matched_count == 0 {
+        return Err(StatusCode::NOT_FOUND);
+    }
+    Ok(Json(serde_json::json!({ "status": "dismissed" })))
+}
+
+/// POST /api/v1/notifications/read-all — Mark all new notifications as read
+#[tracing::instrument(skip_all)]
+pub async fn mark_all_read(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let db = tenant_db(&agent, &tenant).await?;
+    let result = db
+        .cve_notifications()
+        .update_many(
+            doc! { "status": "new" },
+            doc! { "$set": {
+                "status": "read",
+                "read_at": mongodb::bson::DateTime::now(),
+            }},
+        )
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+
+    Ok(Json(
+        serde_json::json!({ "updated": result.modified_count }),
+    ))
+}
+
+#[derive(Debug, Deserialize)]
+pub struct NotificationFilter {
+    pub status: Option<String>,
+    pub severity: Option<String>,
+    pub repo_id: Option<String>,
+    pub page: Option<u64>,
+    pub limit: Option<i64>,
+}

compliance-agent/src/api/handlers/onboarding.rs

@@ -0,0 +1,393 @@
+//! Onboarding API — CRUD for unified targets, artifact add, classification, and
+//! the scan-applicability matrix. The wizard (and future integrations) drive
+//! onboarding through these endpoints.
+
+use std::collections::HashMap;
+use std::sync::Arc;
+
+use axum::extract::{Extension, Path, Query};
+use axum::http::StatusCode;
+use axum::Json;
+use mongodb::bson::{doc, oid::ObjectId, to_bson};
+use serde::{Deserialize, Serialize};
+
+use compliance_core::models::{
+    Artifact, ArtifactKind, ComplianceProfile, OnboardedTarget, PlcFormat, TargetScanConfig,
+    TargetType,
+};
+use compliance_core::scan_matrix::{applicable_scans, supports_pentest};
+use compliance_core::tenant_ctx::TenantCtx;
+
+use crate::agent::ComplianceAgent;
+use crate::classify::{classify_target, MockFirmwareDetector};
+
+use super::dto::tenant_db;
+use super::{collect_cursor_async, ApiResponse, PaginationParams};
+
+type AgentExt = Extension<Arc<ComplianceAgent>>;
+
+/// A client-supplied artifact spec. The server builds the [`Artifact`] (and its
+/// id) from it, so clients never set internal fields.
+#[derive(Deserialize)]
+pub struct ArtifactInput {
+    pub kind: ArtifactKind,
+    pub source_ref: String,
+    #[serde(default)]
+    pub branch: Option<String>,
+    #[serde(default)]
+    pub plc_format: Option<PlcFormat>,
+}
+
+impl ArtifactInput {
+    fn build(&self) -> Artifact {
+        let s = self.source_ref.clone();
+        match self.kind {
+            ArtifactKind::GitRepo => {
+                Artifact::git_repo(s, self.branch.clone().unwrap_or_else(|| "main".to_string()))
+            }
+            ArtifactKind::LiveUrl => Artifact::live_url(s),
+            ArtifactKind::FirmwareImage => Artifact::firmware_image(s),
+            ArtifactKind::SourceArchive => Artifact::source_archive(s),
+            ArtifactKind::MobilePackage => Artifact::mobile_package(s),
+            ArtifactKind::ContainerImage => Artifact::container_image(s),
+            ArtifactKind::PlcProject => {
+                Artifact::plc_project(s, self.plc_format.unwrap_or(PlcFormat::PlcopenXml))
+            }
+            ArtifactKind::PlaintextDescription => Artifact::plaintext(s),
+        }
+    }
+}
+
+#[derive(Deserialize)]
+pub struct CreateTargetRequest {
+    pub name: String,
+    pub target_type: TargetType,
+    #[serde(default)]
+    pub description: Option<String>,
+    #[serde(default)]
+    pub artifacts: Vec<ArtifactInput>,
+}
+
+#[derive(Deserialize)]
+pub struct UpdateTargetRequest {
+    pub name: Option<String>,
+    pub target_type: Option<TargetType>,
+    pub scan_config: Option<TargetScanConfig>,
+    pub compliance_profile: Option<ComplianceProfile>,
+    pub scan_schedule: Option<String>,
+}
+
+/// One applicable-scan option, serialized for the wizard.
+#[derive(Serialize)]
+pub struct ScanOptionDto {
+    pub scan: String,
+    pub default_on: bool,
+    pub rationale: String,
+    pub required_artifact: Option<String>,
+    pub blocked_reason: Option<String>,
+}
+
+#[derive(Serialize)]
+pub struct ApplicableScansResponse {
+    pub scans: Vec<ScanOptionDto>,
+    pub pentest_supported: bool,
+}
+
+fn parse_oid(id: &str) -> Result<ObjectId, StatusCode> {
+    ObjectId::parse_str(id).map_err(|_| StatusCode::BAD_REQUEST)
+}
+
+/// GET /api/v1/targets — list onboarded targets (paginated).
+#[tracing::instrument(skip_all)]
+pub async fn list_targets(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Query(params): Query<PaginationParams>,
+) -> Result<Json<ApiResponse<Vec<OnboardedTarget>>>, StatusCode> {
+    let db = tenant_db(&agent, &tenant).await?;
+    let skip = (params.page.saturating_sub(1)) * params.limit as u64;
+    let total = db
+        .onboarded_targets()
+        .count_documents(doc! {})
+        .await
+        .unwrap_or(0);
+    let targets = match db
+        .onboarded_targets()
+        .find(doc! {})
+        .skip(skip)
+        .limit(params.limit)
+        .await
+    {
+        Ok(cursor) => collect_cursor_async(cursor).await,
+        Err(e) => {
+            tracing::warn!("Failed to fetch onboarded targets: {e}");
+            Vec::new()
+        }
+    };
+    Ok(Json(ApiResponse {
+        data: targets,
+        total: Some(total),
+        page: Some(params.page),
+    }))
+}
+
+/// POST /api/v1/targets — create an onboarded target.
+#[tracing::instrument(skip_all)]
+pub async fn create_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Json(req): Json<CreateTargetRequest>,
+) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
+    let mut target = OnboardedTarget::new(req.name, req.target_type);
+    target.description = req.description;
+    target.artifacts = req.artifacts.iter().map(ArtifactInput::build).collect();
+
+    let db = tenant_db(&agent, &tenant).await?;
+    let res = db
+        .onboarded_targets()
+        .insert_one(&target)
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+    target.id = res.inserted_id.as_object_id();
+    Ok(Json(ApiResponse {
+        data: target,
+        total: None,
+        page: None,
+    }))
+}
+
+/// GET /api/v1/targets/{id} — fetch one target.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn get_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    let target = db
+        .onboarded_targets()
+        .find_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
+        .ok_or(StatusCode::NOT_FOUND)?;
+    Ok(Json(ApiResponse {
+        data: target,
+        total: None,
+        page: None,
+    }))
+}
+
+/// PATCH /api/v1/targets/{id} — update mutable fields.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn update_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+    Json(req): Json<UpdateTargetRequest>,
+) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+
+    let mut set = doc! { "updated_at": mongodb::bson::DateTime::now() };
+    if let Some(name) = req.name {
+        set.insert("name", name);
+    }
+    if let Some(tt) = req.target_type {
+        set.insert(
+            "target_type",
+            to_bson(&tt).map_err(|_| StatusCode::BAD_REQUEST)?,
+        );
+    }
+    if let Some(sc) = req.scan_config {
+        set.insert(
+            "scan_config",
+            to_bson(&sc).map_err(|_| StatusCode::BAD_REQUEST)?,
+        );
+    }
+    if let Some(cp) = req.compliance_profile {
+        set.insert(
+            "compliance_profile",
+            to_bson(&cp).map_err(|_| StatusCode::BAD_REQUEST)?,
+        );
+    }
+    if let Some(ss) = req.scan_schedule {
+        set.insert("scan_schedule", ss);
+    }
+
+    db.onboarded_targets()
+        .update_one(doc! { "_id": oid }, doc! { "$set": set })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+
+    get_target(Extension(agent), tenant, Path(id)).await
+}
+
+/// DELETE /api/v1/targets/{id} — remove the target and its findings/scans.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn delete_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    db.onboarded_targets()
+        .delete_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+    // Cascade the collections keyed by repo_id == target id (best-effort).
+    let by_repo = doc! { "repo_id": &id };
+    let _ = db.findings().delete_many(by_repo.clone()).await;
+    let _ = db.scan_runs().delete_many(by_repo.clone()).await;
+    let _ = db.sbom_entries().delete_many(by_repo.clone()).await;
+    let _ = db.cve_alerts().delete_many(by_repo).await;
+    Ok(Json(serde_json::json!({ "status": "deleted" })))
+}
+
+/// POST /api/v1/targets/{id}/artifacts — attach an artifact (by reference).
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn add_artifact(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+    Json(input): Json<ArtifactInput>,
+) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    let artifact = to_bson(&input.build()).map_err(|_| StatusCode::BAD_REQUEST)?;
+    db.onboarded_targets()
+        .update_one(
+            doc! { "_id": oid },
+            doc! { "$push": { "artifacts": artifact }, "$set": { "updated_at": mongodb::bson::DateTime::now() } },
+        )
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+    get_target(Extension(agent), tenant, Path(id)).await
+}
+
+/// GET /api/v1/targets/{id}/applicable-scans — the scan-applicability matrix.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn applicable_scans_for_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<ApiResponse<ApplicableScansResponse>>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    let target = db
+        .onboarded_targets()
+        .find_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
+        .ok_or(StatusCode::NOT_FOUND)?;
+
+    let scans = applicable_scans(&target)
+        .into_iter()
+        .map(|o| ScanOptionDto {
+            scan: o.scan.to_string(),
+            default_on: o.default_on,
+            rationale: o.rationale,
+            required_artifact: o.required_artifact.map(|k| k.to_string()),
+            blocked_reason: o.blocked_reason,
+        })
+        .collect();
+
+    Ok(Json(ApiResponse {
+        data: ApplicableScansResponse {
+            scans,
+            pentest_supported: supports_pentest(target.target_type),
+        },
+        total: None,
+        page: None,
+    }))
+}
+
+/// POST /api/v1/targets/{id}/detect — classify the target from its artifacts.
+///
+/// This is the lightweight pass: it classifies from artifact kinds without
+/// ingesting (cloning) sources, so it returns immediately. Deep detection (after
+/// ingest, with tramiton firmware analysis) is a follow-up background step.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn detect_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    let mut target = db
+        .onboarded_targets()
+        .find_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
+        .ok_or(StatusCode::NOT_FOUND)?;
+
+    // No ingested working paths here → kind-based classification only; the mock
+    // firmware detector is never invoked (no firmware working path present).
+    let empty = HashMap::new();
+    let detector = MockFirmwareDetector { detection: None };
+    let classification = classify_target(&target, &empty, &detector)
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+
+    let classification_bson =
+        to_bson(&classification).map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+    db.onboarded_targets()
+        .update_one(
+            doc! { "_id": oid },
+            doc! { "$set": { "classification": classification_bson, "updated_at": mongodb::bson::DateTime::now() } },
+        )
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+    target.classification = Some(classification);
+
+    Ok(Json(ApiResponse {
+        data: target,
+        total: None,
+        page: None,
+    }))
+}
+
+/// POST /api/v1/targets/{id}/scan — trigger a scan for the target.
+///
+/// Dispatches to the unified pipeline when `UNIFIED_PIPELINE` is set (else the
+/// legacy path). Runs in the background and returns immediately.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn trigger_target_scan(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    // 404 if the target doesn't exist for this tenant.
+    if db
+        .onboarded_targets()
+        .find_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
+        .is_none()
+    {
+        return Err(StatusCode::NOT_FOUND);
+    }
+
+    let agent_clone = (*agent).clone();
+    let tenant_id = tenant.0.tenant_id.clone();
+    tokio::spawn(async move {
+        // Always the unified target pipeline — this endpoint is about an
+        // onboarded target by construction, independent of the global
+        // `unified_pipeline` transition flag used by the legacy paths.
+        if let Err(e) = agent_clone
+            .run_target_scan(
+                &tenant_id,
+                &id,
+                compliance_core::models::ScanTrigger::Manual,
+            )
+            .await
+        {
+            tracing::error!("Manual target scan failed for {id}: {e}");
+        }
+    });
+    Ok(Json(serde_json::json!({ "status": "scan_triggered" })))
+}

compliance-agent/src/api/handlers/pentest_handlers/export.rs

@@ -13,10 +13,11 @@ use compliance_core::models::dast::DastFinding;
 use compliance_core::models::finding::Finding;
 use compliance_core::models::pentest::*;
 use compliance_core::models::sbom::SbomEntry;
+use compliance_core::tenant_ctx::TenantCtx;
 
 use crate::agent::ComplianceAgent;
 
-use super::super::dto::collect_cursor_async;
+use super::super::dto::{collect_cursor_async, tenant_db};
 
 type AgentExt = Extension<Arc<ComplianceAgent>>;
 
@@ -35,11 +36,15 @@ pub struct ExportBody {
 #[tracing::instrument(skip_all, fields(session_id = %id))]
 pub async fn export_session_report(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
     Json(body): Json<ExportBody>,
 ) -> Result<axum::response::Response, (StatusCode, String)> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id)
         .map_err(|_| (StatusCode::BAD_REQUEST, "Invalid session ID".to_string()))?;
+    let db = tenant_db(&agent, &tenant)
+        .await
+        .map_err(|s| (s, "failed to acquire tenant database".to_string()))?;
 
     if body.password.len() < 8 {
         return Err((
@@ -49,8 +54,7 @@ pub async fn export_session_report(
     }
 
     // Fetch session
-    let session = agent
-        .db
+    let session = db
         .pentest_sessions()
         .find_one(doc! { "_id": oid })
         .await
@@ -64,9 +68,7 @@ pub async fn export_session_report(
 
     // Resolve target name
     let target = if let Ok(tid) = mongodb::bson::oid::ObjectId::parse_str(&session.target_id) {
-        agent
-            .db
-            .dast_targets()
+        db.dast_targets()
             .find_one(doc! { "_id": tid })
             .await
             .ok()
@@ -84,8 +86,7 @@ pub async fn export_session_report(
         .unwrap_or_default();
 
     // Fetch attack chain nodes
-    let nodes: Vec<AttackChainNode> = match agent
-        .db
+    let nodes: Vec<AttackChainNode> = match db
         .attack_chain_nodes()
         .find(doc! { "session_id": &id })
         .sort(doc! { "started_at": 1 })
@@ -95,9 +96,8 @@ pub async fn export_session_report(
         Err(_) => Vec::new(),
     };
 
-    // Fetch DAST findings for this session
-    let findings: Vec<DastFinding> = match agent
-        .db
+    // Fetch DAST findings for this session, then deduplicate
+    let raw_findings: Vec<DastFinding> = match db
         .dast_findings()
         .find(doc! { "session_id": &id })
         .sort(doc! { "severity": -1, "created_at": -1 })
@@ -106,6 +106,14 @@ pub async fn export_session_report(
         Ok(cursor) => collect_cursor_async(cursor).await,
         Err(_) => Vec::new(),
     };
+    let raw_count = raw_findings.len();
+    let findings = crate::pipeline::dedup::dedup_dast_findings(raw_findings);
+    if findings.len() < raw_count {
+        tracing::info!(
+            "Deduped DAST findings for session {id}: {raw_count} → {}",
+            findings.len()
+        );
+    }
 
     // Fetch SAST findings, SBOM, and code context for the linked repository
     let repo_id = session
@@ -114,8 +122,7 @@ pub async fn export_session_report(
         .or_else(|| target.as_ref().and_then(|t| t.repo_id.clone()));
 
     let (sast_findings, sbom_entries, code_context) = if let Some(ref rid) = repo_id {
-        let sast: Vec<Finding> = match agent
-            .db
+        let sast: Vec<Finding> = match db
             .findings()
             .find(doc! {
                 "repo_id": rid,
@@ -135,8 +142,7 @@ pub async fn export_session_report(
             Err(_) => Vec::new(),
         };
 
-        let sbom: Vec<SbomEntry> = match agent
-            .db
+        let sbom: Vec<SbomEntry> = match db
             .sbom_entries()
             .find(doc! {
                 "repo_id": rid,
@@ -156,8 +162,7 @@ pub async fn export_session_report(
         };
 
         // Build code context from graph nodes
-        let code_ctx: Vec<CodeContextHint> = match agent
-            .db
+        let code_ctx: Vec<CodeContextHint> = match db
             .graph_nodes()
             .find(doc! { "repo_id": rid, "is_entry_point": true })
             .limit(50)

compliance-agent/src/api/handlers/pentest_handlers/session.rs

@@ -7,11 +7,12 @@ use mongodb::bson::doc;
 use serde::Deserialize;
 
 use compliance_core::models::pentest::*;
+use compliance_core::tenant_ctx::TenantCtx;
 
 use crate::agent::ComplianceAgent;
 use crate::pentest::PentestOrchestrator;
 
-use super::super::dto::{collect_cursor_async, ApiResponse, PaginationParams};
+use super::super::dto::{collect_cursor_async, tenant_db, ApiResponse, PaginationParams};
 
 type AgentExt = Extension<Arc<ComplianceAgent>>;
 
@@ -43,6 +44,7 @@ pub struct LookupRepoQuery {
 #[tracing::instrument(skip_all)]
 pub async fn create_session(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Json(req): Json<CreateSessionRequest>,
 ) -> Result<Json<ApiResponse<PentestSession>>, (StatusCode, String)> {
     // Try to acquire a concurrency permit
@@ -57,6 +59,10 @@ pub async fn create_session(
             )
         })?;
 
+    let db = tenant_db(&agent, &tenant)
+        .await
+        .map_err(|s| (s, "failed to acquire tenant database".to_string()))?;
+
     if let Some(ref config) = req.config {
         // ── Wizard path ──────────────────────────────────────────────
         if !config.disclaimer_accepted {
@@ -67,8 +73,7 @@ pub async fn create_session(
         }
 
         // Look up or auto-create DastTarget by app_url
-        let target = match agent
-            .db
+        let target = match db
             .dast_targets()
             .find_one(doc! { "base_url": &config.app_url })
             .await
@@ -87,7 +92,7 @@ pub async fn create_session(
                 }
                 t.allow_destructive = config.allow_destructive;
                 t.excluded_paths = config.scope_exclusions.clone();
-                let res = agent.db.dast_targets().insert_one(&t).await.map_err(|e| {
+                let res = db.dast_targets().insert_one(&t).await.map_err(|e| {
                     (
                         StatusCode::INTERNAL_SERVER_ERROR,
                         format!("Failed to create target: {e}"),
@@ -110,8 +115,7 @@ pub async fn create_session(
 
         // Resolve repo_id from git_repo_url if provided
         if let Some(ref git_url) = config.git_repo_url {
-            if let Ok(Some(repo)) = agent
-                .db
+            if let Ok(Some(repo)) = db
                 .repositories()
                 .find_one(doc! { "git_url": git_url })
                 .await
@@ -120,8 +124,7 @@ pub async fn create_session(
             }
         }
 
-        let insert_result = agent
-            .db
+        let insert_result = db
             .pentest_sessions()
             .insert_one(&session)
             .await
@@ -212,8 +215,7 @@ pub async fn create_session(
         // Persist encrypted credentials to DB
         if session_for_task.config.is_some() {
             if let Some(sid) = session.id {
-                let _ = agent
-                    .db
+                let _ = db
                     .pentest_sessions()
                     .update_one(
                         doc! { "_id": sid },
@@ -245,12 +247,13 @@ pub async fn create_session(
             });
 
         let llm = agent.llm.clone();
-        let db = agent.db.clone();
+        let db_for_orchestrator = db.clone();
         let session_clone = session.clone();
         let target_clone = target.clone();
         let agent_ref = agent.clone();
         tokio::spawn(async move {
-            let orchestrator = PentestOrchestrator::new(llm, db, event_tx, Some(pause_rx));
+            let orchestrator =
+                PentestOrchestrator::new(llm, db_for_orchestrator, event_tx, Some(pause_rx));
             orchestrator
                 .run_session_guarded(&session_clone, &target_clone, &initial_message)
                 .await;
@@ -292,8 +295,7 @@ pub async fn create_session(
             )
         })?;
 
-        let target = agent
-            .db
+        let target = db
             .dast_targets()
             .find_one(doc! { "_id": oid })
             .await
@@ -310,8 +312,7 @@ pub async fn create_session(
         let mut session = PentestSession::new(target_id, strategy);
         session.repo_id = target.repo_id.clone();
 
-        let insert_result = agent
-            .db
+        let insert_result = db
             .pentest_sessions()
             .insert_one(&session)
             .await
@@ -338,12 +339,13 @@ pub async fn create_session(
         });
 
         let llm = agent.llm.clone();
-        let db = agent.db.clone();
+        let db_for_orchestrator = db.clone();
         let session_clone = session.clone();
         let target_clone = target.clone();
         let agent_ref = agent.clone();
         tokio::spawn(async move {
-            let orchestrator = PentestOrchestrator::new(llm, db, event_tx, Some(pause_rx));
+            let orchestrator =
+                PentestOrchestrator::new(llm, db_for_orchestrator, event_tx, Some(pause_rx));
             orchestrator
                 .run_session_guarded(&session_clone, &target_clone, &initial_message)
                 .await;
@@ -373,10 +375,11 @@ fn parse_strategy(s: &str) -> PentestStrategy {
 #[tracing::instrument(skip_all)]
 pub async fn lookup_repo(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<LookupRepoQuery>,
 ) -> Result<Json<ApiResponse<serde_json::Value>>, StatusCode> {
-    let repo = agent
-        .db
+    let db = tenant_db(&agent, &tenant).await?;
+    let repo = db
         .repositories()
         .find_one(doc! { "git_url": &params.url })
         .await
@@ -402,9 +405,11 @@ pub async fn lookup_repo(
 #[tracing::instrument(skip_all)]
 pub async fn list_sessions(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<PaginationParams>,
 ) -> Result<Json<ApiResponse<Vec<PentestSession>>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let skip = (params.page.saturating_sub(1)) * params.limit as u64;
     let total = db
         .pentest_sessions()
@@ -438,12 +443,13 @@ pub async fn list_sessions(
 #[tracing::instrument(skip_all, fields(session_id = %id))]
 pub async fn get_session(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<ApiResponse<PentestSession>>, StatusCode> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
 
-    let mut session = agent
-        .db
+    let mut session = db
         .pentest_sessions()
         .find_one(doc! { "_id": oid })
         .await
@@ -471,15 +477,18 @@ pub async fn get_session(
 #[tracing::instrument(skip_all, fields(session_id = %id))]
 pub async fn send_message(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
     Json(req): Json<SendMessageRequest>,
 ) -> Result<Json<ApiResponse<PentestMessage>>, (StatusCode, String)> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id)
         .map_err(|_| (StatusCode::BAD_REQUEST, "Invalid session ID".to_string()))?;
+    let db = tenant_db(&agent, &tenant)
+        .await
+        .map_err(|s| (s, "failed to acquire tenant database".to_string()))?;
 
     // Verify session exists and is running
-    let session = agent
-        .db
+    let session = db
         .pentest_sessions()
         .find_one(doc! { "_id": oid })
         .await
@@ -506,8 +515,7 @@ pub async fn send_message(
         )
     })?;
 
-    let target = agent
-        .db
+    let target = db
         .dast_targets()
         .find_one(doc! { "_id": target_oid })
         .await
@@ -527,13 +535,13 @@ pub async fn send_message(
     // Store user message
     let session_id = id.clone();
     let user_msg = PentestMessage::user(session_id.clone(), req.message.clone());
-    let _ = agent.db.pentest_messages().insert_one(&user_msg).await;
+    let _ = db.pentest_messages().insert_one(&user_msg).await;
 
     let response_msg = user_msg.clone();
 
     // Spawn orchestrator to continue the session
     let llm = agent.llm.clone();
-    let db = agent.db.clone();
+    let db_for_orchestrator = db.clone();
     let message = req.message.clone();
 
     // Use existing broadcast sender if available, otherwise create a new one
@@ -548,7 +556,7 @@ pub async fn send_message(
         .unwrap_or_else(|| agent.register_session_stream(&session_id));
 
     tokio::spawn(async move {
-        let orchestrator = PentestOrchestrator::new(llm, db, event_tx, None);
+        let orchestrator = PentestOrchestrator::new(llm, db_for_orchestrator, event_tx, None);
         orchestrator
             .run_session_guarded(&session, &target, &message)
             .await;
@@ -565,13 +573,16 @@ pub async fn send_message(
 #[tracing::instrument(skip_all, fields(session_id = %id))]
 pub async fn stop_session(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<ApiResponse<PentestSession>>, (StatusCode, String)> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id)
         .map_err(|_| (StatusCode::BAD_REQUEST, "Invalid session ID".to_string()))?;
+    let db = tenant_db(&agent, &tenant)
+        .await
+        .map_err(|s| (s, "failed to acquire tenant database".to_string()))?;
 
-    let session = agent
-        .db
+    let session = db
         .pentest_sessions()
         .find_one(doc! { "_id": oid })
         .await
@@ -590,9 +601,7 @@ pub async fn stop_session(
         ));
     }
 
-    agent
-        .db
-        .pentest_sessions()
+    db.pentest_sessions()
         .update_one(
             doc! { "_id": oid },
             doc! { "$set": {
@@ -612,8 +621,7 @@ pub async fn stop_session(
     // Clean up session resources
     agent.cleanup_session(&id);
 
-    let updated = agent
-        .db
+    let updated = db
         .pentest_sessions()
         .find_one(doc! { "_id": oid })
         .await
@@ -641,13 +649,16 @@ pub async fn stop_session(
 #[tracing::instrument(skip_all, fields(session_id = %id))]
 pub async fn pause_session(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<ApiResponse<serde_json::Value>>, (StatusCode, String)> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id)
         .map_err(|_| (StatusCode::BAD_REQUEST, "Invalid session ID".to_string()))?;
+    let db = tenant_db(&agent, &tenant)
+        .await
+        .map_err(|s| (s, "failed to acquire tenant database".to_string()))?;
 
-    let session = agent
-        .db
+    let session = db
         .pentest_sessions()
         .find_one(doc! { "_id": oid })
         .await
@@ -684,13 +695,16 @@ pub async fn pause_session(
 #[tracing::instrument(skip_all, fields(session_id = %id))]
 pub async fn resume_session(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<ApiResponse<serde_json::Value>>, (StatusCode, String)> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id)
         .map_err(|_| (StatusCode::BAD_REQUEST, "Invalid session ID".to_string()))?;
+    let db = tenant_db(&agent, &tenant)
+        .await
+        .map_err(|s| (s, "failed to acquire tenant database".to_string()))?;
 
-    let session = agent
-        .db
+    let session = db
         .pentest_sessions()
         .find_one(doc! { "_id": oid })
         .await
@@ -727,12 +741,13 @@ pub async fn resume_session(
 #[tracing::instrument(skip_all, fields(session_id = %id))]
 pub async fn get_attack_chain(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<ApiResponse<Vec<AttackChainNode>>>, StatusCode> {
     let _oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
 
-    let nodes = match agent
-        .db
+    let nodes = match db
         .attack_chain_nodes()
         .find(doc! { "session_id": &id })
         .sort(doc! { "started_at": 1 })
@@ -757,21 +772,21 @@ pub async fn get_attack_chain(
 #[tracing::instrument(skip_all, fields(session_id = %id))]
 pub async fn get_messages(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
     Query(params): Query<PaginationParams>,
 ) -> Result<Json<ApiResponse<Vec<PentestMessage>>>, StatusCode> {
     let _oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
 
     let skip = (params.page.saturating_sub(1)) * params.limit as u64;
-    let total = agent
-        .db
+    let total = db
         .pentest_messages()
         .count_documents(doc! { "session_id": &id })
         .await
         .unwrap_or(0);
 
-    let messages = match agent
-        .db
+    let messages = match db
         .pentest_messages()
         .find(doc! { "session_id": &id })
         .sort(doc! { "created_at": 1 })
@@ -797,21 +812,21 @@ pub async fn get_messages(
 #[tracing::instrument(skip_all, fields(session_id = %id))]
 pub async fn get_session_findings(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
     Query(params): Query<PaginationParams>,
 ) -> Result<Json<ApiResponse<Vec<compliance_core::models::dast::DastFinding>>>, StatusCode> {
     let _oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
 
     let skip = (params.page.saturating_sub(1)) * params.limit as u64;
-    let total = agent
-        .db
+    let total = db
         .dast_findings()
         .count_documents(doc! { "session_id": &id })
         .await
         .unwrap_or(0);
 
-    let findings = match agent
-        .db
+    let findings = match db
         .dast_findings()
         .find(doc! { "session_id": &id })
         .sort(doc! { "created_at": -1 })

compliance-agent/src/api/handlers/pentest_handlers/stats.rs

@@ -6,10 +6,11 @@ use axum::Json;
 use mongodb::bson::doc;
 
 use compliance_core::models::pentest::*;
+use compliance_core::tenant_ctx::TenantCtx;
 
 use crate::agent::ComplianceAgent;
 
-use super::super::dto::{collect_cursor_async, ApiResponse};
+use super::super::dto::{collect_cursor_async, tenant_db, ApiResponse};
 
 type AgentExt = Extension<Arc<ComplianceAgent>>;
 
@@ -17,8 +18,10 @@ type AgentExt = Extension<Arc<ComplianceAgent>>;
 #[tracing::instrument(skip_all)]
 pub async fn pentest_stats(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
 ) -> Result<Json<ApiResponse<PentestStats>>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
 
     let running_sessions = db
         .pentest_sessions()

compliance-agent/src/api/handlers/pentest_handlers/stream.rs

@@ -11,10 +11,11 @@ use tokio_stream::wrappers::BroadcastStream;
 use tokio_stream::StreamExt;
 
 use compliance_core::models::pentest::*;
+use compliance_core::tenant_ctx::TenantCtx;
 
 use crate::agent::ComplianceAgent;
 
-use super::super::dto::collect_cursor_async;
+use super::super::dto::{collect_cursor_async, tenant_db};
 
 type AgentExt = Extension<Arc<ComplianceAgent>>;
 
@@ -25,13 +26,14 @@ type AgentExt = Extension<Arc<ComplianceAgent>>;
 #[tracing::instrument(skip_all, fields(session_id = %id))]
 pub async fn session_stream(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Sse<impl futures_util::Stream<Item = Result<Event, Infallible>>>, StatusCode> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
 
     // Verify session exists
-    let _session = agent
-        .db
+    let _session = db
         .pentest_sessions()
         .find_one(doc! { "_id": oid })
         .await
@@ -43,8 +45,7 @@ pub async fn session_stream(
     let mut initial_events: Vec<Result<Event, Infallible>> = Vec::new();
 
     // Fetch recent messages for this session
-    let messages: Vec<PentestMessage> = match agent
-        .db
+    let messages: Vec<PentestMessage> = match db
         .pentest_messages()
         .find(doc! { "session_id": &id })
         .sort(doc! { "created_at": 1 })
@@ -56,8 +57,7 @@ pub async fn session_stream(
     };
 
     // Fetch recent attack chain nodes
-    let nodes: Vec<AttackChainNode> = match agent
-        .db
+    let nodes: Vec<AttackChainNode> = match db
         .attack_chain_nodes()
         .find(doc! { "session_id": &id })
         .sort(doc! { "started_at": 1 })
@@ -94,8 +94,7 @@ pub async fn session_stream(
     }
 
     // Add current session status event
-    let session = agent
-        .db
+    let session = db
         .pentest_sessions()
         .find_one(doc! { "_id": oid })
         .await

compliance-agent/src/api/handlers/repos.rs

@@ -5,13 +5,16 @@ use mongodb::bson::doc;
 
 use super::dto::*;
 use compliance_core::models::*;
+use compliance_core::tenant_ctx::TenantCtx;
 
 #[tracing::instrument(skip_all)]
 pub async fn list_repositories(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<PaginationParams>,
 ) -> ApiResult<Vec<TrackedRepository>> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let skip = (params.page.saturating_sub(1)) * params.limit as u64;
     let total = db
         .repositories()
@@ -43,6 +46,7 @@ pub async fn list_repositories(
 #[tracing::instrument(skip_all)]
 pub async fn add_repository(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Json(req): Json<AddRepositoryRequest>,
 ) -> Result<Json<ApiResponse<TrackedRepository>>, (StatusCode, String)> {
     // Validate repository access before saving
@@ -69,17 +73,15 @@ pub async fn add_repository(
     repo.tracker_token = req.tracker_token;
     repo.scan_schedule = req.scan_schedule;
 
-    agent
-        .db
-        .repositories()
-        .insert_one(&repo)
+    let db = tenant_db(&agent, &tenant)
         .await
-        .map_err(|_| {
-            (
-                StatusCode::CONFLICT,
-                "Repository already exists".to_string(),
-            )
-        })?;
+        .map_err(|s| (s, "failed to acquire tenant database".to_string()))?;
+    db.repositories().insert_one(&repo).await.map_err(|_| {
+        (
+            StatusCode::CONFLICT,
+            "Repository already exists".to_string(),
+        )
+    })?;
 
     Ok(Json(ApiResponse {
         data: repo,
@@ -91,10 +93,12 @@ pub async fn add_repository(
 #[tracing::instrument(skip_all, fields(repo_id = %id))]
 pub async fn update_repository(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
     Json(req): Json<UpdateRepositoryRequest>,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
 
     let mut set_doc = doc! { "updated_at": mongodb::bson::DateTime::now() };
 
@@ -126,8 +130,7 @@ pub async fn update_repository(
         set_doc.insert("scan_schedule", schedule);
     }
 
-    let result = agent
-        .db
+    let result = db
         .repositories()
         .update_one(doc! { "_id": oid }, doc! { "$set": set_doc })
         .await
@@ -155,11 +158,16 @@ pub async fn get_ssh_public_key(
 #[tracing::instrument(skip_all, fields(repo_id = %id))]
 pub async fn trigger_scan(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
     let agent_clone = (*agent).clone();
+    let tenant_id = tenant.0.tenant_id.clone();
     tokio::spawn(async move {
-        if let Err(e) = agent_clone.run_scan(&id, ScanTrigger::Manual).await {
+        if let Err(e) = agent_clone
+            .run_scan(&tenant_id, &id, ScanTrigger::Manual)
+            .await
+        {
             tracing::error!("Manual scan failed for {id}: {e}");
         }
     });
@@ -170,11 +178,12 @@ pub async fn trigger_scan(
 /// Return the webhook secret for a repository (used by dashboard to display it)
 pub async fn get_webhook_config(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
-    let repo = agent
-        .db
+    let db = tenant_db(&agent, &tenant).await?;
+    let repo = db
         .repositories()
         .find_one(doc! { "_id": oid })
         .await
@@ -196,10 +205,12 @@ pub async fn get_webhook_config(
 #[tracing::instrument(skip_all, fields(repo_id = %id))]
 pub async fn delete_repository(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Path(id): Path<String>,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
     let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
 
     // Delete the repository
     let result = db
@@ -237,5 +248,92 @@ pub async fn delete_repository(
         .delete_many(doc! { "repo_id": &id })
         .await;
 
+    // Cascade delete DAST targets linked to this repo, and all their downstream data
+    // (scan runs, findings, pentest sessions, attack chains, messages)
+    if let Ok(mut cursor) = db.dast_targets().find(doc! { "repo_id": &id }).await {
+        use futures_util::StreamExt;
+        while let Some(Ok(target)) = cursor.next().await {
+            let target_id = target.id.map(|oid| oid.to_hex()).unwrap_or_default();
+            if !target_id.is_empty() {
+                cascade_delete_dast_target(db, &target_id).await;
+            }
+        }
+    }
+
+    // Also delete pentest sessions linked directly to this repo (not via target)
+    if let Ok(mut cursor) = db.pentest_sessions().find(doc! { "repo_id": &id }).await {
+        use futures_util::StreamExt;
+        while let Some(Ok(session)) = cursor.next().await {
+            let session_id = session.id.map(|oid| oid.to_hex()).unwrap_or_default();
+            if !session_id.is_empty() {
+                let _ = db
+                    .attack_chain_nodes()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                let _ = db
+                    .pentest_messages()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                // Delete DAST findings produced by this session
+                let _ = db
+                    .dast_findings()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+            }
+        }
+    }
+    let _ = db
+        .pentest_sessions()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+
     Ok(Json(serde_json::json!({ "status": "deleted" })))
 }
+
+/// Cascade-delete a DAST target and all its downstream data.
+async fn cascade_delete_dast_target(db: &crate::database::Database, target_id: &str) {
+    // Delete pentest sessions for this target (and their attack chains + messages)
+    if let Ok(mut cursor) = db
+        .pentest_sessions()
+        .find(doc! { "target_id": target_id })
+        .await
+    {
+        use futures_util::StreamExt;
+        while let Some(Ok(session)) = cursor.next().await {
+            let session_id = session.id.map(|oid| oid.to_hex()).unwrap_or_default();
+            if !session_id.is_empty() {
+                let _ = db
+                    .attack_chain_nodes()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                let _ = db
+                    .pentest_messages()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                let _ = db
+                    .dast_findings()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+            }
+        }
+    }
+    let _ = db
+        .pentest_sessions()
+        .delete_many(doc! { "target_id": target_id })
+        .await;
+
+    // Delete DAST scan runs and their findings
+    let _ = db
+        .dast_findings()
+        .delete_many(doc! { "target_id": target_id })
+        .await;
+    let _ = db
+        .dast_scan_runs()
+        .delete_many(doc! { "target_id": target_id })
+        .await;
+
+    // Delete the target itself
+    if let Ok(oid) = mongodb::bson::oid::ObjectId::parse_str(target_id) {
+        let _ = db.dast_targets().delete_one(doc! { "_id": oid }).await;
+    }
+}

compliance-agent/src/api/handlers/sbom.rs

@@ -6,6 +6,7 @@ use mongodb::bson::doc;
 
 use super::dto::*;
 use compliance_core::models::SbomEntry;
+use compliance_core::tenant_ctx::TenantCtx;
 
 const COPYLEFT_LICENSES: &[&str] = &[
     "GPL-2.0",
@@ -29,8 +30,10 @@ const COPYLEFT_LICENSES: &[&str] = &[
 #[tracing::instrument(skip_all)]
 pub async fn sbom_filters(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
 ) -> Result<Json<serde_json::Value>, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
 
     let managers: Vec<String> = db
         .sbom_entries()
@@ -61,9 +64,11 @@ pub async fn sbom_filters(
 #[tracing::instrument(skip_all, fields(repo_id = ?filter.repo_id, package_manager = ?filter.package_manager))]
 pub async fn list_sbom(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(filter): Query<SbomFilter>,
 ) -> ApiResult<Vec<SbomEntry>> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let mut query = doc! {};
 
     if let Some(repo_id) = &filter.repo_id {
@@ -120,9 +125,11 @@ pub async fn list_sbom(
 #[tracing::instrument(skip_all)]
 pub async fn export_sbom(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<SbomExportParams>,
 ) -> Result<impl IntoResponse, StatusCode> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let entries: Vec<SbomEntry> = match db
         .sbom_entries()
         .find(doc! { "repo_id": &params.repo_id })
@@ -236,9 +243,11 @@ pub async fn export_sbom(
 #[tracing::instrument(skip_all)]
 pub async fn license_summary(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<SbomFilter>,
 ) -> ApiResult<Vec<LicenseSummary>> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let mut query = doc! {};
     if let Some(repo_id) = &params.repo_id {
         query.insert("repo_id", repo_id);
@@ -285,9 +294,11 @@ pub async fn license_summary(
 #[tracing::instrument(skip_all)]
 pub async fn sbom_diff(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<SbomDiffParams>,
 ) -> ApiResult<SbomDiffResult> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
 
     let entries_a: Vec<SbomEntry> = match db
         .sbom_entries()

compliance-agent/src/api/handlers/scans.rs

@@ -4,13 +4,16 @@ use mongodb::bson::doc;
 
 use super::dto::*;
 use compliance_core::models::ScanRun;
+use compliance_core::tenant_ctx::TenantCtx;
 
 #[tracing::instrument(skip_all)]
 pub async fn list_scan_runs(
     Extension(agent): AgentExt,
+    tenant: TenantCtx,
     Query(params): Query<PaginationParams>,
 ) -> ApiResult<Vec<ScanRun>> {
-    let db = &agent.db;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
     let skip = (params.page.saturating_sub(1)) * params.limit as u64;
     let total = db.scan_runs().count_documents(doc! {}).await.unwrap_or(0);
 

compliance-agent/src/api/mod.rs

@@ -1,4 +1,3 @@
-pub mod auth_middleware;
 pub mod handlers;
 pub mod routes;
 pub mod server;

compliance-agent/src/api/routes.rs

@@ -2,7 +2,6 @@ use axum::routing::{delete, get, patch, post};
 use axum::Router;
 
 use crate::api::handlers;
-use crate::webhooks;
 
 pub fn build_router() -> Router {
     Router::new()
@@ -26,6 +25,33 @@ pub fn build_router() -> Router {
             "/api/v1/repositories/{id}/webhook-config",
             get(handlers::get_webhook_config),
         )
+        // Unified onboarding targets (#131).
+        .route(
+            "/api/v1/targets",
+            get(handlers::onboarding::list_targets).post(handlers::onboarding::create_target),
+        )
+        .route(
+            "/api/v1/targets/{id}",
+            get(handlers::onboarding::get_target)
+                .patch(handlers::onboarding::update_target)
+                .delete(handlers::onboarding::delete_target),
+        )
+        .route(
+            "/api/v1/targets/{id}/artifacts",
+            post(handlers::onboarding::add_artifact),
+        )
+        .route(
+            "/api/v1/targets/{id}/applicable-scans",
+            get(handlers::onboarding::applicable_scans_for_target),
+        )
+        .route(
+            "/api/v1/targets/{id}/detect",
+            post(handlers::onboarding::detect_target),
+        )
+        .route(
+            "/api/v1/targets/{id}/scan",
+            post(handlers::onboarding::trigger_target_scan),
+        )
         .route("/api/v1/findings", get(handlers::list_findings))
         .route("/api/v1/findings/{id}", get(handlers::get_finding))
         .route(
@@ -47,6 +73,15 @@ pub fn build_router() -> Router {
         .route("/api/v1/sbom/diff", get(handlers::sbom_diff))
         .route("/api/v1/issues", get(handlers::list_issues))
         .route("/api/v1/scan-runs", get(handlers::list_scan_runs))
+        // MCP token management (per-tenant API tokens for the MCP server)
+        .route(
+            "/api/v1/mcp-tokens",
+            get(handlers::mcp_tokens::list_mcp_tokens).post(handlers::mcp_tokens::create_mcp_token),
+        )
+        .route(
+            "/api/v1/mcp-tokens/{id}",
+            delete(handlers::mcp_tokens::revoke_mcp_token),
+        )
         // Graph API endpoints
         .route("/api/v1/graph/{repo_id}", get(handlers::graph::get_graph))
         .route(
@@ -99,6 +134,29 @@ pub fn build_router() -> Router {
             "/api/v1/chat/{repo_id}/status",
             get(handlers::chat::embedding_status),
         )
+        // Help chat (documentation-grounded Q&A)
+        .route("/api/v1/help/chat", post(handlers::help_chat::help_chat))
+        // CVE notification endpoints
+        .route(
+            "/api/v1/notifications",
+            get(handlers::notifications::list_notifications),
+        )
+        .route(
+            "/api/v1/notifications/count",
+            get(handlers::notifications::notification_count),
+        )
+        .route(
+            "/api/v1/notifications/read-all",
+            post(handlers::notifications::mark_all_read),
+        )
+        .route(
+            "/api/v1/notifications/{id}/read",
+            patch(handlers::notifications::mark_read),
+        )
+        .route(
+            "/api/v1/notifications/{id}/dismiss",
+            patch(handlers::notifications::dismiss_notification),
+        )
         // Pentest API endpoints
         .route(
             "/api/v1/pentest/lookup-repo",
@@ -152,17 +210,10 @@ pub fn build_router() -> Router {
             "/api/v1/pentest/stats",
             get(handlers::pentest::pentest_stats),
         )
-        // Webhook endpoints (proxied through dashboard)
-        .route(
-            "/webhook/github/{repo_id}",
-            post(webhooks::github::handle_github_webhook),
-        )
-        .route(
-            "/webhook/gitlab/{repo_id}",
-            post(webhooks::gitlab::handle_gitlab_webhook),
-        )
-        .route(
-            "/webhook/gitea/{repo_id}",
-            post(webhooks::gitea::handle_gitea_webhook),
-        )
+    // Webhook routes live on the separate webhook server (port 3002,
+    // see crate::webhooks::server). The M7.2-C tenant-in-URL form is
+    // `/webhook/{tenant_id}/{platform}/{repo_id}` and the handlers
+    // expect a (tenant_id, repo_id) path tuple. Anything mounting
+    // them here on the API server would mismatch the handler
+    // signature, so the routes are not exported.
 }

compliance-agent/src/api/server.rs

@@ -1,20 +1,99 @@
 use std::sync::Arc;
 
-use axum::{middleware, Extension};
+use axum::extract::Request;
+use axum::http::HeaderValue;
+use axum::middleware::Next;
+use axum::response::Response;
+use axum::routing::{delete, get};
+use axum::{middleware, Extension, Router};
 use tokio::sync::RwLock;
 use tower_http::cors::CorsLayer;
+use tower_http::set_header::SetResponseHeaderLayer;
 use tower_http::trace::TraceLayer;
 
+use compliance_core::auth::{require_jwt_auth, require_tenant_status, JwksState};
+use compliance_core::{TenantContext, TenantStatus};
+
 use crate::agent::ComplianceAgent;
-use crate::api::auth_middleware::{require_jwt_auth, JwksState};
+use crate::api::handlers;
 use crate::api::routes;
 use crate::error::AgentError;
 
+/// Synthetic tenant id used when Keycloak isn't configured (local dev,
+/// `cargo run` against a bare Mongo). Lets the handler stack stay
+/// uniformly tenant-scoped without the operator having to spin up KC
+/// just to poke at the API. Override via `DEV_TENANT_ID`.
+const DEFAULT_DEV_TENANT_ID: &str = "dev";
+
+/// Inject a synthetic [`TenantContext`] for any request that lacks one.
+/// Only mounted when Keycloak is NOT configured; with KC, the real
+/// `require_jwt_auth` middleware owns this and we never reach here
+/// without a context.
+///
+/// Public so the integration-test harness can mount it without
+/// duplicating the synthetic-context shape.
+pub async fn inject_dev_tenant(mut request: Request, next: Next) -> Response {
+    if request.extensions().get::<TenantContext>().is_none() {
+        let tenant_id =
+            std::env::var("DEV_TENANT_ID").unwrap_or_else(|_| DEFAULT_DEV_TENANT_ID.to_string());
+        let ctx = TenantContext {
+            tenant_slug: tenant_id.clone(),
+            tenant_id,
+            org_roles: vec![],
+            products: vec![],
+            plan: "dev".to_string(),
+            status: TenantStatus::Active,
+            user_id: "dev-user".to_string(),
+            user_name: None,
+        };
+        request.extensions_mut().insert(ctx);
+    }
+    next.run(request).await
+}
+
 pub async fn start_api_server(agent: ComplianceAgent, port: u16) -> Result<(), AgentError> {
+    // Admin sub-router. Routes are only mounted when ADMIN_API_TOKEN is
+    // configured — without it, the paths don't exist at all (404 rather
+    // than 401), so an operator who hasn't opted in can't fingerprint
+    // the surface area.
+    let admin_router: Router = if agent.config.admin_api_token.is_some() {
+        tracing::info!("Admin API enabled — /api/v1/admin/* mounted behind ADMIN_API_TOKEN bearer");
+        Router::new()
+            .route(
+                "/api/v1/admin/tenants",
+                get(handlers::admin::list_tenant_dbs),
+            )
+            .route(
+                "/api/v1/admin/tenants/{tenant_id}",
+                delete(handlers::admin::drop_tenant_db),
+            )
+            .layer(middleware::from_fn(handlers::admin::require_admin_token))
+    } else {
+        Router::new()
+    };
+
     let mut app = routes::build_router()
+        .merge(admin_router)
         .layer(Extension(Arc::new(agent.clone())))
         .layer(CorsLayer::permissive())
-        .layer(TraceLayer::new_for_http());
+        .layer(TraceLayer::new_for_http())
+        // Security headers (defense-in-depth, primary enforcement via Traefik)
+        .layer(SetResponseHeaderLayer::overriding(
+            axum::http::header::STRICT_TRANSPORT_SECURITY,
+            HeaderValue::from_static("max-age=31536000; includeSubDomains"),
+        ))
+        .layer(SetResponseHeaderLayer::overriding(
+            axum::http::header::X_FRAME_OPTIONS,
+            HeaderValue::from_static("DENY"),
+        ))
+        .layer(SetResponseHeaderLayer::overriding(
+            axum::http::header::X_CONTENT_TYPE_OPTIONS,
+            HeaderValue::from_static("nosniff"),
+        ))
+        .layer(SetResponseHeaderLayer::overriding(
+            axum::http::header::REFERRER_POLICY,
+            HeaderValue::from_static("strict-origin-when-cross-origin"),
+        ));
 
     if let (Some(kc_url), Some(kc_realm)) =
         (&agent.config.keycloak_url, &agent.config.keycloak_realm)
@@ -25,11 +104,22 @@ pub async fn start_api_server(agent: ComplianceAgent, port: u16) -> Result<(), A
             jwks_url,
         };
         tracing::info!("Keycloak JWT auth enabled for realm '{kc_realm}'");
+        // Layers execute outermost-first. Extension(jwks_state) must run
+        // before require_jwt_auth so the middleware can read it; the
+        // status gate runs after JWT so TenantContext is in extensions.
         app = app
-            .layer(Extension(jwks_state))
-            .layer(middleware::from_fn(require_jwt_auth));
+            .layer(middleware::from_fn(require_tenant_status))
+            .layer(middleware::from_fn(require_jwt_auth))
+            .layer(Extension(jwks_state));
     } else {
-        tracing::warn!("Keycloak not configured - API endpoints are unprotected");
+        let tenant_id =
+            std::env::var("DEV_TENANT_ID").unwrap_or_else(|_| DEFAULT_DEV_TENANT_ID.to_string());
+        tracing::warn!(
+            tenant_id = %tenant_id,
+            "Keycloak not configured — running unauthenticated against the dev tenant. \
+             DO NOT use in any environment with real customer data."
+        );
+        app = app.layer(middleware::from_fn(inject_dev_tenant));
     }
 
     let addr = format!("0.0.0.0:{port}");

compliance-agent/src/classify/firmware.rs

@@ -0,0 +1,217 @@
+//! Firmware classification via tramiton.
+//!
+//! tramiton is the company's firmware build/repro engine; we do not re-implement
+//! its detection. We depend on `tramiton-core` directly (same-company IP) and run
+//! its provider analysis in-process behind a [`FirmwareDetector`] port, mapping
+//! tramiton's `BuildPlan` onto a [`TargetType`]. A deterministic
+//! [`MockFirmwareDetector`] backs the tests so CI unit tests need neither the
+//! tramiton sources nor a real firmware tree.
+
+use std::path::Path;
+
+use compliance_core::error::CoreError;
+use compliance_core::models::{DetectedFact, TargetType};
+use compliance_core::traits::ClassifierVerdict;
+
+/// A minimal firmware-detection summary, mapped from tramiton's `BuildPlan`.
+/// Kept small and tramiton-independent so the classifier and the test mock don't
+/// need to construct a full tramiton plan.
+#[derive(Debug, Clone, Default)]
+pub struct FirmwareDetection {
+    /// The detecting provider (e.g. `zephyr`, `cmake`, `source-archaeology`).
+    pub provider: String,
+    /// Detection confidence: `low` | `medium` | `high`.
+    pub confidence: String,
+    /// Build-system label (e.g. `Zephyr`, `ESP-IDF`, `CMake`).
+    pub build_system: String,
+    /// Framework, when known (`zephyr`, `esp-idf`, `bare-metal`, ...).
+    pub framework: Option<String>,
+    /// Target board / MCU / arch.
+    pub target: FirmwareTarget,
+    /// Unresolved gaps in the plan.
+    pub gaps: Vec<String>,
+}
+
+/// The detected firmware target (board / MCU / arch).
+#[derive(Debug, Clone, Default)]
+pub struct FirmwareTarget {
+    /// Board name.
+    pub board: Option<String>,
+    /// MCU part.
+    pub mcu: Option<String>,
+    /// Architecture.
+    pub arch: Option<String>,
+}
+
+/// A source of tramiton firmware detection.
+#[allow(async_fn_in_trait)]
+pub trait FirmwareDetector: Send + Sync {
+    /// Run detection over a path, returning a firmware detection if tramiton
+    /// could form a build plan.
+    async fn detect(&self, path: &Path) -> Result<Option<FirmwareDetection>, CoreError>;
+}
+
+/// Uses `tramiton-core` in-process. The analysis is blocking (filesystem walk),
+/// so it runs on a blocking thread to avoid stalling the async runtime. A path
+/// with no recognizable build system yields `Ok(None)`.
+pub struct TramitonNative;
+
+impl FirmwareDetector for TramitonNative {
+    async fn detect(&self, path: &Path) -> Result<Option<FirmwareDetection>, CoreError> {
+        let path = path.to_path_buf();
+        let plan = tokio::task::spawn_blocking(move || {
+            let repo = tramiton_core::Repo::new(&path);
+            tramiton_core::provider::analyze(&repo)
+        })
+        .await
+        .map_err(|e| CoreError::Other(format!("tramiton detect task join error: {e}")))?
+        .map_err(|e| CoreError::Other(format!("tramiton analyze error: {e}")))?;
+        Ok(plan.map(|bp| detection_from_build_plan(&bp)))
+    }
+}
+
+/// Map tramiton's `BuildPlan` onto our minimal detection summary.
+fn detection_from_build_plan(bp: &tramiton_core::BuildPlan) -> FirmwareDetection {
+    FirmwareDetection {
+        provider: bp.provider.clone(),
+        confidence: bp.confidence.to_string(),
+        build_system: bp.build_system.label().to_string(),
+        framework: bp.framework.clone(),
+        target: FirmwareTarget {
+            board: bp.target.board.clone(),
+            mcu: bp.target.mcu.clone(),
+            arch: bp.target.arch.clone(),
+        },
+        gaps: bp.gaps.clone(),
+    }
+}
+
+/// Map a firmware detection to a target type. Framework/build-system signals
+/// distinguish RTOS from bare-metal from Yocto.
+pub fn detection_to_target_type(det: &FirmwareDetection) -> TargetType {
+    let framework = det.framework.as_deref().unwrap_or("").to_lowercase();
+    let build_system = det.build_system.to_lowercase();
+    let signal = format!("{framework} {build_system} {}", det.provider.to_lowercase());
+
+    const RTOS: [&str; 6] = ["zephyr", "esp-idf", "freertos", "nuttx", "riot", "chibios"];
+    if signal.contains("bitbake") || signal.contains("yocto") || signal.contains("openembedded") {
+        TargetType::EmbeddedLinuxYocto
+    } else if RTOS.iter().any(|k| signal.contains(k)) {
+        TargetType::FirmwareRtos
+    } else {
+        TargetType::FirmwareBareMetal
+    }
+}
+
+/// Map tramiton's confidence label to a `[0,1]` score.
+fn confidence_score(label: &str) -> f32 {
+    match label.to_lowercase().as_str() {
+        "high" => 0.9,
+        "medium" => 0.6,
+        "low" => 0.3,
+        _ => 0.4,
+    }
+}
+
+/// Turn a firmware detection into a classifier verdict, carrying the MCU / board
+/// / build-system as facts.
+pub fn detection_to_verdict(det: &FirmwareDetection) -> ClassifierVerdict {
+    let target_type = detection_to_target_type(det);
+    let mut facts = vec![DetectedFact::new(
+        "build_system",
+        det.build_system.clone(),
+        "tramiton",
+    )];
+    if let Some(fw) = &det.framework {
+        facts.push(DetectedFact::new("framework", fw.clone(), "tramiton"));
+    }
+    if let Some(mcu) = &det.target.mcu {
+        facts.push(DetectedFact::new("mcu", mcu.clone(), "tramiton"));
+    }
+    if let Some(board) = &det.target.board {
+        facts.push(DetectedFact::new("board", board.clone(), "tramiton"));
+    }
+    if let Some(arch) = &det.target.arch {
+        facts.push(DetectedFact::new("arch", arch.clone(), "tramiton"));
+    }
+    ClassifierVerdict {
+        target_type,
+        confidence: confidence_score(&det.confidence),
+        facts,
+        rationale: format!(
+            "tramiton detected build system '{}'{}",
+            det.build_system,
+            det.framework
+                .as_ref()
+                .map(|f| format!(" (framework {f})"))
+                .unwrap_or_default()
+        ),
+    }
+}
+
+/// A deterministic [`FirmwareDetector`] for tests — returns a preset detection.
+pub struct MockFirmwareDetector {
+    /// The detection to return (or `None` for "no detection").
+    pub detection: Option<FirmwareDetection>,
+}
+
+impl FirmwareDetector for MockFirmwareDetector {
+    async fn detect(&self, _path: &Path) -> Result<Option<FirmwareDetection>, CoreError> {
+        Ok(self.detection.clone())
+    }
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+
+    fn detection(build_system: &str, framework: Option<&str>) -> FirmwareDetection {
+        FirmwareDetection {
+            provider: build_system.to_string(),
+            confidence: "high".to_string(),
+            build_system: build_system.to_string(),
+            framework: framework.map(|s| s.to_string()),
+            target: FirmwareTarget {
+                mcu: Some("stm32f429".to_string()),
+                ..Default::default()
+            },
+            gaps: Vec::new(),
+        }
+    }
+
+    #[test]
+    fn zephyr_maps_to_rtos() {
+        assert_eq!(
+            detection_to_target_type(&detection("zephyr", Some("zephyr"))),
+            TargetType::FirmwareRtos
+        );
+    }
+
+    #[test]
+    fn bare_cmake_maps_to_bare_metal() {
+        assert_eq!(
+            detection_to_target_type(&detection("cmake", Some("bare-metal"))),
+            TargetType::FirmwareBareMetal
+        );
+    }
+
+    #[test]
+    fn bitbake_maps_to_yocto() {
+        assert_eq!(
+            detection_to_target_type(&detection("bitbake", None)),
+            TargetType::EmbeddedLinuxYocto
+        );
+    }
+
+    #[test]
+    fn verdict_carries_mcu_fact_and_confidence() {
+        let v = detection_to_verdict(&detection("esp-idf", Some("esp-idf")));
+        assert_eq!(v.target_type, TargetType::FirmwareRtos);
+        assert!((v.confidence - 0.9).abs() < f32::EPSILON);
+        assert!(v
+            .facts
+            .iter()
+            .any(|f| f.key == "mcu" && f.value == "stm32f429"));
+    }
+}

compliance-agent/src/classify/language.rs

@@ -0,0 +1,357 @@
+//! Heuristic target-type classification from artifact kinds and source markers.
+//!
+//! Complements the tramiton firmware detector: this handles web / backend /
+//! mobile / desktop / PLC by sniffing manifest files and file extensions in the
+//! ingested code trees, plus strong priors from the artifact kinds themselves
+//! (a PLC-project artifact is a PLC target; an `.ipa` is an iOS app).
+
+use std::collections::HashSet;
+use std::fs;
+use std::path::Path;
+
+use compliance_core::error::CoreError;
+use compliance_core::models::{ArtifactKind, DetectedFact, TargetType};
+use compliance_core::traits::{ClassificationInput, ClassifierVerdict, TargetClassifier};
+
+/// Max directory depth scanned for marker files.
+const SCAN_DEPTH: usize = 2;
+
+/// Markers collected from a code tree.
+#[derive(Default)]
+struct Markers {
+    files: HashSet<String>,
+    dirs: HashSet<String>,
+    exts: HashSet<String>,
+}
+
+impl Markers {
+    fn has_file(&self, name: &str) -> bool {
+        self.files.contains(name)
+    }
+    fn has_ext(&self, ext: &str) -> bool {
+        self.exts.contains(ext)
+    }
+    fn any_dir_ends_with(&self, suffix: &str) -> bool {
+        self.dirs.iter().any(|d| d.ends_with(suffix))
+    }
+}
+
+/// Recursively collect marker file/dir/extension names up to [`SCAN_DEPTH`].
+fn collect_markers(root: &Path) -> Markers {
+    let mut m = Markers::default();
+    scan_dir(root, 0, &mut m);
+    m
+}
+
+fn scan_dir(dir: &Path, depth: usize, m: &mut Markers) {
+    let Ok(entries) = fs::read_dir(dir) else {
+        return;
+    };
+    for entry in entries.flatten() {
+        let path = entry.path();
+        let name = entry.file_name().to_string_lossy().to_lowercase();
+        if path.is_dir() {
+            m.dirs.insert(name);
+            if depth < SCAN_DEPTH {
+                scan_dir(&path, depth + 1, m);
+            }
+        } else {
+            if let Some(ext) = path.extension() {
+                m.exts.insert(ext.to_string_lossy().to_lowercase());
+            }
+            m.files.insert(name);
+        }
+    }
+}
+
+/// Whether a `package.json` at `root` looks like a front-end app.
+fn package_json_is_frontend(root: &Path) -> bool {
+    let Ok(content) = fs::read_to_string(root.join("package.json")) else {
+        return false;
+    };
+    let c = content.to_lowercase();
+    ["react", "next", "vue", "@angular", "svelte", "vite"]
+        .iter()
+        .any(|f| c.contains(f))
+}
+
+/// The heuristic classifier: artifact-kind priors + source-tree markers.
+pub struct HeuristicClassifier;
+
+impl HeuristicClassifier {
+    /// Verdicts from the artifact kinds alone (no filesystem needed).
+    fn kind_priors(&self, input: &ClassificationInput<'_>) -> Vec<ClassifierVerdict> {
+        let mut out = Vec::new();
+        for a in input.artifacts {
+            let lower = a.source_ref.to_lowercase();
+            match a.kind {
+                ArtifactKind::PlcProject => out.push(verdict(
+                    TargetType::PlcSps,
+                    0.85,
+                    "PLC project artifact",
+                    vec![],
+                )),
+                ArtifactKind::MobilePackage => {
+                    let (tt, why) = if lower.ends_with(".ipa") {
+                        (TargetType::IosApp, "iOS package (.ipa)")
+                    } else {
+                        (TargetType::AndroidApp, "Android package (.apk/.aab)")
+                    };
+                    out.push(verdict(tt, 0.85, why, vec![]));
+                }
+                ArtifactKind::ContainerImage => out.push(verdict(
+                    TargetType::BackendService,
+                    0.4,
+                    "container image",
+                    vec![],
+                )),
+                ArtifactKind::FirmwareImage => out.push(verdict(
+                    TargetType::FirmwareBareMetal,
+                    0.35,
+                    "firmware image (pending tramiton detection)",
+                    vec![],
+                )),
+                ArtifactKind::LiveUrl if input.artifacts.len() == 1 => {
+                    out.push(verdict(TargetType::WebApp, 0.3, "live URL only", vec![]))
+                }
+                _ => {}
+            }
+        }
+        out
+    }
+
+    /// Verdicts from scanning the ingested code trees for manifest markers.
+    fn source_verdicts(&self, input: &ClassificationInput<'_>) -> Vec<ClassifierVerdict> {
+        let mut out = Vec::new();
+        for a in input.artifacts {
+            if !matches!(a.kind, ArtifactKind::GitRepo | ArtifactKind::SourceArchive) {
+                continue;
+            }
+            let Some(path) = input.working_paths.get(&a.id) else {
+                continue;
+            };
+            let m = collect_markers(path);
+
+            // Mobile (checked first — strongest signal).
+            if m.has_file("androidmanifest.xml") || m.has_ext("apk") || m.has_ext("aab") {
+                out.push(verdict(
+                    TargetType::AndroidApp,
+                    0.8,
+                    "Android manifest / gradle",
+                    facts_lang("kotlin/java"),
+                ));
+            }
+            if m.any_dir_ends_with(".xcodeproj")
+                || m.has_file("info.plist")
+                || m.has_file("podfile")
+                || m.has_ext("ipa")
+            {
+                out.push(verdict(
+                    TargetType::IosApp,
+                    0.8,
+                    "Xcode project / Info.plist",
+                    facts_lang("swift/objc"),
+                ));
+            }
+            // Desktop.
+            if m.has_ext("sln")
+                || m.has_ext("csproj")
+                || m.has_ext("vcxproj")
+                || m.has_ext("desktop")
+            {
+                out.push(verdict(
+                    TargetType::DesktopApp,
+                    0.7,
+                    "desktop project files",
+                    facts_lang("dotnet/native"),
+                ));
+            }
+            // PLC.
+            if m.has_ext("st") {
+                out.push(verdict(
+                    TargetType::PlcSps,
+                    0.8,
+                    "Structured Text sources",
+                    facts_lang("iec-61131-3"),
+                ));
+            }
+            // Web vs backend from package.json.
+            if m.has_file("package.json") {
+                if package_json_is_frontend(path) {
+                    out.push(verdict(
+                        TargetType::WebApp,
+                        0.65,
+                        "package.json with a front-end framework",
+                        facts_lang("javascript"),
+                    ));
+                } else {
+                    out.push(verdict(
+                        TargetType::BackendService,
+                        0.55,
+                        "package.json (no front-end framework)",
+                        facts_lang("javascript"),
+                    ));
+                }
+            }
+            // Backend languages.
+            for (file, lang) in [
+                ("cargo.toml", "rust"),
+                ("go.mod", "go"),
+                ("pom.xml", "java"),
+                ("requirements.txt", "python"),
+                ("pyproject.toml", "python"),
+            ] {
+                if m.has_file(file) {
+                    out.push(verdict(
+                        TargetType::BackendService,
+                        0.6,
+                        "backend build manifest",
+                        facts_lang(lang),
+                    ));
+                }
+            }
+            // Container-only.
+            if m.has_file("dockerfile") && out.is_empty() {
+                out.push(verdict(
+                    TargetType::BackendService,
+                    0.4,
+                    "Dockerfile",
+                    facts_lang("container"),
+                ));
+            }
+        }
+        out
+    }
+}
+
+impl TargetClassifier for HeuristicClassifier {
+    fn name(&self) -> &str {
+        "heuristic"
+    }
+
+    async fn classify(
+        &self,
+        input: &ClassificationInput<'_>,
+    ) -> Result<Vec<ClassifierVerdict>, CoreError> {
+        let mut out = self.kind_priors(input);
+        out.extend(self.source_verdicts(input));
+        Ok(out)
+    }
+}
+
+fn verdict(
+    target_type: TargetType,
+    confidence: f32,
+    rationale: &str,
+    facts: Vec<DetectedFact>,
+) -> ClassifierVerdict {
+    ClassifierVerdict {
+        target_type,
+        confidence,
+        facts,
+        rationale: rationale.to_string(),
+    }
+}
+
+fn facts_lang(lang: &str) -> Vec<DetectedFact> {
+    vec![DetectedFact::new("language", lang, "heuristic")]
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use compliance_core::models::Artifact;
+    use std::collections::HashMap;
+    use std::path::PathBuf;
+
+    struct Scratch(PathBuf);
+    impl Scratch {
+        fn new() -> Self {
+            let p = std::env::temp_dir().join(format!("cs-classify-{}", uuid::Uuid::new_v4()));
+            fs::create_dir_all(&p).expect("mkdir");
+            Self(p)
+        }
+    }
+    impl Drop for Scratch {
+        fn drop(&mut self) {
+            let _ = fs::remove_dir_all(&self.0);
+        }
+    }
+
+    async fn classify_tree(setup: impl FnOnce(&Path)) -> Vec<ClassifierVerdict> {
+        let scratch = Scratch::new();
+        setup(&scratch.0);
+        let artifact = Artifact::git_repo("https://git/x", "main");
+        let mut wp = HashMap::new();
+        wp.insert(artifact.id.clone(), scratch.0.clone());
+        let artifacts = vec![artifact];
+        let input = ClassificationInput {
+            artifacts: &artifacts,
+            working_paths: &wp,
+            description: None,
+        };
+        HeuristicClassifier
+            .classify(&input)
+            .await
+            .expect("classify")
+    }
+
+    #[tokio::test]
+    async fn frontend_package_json_is_webapp() {
+        let v = classify_tree(|root| {
+            fs::write(
+                root.join("package.json"),
+                r#"{"dependencies":{"react":"18"}}"#,
+            )
+            .unwrap();
+        })
+        .await;
+        assert!(v.iter().any(|x| x.target_type == TargetType::WebApp));
+    }
+
+    #[tokio::test]
+    async fn cargo_toml_is_backend() {
+        let v = classify_tree(|root| {
+            fs::write(root.join("Cargo.toml"), "[package]\nname='x'").unwrap();
+        })
+        .await;
+        assert!(v
+            .iter()
+            .any(|x| x.target_type == TargetType::BackendService));
+    }
+
+    #[tokio::test]
+    async fn android_manifest_is_android() {
+        let v = classify_tree(|root| {
+            fs::write(root.join("AndroidManifest.xml"), "<manifest/>").unwrap();
+        })
+        .await;
+        assert!(v.iter().any(|x| x.target_type == TargetType::AndroidApp));
+    }
+
+    #[tokio::test]
+    async fn structured_text_is_plc() {
+        let v = classify_tree(|root| {
+            fs::write(root.join("main.st"), "PROGRAM main END_PROGRAM").unwrap();
+        })
+        .await;
+        assert!(v.iter().any(|x| x.target_type == TargetType::PlcSps));
+    }
+
+    #[tokio::test]
+    async fn ipa_artifact_prior_is_ios() {
+        let artifacts = vec![Artifact::mobile_package("app.ipa")];
+        let wp = HashMap::new();
+        let input = ClassificationInput {
+            artifacts: &artifacts,
+            working_paths: &wp,
+            description: None,
+        };
+        let v = HeuristicClassifier
+            .classify(&input)
+            .await
+            .expect("classify");
+        assert!(v.iter().any(|x| x.target_type == TargetType::IosApp));
+    }
+}

compliance-agent/src/classify/mod.rs

@@ -0,0 +1,226 @@
+//! Target classification.
+//!
+//! Runs the classifier registry over a target's artifacts and their ingested
+//! working paths, then merges and ranks the verdicts into a [`Classification`].
+//! The registry is the heuristic classifier (artifact kinds + source markers)
+//! plus the tramiton firmware detector (behind a [`FirmwareDetector`] port).
+
+mod firmware;
+mod language;
+
+pub use firmware::{
+    FirmwareDetection, FirmwareDetector, FirmwareTarget, MockFirmwareDetector, TramitonNative,
+};
+pub use language::HeuristicClassifier;
+
+use std::collections::HashMap;
+use std::path::PathBuf;
+
+use compliance_core::error::CoreError;
+use compliance_core::models::{
+    ArtifactKind, Classification, DetectedFact, OnboardedTarget, TargetType, TargetTypeCandidate,
+};
+use compliance_core::traits::{ClassificationInput, ClassifierVerdict, TargetClassifier};
+
+use firmware::detection_to_verdict;
+
+/// Classify a target from its artifacts and their ingested working paths, using
+/// the heuristic classifier plus the tramiton firmware detector. Verdicts are
+/// merged (max confidence per target type) and ranked into a [`Classification`].
+pub async fn classify_target<D: FirmwareDetector>(
+    target: &OnboardedTarget,
+    working_paths: &HashMap<String, PathBuf>,
+    firmware_detector: &D,
+) -> Result<Classification, CoreError> {
+    let input = ClassificationInput {
+        artifacts: &target.artifacts,
+        working_paths,
+        description: target.description.as_deref(),
+    };
+
+    let mut verdicts = Vec::new();
+    let mut detected_by = Vec::new();
+
+    let heuristic = HeuristicClassifier.classify(&input).await?;
+    if !heuristic.is_empty() {
+        detected_by.push("heuristic".to_string());
+    }
+    verdicts.extend(heuristic);
+
+    // Tramiton firmware detection over firmware / code working paths.
+    let mut tramiton_used = false;
+    for artifact in &target.artifacts {
+        if !matches!(
+            artifact.kind,
+            ArtifactKind::FirmwareImage | ArtifactKind::GitRepo | ArtifactKind::SourceArchive
+        ) {
+            continue;
+        }
+        let Some(path) = working_paths.get(&artifact.id) else {
+            continue;
+        };
+        if let Some(detection) = firmware_detector.detect(path).await? {
+            verdicts.push(detection_to_verdict(&detection));
+            tramiton_used = true;
+        }
+    }
+    if tramiton_used {
+        detected_by.push("tramiton".to_string());
+    }
+
+    Ok(rank(verdicts, detected_by, target.target_type))
+}
+
+/// Merge verdicts by target type (keeping the max confidence and its rationale),
+/// dedupe facts, rank by descending confidence, and assemble a [`Classification`].
+/// Falls back to the declared type when no verdict is produced.
+fn rank(
+    verdicts: Vec<ClassifierVerdict>,
+    detected_by: Vec<String>,
+    fallback: TargetType,
+) -> Classification {
+    let mut best: HashMap<TargetType, (f32, String)> = HashMap::new();
+    let mut facts: Vec<DetectedFact> = Vec::new();
+    for verdict in verdicts {
+        for fact in verdict.facts {
+            if !facts
+                .iter()
+                .any(|e| e.key == fact.key && e.value == fact.value)
+            {
+                facts.push(fact);
+            }
+        }
+        let entry = best
+            .entry(verdict.target_type)
+            .or_insert((0.0, String::new()));
+        if verdict.confidence > entry.0 {
+            *entry = (verdict.confidence, verdict.rationale);
+        }
+    }
+
+    let mut candidates: Vec<TargetTypeCandidate> = best
+        .into_iter()
+        .map(
+            |(target_type, (confidence, rationale))| TargetTypeCandidate {
+                target_type,
+                confidence,
+                rationale,
+            },
+        )
+        .collect();
+    // Descending confidence; ties broken by type name for deterministic ordering.
+    candidates.sort_by(|a, b| {
+        b.confidence
+            .partial_cmp(&a.confidence)
+            .unwrap_or(std::cmp::Ordering::Equal)
+            .then_with(|| a.target_type.to_string().cmp(&b.target_type.to_string()))
+    });
+
+    let suggested = candidates
+        .first()
+        .map(|c| c.target_type)
+        .unwrap_or(fallback);
+
+    Classification {
+        suggested,
+        candidates,
+        facts,
+        detected_by,
+        detected_at: chrono::Utc::now(),
+        confirmed: false,
+    }
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use compliance_core::models::Artifact;
+    use std::fs;
+    use std::path::Path;
+
+    struct Scratch(PathBuf);
+    impl Scratch {
+        fn new() -> Self {
+            let p = std::env::temp_dir().join(format!("cs-classify-mod-{}", uuid::Uuid::new_v4()));
+            fs::create_dir_all(&p).expect("mkdir");
+            Self(p)
+        }
+    }
+    impl Drop for Scratch {
+        fn drop(&mut self) {
+            let _ = fs::remove_dir_all(&self.0);
+        }
+    }
+
+    fn no_firmware() -> MockFirmwareDetector {
+        MockFirmwareDetector { detection: None }
+    }
+
+    #[tokio::test]
+    async fn backend_repo_classifies_as_backend() {
+        let scratch = Scratch::new();
+        fs::write(scratch.0.join("go.mod"), "module x").unwrap();
+
+        let artifact = Artifact::git_repo("https://git/x", "main");
+        let mut wp = HashMap::new();
+        wp.insert(artifact.id.clone(), scratch.0.clone());
+        let mut target = OnboardedTarget::new("x".to_string(), TargetType::WebApp);
+        target.artifacts.push(artifact);
+
+        let c = classify_target(&target, &wp, &no_firmware())
+            .await
+            .expect("classify");
+        assert_eq!(c.suggested, TargetType::BackendService);
+        assert!(c.detected_by.contains(&"heuristic".to_string()));
+        assert!(!c.confirmed);
+    }
+
+    #[tokio::test]
+    async fn firmware_detector_verdict_ranks_top() {
+        let scratch = Scratch::new();
+        fs::write(scratch.0.join("fw.bin"), b"x").unwrap();
+
+        let artifact =
+            Artifact::firmware_image(scratch.0.join("fw.bin").to_string_lossy().to_string());
+        let mut wp = HashMap::new();
+        wp.insert(artifact.id.clone(), scratch.0.clone());
+        let mut target = OnboardedTarget::new("fw".to_string(), TargetType::FirmwareBareMetal);
+        target.artifacts.push(artifact);
+
+        let detector = MockFirmwareDetector {
+            detection: Some(FirmwareDetection {
+                provider: "zephyr".to_string(),
+                confidence: "high".to_string(),
+                build_system: "zephyr".to_string(),
+                framework: Some("zephyr".to_string()),
+                target: FirmwareTarget {
+                    mcu: Some("nrf52840".to_string()),
+                    ..Default::default()
+                },
+                gaps: vec![],
+            }),
+        };
+
+        let c = classify_target(&target, &wp, &detector)
+            .await
+            .expect("classify");
+        // tramiton's high-confidence RTOS verdict beats the weak firmware prior.
+        assert_eq!(c.suggested, TargetType::FirmwareRtos);
+        assert!(c.detected_by.contains(&"tramiton".to_string()));
+        assert!(c.facts.iter().any(|f| f.key == "mcu"));
+    }
+
+    #[tokio::test]
+    async fn no_signal_falls_back_to_declared_type() {
+        let scratch = Scratch::new();
+        let _ = Path::new(&scratch.0);
+        let target = OnboardedTarget::new("empty".to_string(), TargetType::DesktopApp);
+        let wp = HashMap::new();
+        let c = classify_target(&target, &wp, &no_firmware())
+            .await
+            .expect("classify");
+        assert_eq!(c.suggested, TargetType::DesktopApp);
+        assert!(c.candidates.is_empty());
+    }
+}

compliance-agent/src/config.rs

@@ -42,9 +42,17 @@ pub fn load_config() -> Result<AgentConfig, AgentError> {
             .unwrap_or(3001),
         scan_schedule: env_var_opt("SCAN_SCHEDULE").unwrap_or_else(|| "0 0 */6 * * *".to_string()),
         cve_monitor_schedule: env_var_opt("CVE_MONITOR_SCHEDULE")
-            .unwrap_or_else(|| "0 0 0 * * *".to_string()),
+            .unwrap_or_else(|| "0 0 * * * *".to_string()),
         git_clone_base_path: env_var_opt("GIT_CLONE_BASE_PATH")
             .unwrap_or_else(|| "/tmp/compliance-scanner/repos".to_string()),
+        artifact_store_base_path: env_var_opt("ARTIFACT_STORE_BASE_PATH")
+            .unwrap_or_else(|| "/data/compliance-scanner/artifacts".to_string()),
+        // Defaults ON: the unified onboarded-target pipeline is now the primary
+        // path (no legacy `repositories` data in production). Set
+        // `UNIFIED_PIPELINE=0` to fall back to the legacy repository pipeline.
+        unified_pipeline: env_var_opt("UNIFIED_PIPELINE")
+            .map(|v| v == "1" || v.eq_ignore_ascii_case("true"))
+            .unwrap_or(true),
         ssh_key_path: env_var_opt("SSH_KEY_PATH")
             .unwrap_or_else(|| "/data/compliance-scanner/ssh/id_ed25519".to_string()),
         keycloak_url: env_var_opt("KEYCLOAK_URL"),
@@ -54,7 +62,12 @@ pub fn load_config() -> Result<AgentConfig, AgentError> {
         pentest_verification_email: env_var_opt("PENTEST_VERIFICATION_EMAIL"),
         pentest_imap_host: env_var_opt("PENTEST_IMAP_HOST"),
         pentest_imap_port: env_var_opt("PENTEST_IMAP_PORT").and_then(|p| p.parse().ok()),
+        pentest_imap_tls: env_var_opt("PENTEST_IMAP_TLS")
+            .map(|v| v == "1" || v.eq_ignore_ascii_case("true"))
+            .unwrap_or(true),
         pentest_imap_username: env_var_opt("PENTEST_IMAP_USERNAME"),
         pentest_imap_password: env_secret_opt("PENTEST_IMAP_PASSWORD"),
+        admin_api_token: env_secret_opt("ADMIN_API_TOKEN"),
+        tenant_registry_url: env_var_opt("TENANT_REGISTRY_URL"),
     })
 }

compliance-agent/src/database.rs

@@ -1,11 +1,233 @@
+use std::sync::Arc;
+
+use dashmap::DashMap;
 use mongodb::bson::doc;
 use mongodb::options::IndexOptions;
 use mongodb::{Client, Collection, IndexModel};
+use sha2::{Digest, Sha256};
 
 use compliance_core::models::*;
+use compliance_core::TenantContext;
 
 use crate::error::AgentError;
 
+/// Mongo enforces a 63-byte cap on database names (older clusters: 64
+/// on Linux, 63 on Windows; we target the conservative limit).
+const MAX_DB_NAME_LEN: usize = 63;
+
+/// Hex length of the SHA-256 truncation used for the hash fallback
+/// tenant DB name (16 bytes → 32 hex chars). 16 bytes gives ~2^64
+/// birthday-collision resistance — at our 10s-100s tenant scale this
+/// is effectively impossible to hit.
+const HASH_HEX_LEN: usize = 32;
+
+/// Largest `db_prefix` that still guarantees the hash-fallback name
+/// fits in the 63-byte cap: `prefix + "_" + 32 hex chars`.
+const MAX_PREFIX_LEN: usize = MAX_DB_NAME_LEN - 1 - HASH_HEX_LEN;
+
+/// Per-tenant Mongo connection broker (M7.2 isolation model).
+///
+/// Holds one [`Client`] and hands out [`Database`] handles physically
+/// scoped to `<db_prefix>_<tenant_id>`. The driver is the isolation
+/// boundary — a handle for tenant A cannot see tenant B's documents
+/// because it is connected to a different database, not because of an
+/// application-level filter.
+///
+/// Index creation runs idempotently the first time each tenant is seen
+/// in the process's lifetime. Mongo's `createIndex` is itself idempotent
+/// by index name; the in-memory `ensured` set just skips the round-trip.
+#[derive(Clone, Debug)]
+pub struct DatabasePool {
+    client: Client,
+    db_prefix: String,
+    ensured: Arc<DashMap<String, ()>>,
+}
+
+impl DatabasePool {
+    /// Connect to the cluster and prepare to hand out tenant databases
+    /// named `<db_prefix>_<tenant_id>`.
+    ///
+    /// Validates `db_prefix.len() <= MAX_PREFIX_LEN` so the
+    /// hash-fallback path is provably within Mongo's 63-byte db-name
+    /// cap. Refuses to construct a pool that could ever produce an
+    /// over-long name.
+    pub async fn connect(uri: &str, db_prefix: &str) -> Result<Self, AgentError> {
+        if db_prefix.len() > MAX_PREFIX_LEN {
+            return Err(AgentError::Other(format!(
+                "db_prefix '{db_prefix}' is {} chars; max is {MAX_PREFIX_LEN} so the \
+                 hash-fallback tenant DB name fits Mongo's {MAX_DB_NAME_LEN}-byte cap",
+                db_prefix.len()
+            )));
+        }
+        let client = Client::with_uri_str(uri).await?;
+        client
+            .database("admin")
+            .run_command(doc! { "ping": 1 })
+            .await?;
+        tracing::info!(
+            "MongoDB cluster reachable; per-tenant pool ready (db prefix '{db_prefix}')"
+        );
+        Ok(Self {
+            client,
+            db_prefix: db_prefix.to_string(),
+            ensured: Arc::new(DashMap::new()),
+        })
+    }
+
+    /// Return a [`Database`] scoped to this tenant. Ensures indexes on
+    /// first call per tenant (per process). Cheap on the hot path —
+    /// subsequent calls skip the round-trip.
+    pub async fn for_tenant(&self, ctx: &TenantContext) -> Result<Database, AgentError> {
+        self.for_tenant_id(&ctx.tenant_id).await
+    }
+
+    /// Like [`Self::for_tenant`] but accepts a bare tenant_id.
+    /// For background paths (scheduler, webhooks, pipeline orchestrators)
+    /// that don't have a full [`TenantContext`] but know which tenant
+    /// they're operating on (typically resolved from a URL path, a job
+    /// argument, or the registry).
+    pub async fn for_tenant_id(&self, tenant_id: &str) -> Result<Database, AgentError> {
+        let db_name = self.tenant_db_name(tenant_id);
+        let db = Database::from_database(self.client.database(&db_name));
+        // `DashMap::insert` returns the previous value; `None` means we
+        // were the first writer for this tenant_id and own the
+        // index-ensure work.
+        if self.ensured.insert(tenant_id.to_string(), ()).is_none() {
+            if let Err(e) = db.ensure_indexes().await {
+                // Roll the marker back so the next request retries.
+                self.ensured.remove(tenant_id);
+                return Err(e);
+            }
+            tracing::debug!(
+                tenant_id = %tenant_id,
+                db_name = %db_name,
+                "Indexes ensured for tenant database"
+            );
+        }
+        Ok(db)
+    }
+
+    /// Compute the Mongo database name for a tenant. Public for tests
+    /// and tenant offboarding (`pool.client().database(name).drop()`).
+    ///
+    /// Format: `<prefix>_<sanitized_tenant_id>` if it fits the 63-byte
+    /// cap, else `<prefix>_<sha256-16-byte-hex-of-tenant_id>`. The
+    /// `db_prefix` length invariant established at [`Self::connect`]
+    /// guarantees the hash-fallback name always fits — no runtime
+    /// assertion needed.
+    ///
+    /// Collision resistance: the hash fallback is a 16-byte SHA-256
+    /// truncation, which gives ~2^64 birthday-collision resistance. At
+    /// our 10s–100s tenant scale the probability of two tenant_ids
+    /// colliding is effectively zero. (8-byte truncation would have
+    /// been ~2^32 — too close for comfort on a regulated product.)
+    pub fn tenant_db_name(&self, tenant_id: &str) -> String {
+        let sanitized = sanitize_tenant_id(tenant_id);
+        let natural = format!("{}_{}", self.db_prefix, sanitized);
+        if natural.len() <= MAX_DB_NAME_LEN {
+            natural
+        } else {
+            let mut hasher = Sha256::new();
+            hasher.update(tenant_id.as_bytes());
+            let digest = hasher.finalize();
+            let suffix = hex::encode(&digest[..HASH_HEX_LEN / 2]);
+            format!("{}_{}", self.db_prefix, suffix)
+        }
+    }
+
+    /// Raw client handle. Reserved for cross-tenant admin flows that
+    /// must opt in explicitly (tenant listing, drop-on-offboard).
+    pub fn client(&self) -> &Client {
+        &self.client
+    }
+
+    /// Cross-tenant admin database used by features that intentionally
+    /// span tenants (today: MCP bearer tokens — each token row carries
+    /// a `tenant_id` and the MCP server reads them to route requests).
+    ///
+    /// The name `<db_prefix>__admin` (double underscore) is reserved —
+    /// the sanitizer never produces it for a normal tenant DB because
+    /// the natural format is `<db_prefix>_<sanitized_tenant_id>` (one
+    /// underscore) and tenant_ids would have to start with `_admin` to
+    /// collide. New tenant provisioning should reject such ids.
+    pub fn admin_db(&self) -> mongodb::Database {
+        self.client.database(&self.admin_db_name())
+    }
+
+    /// Name of the admin database — public so tests / operators can
+    /// drop it via the raw client.
+    pub fn admin_db_name(&self) -> String {
+        format!("{}__admin", self.db_prefix)
+    }
+
+    /// List every Mongo database currently belonging to this pool,
+    /// identified by the `<db_prefix>_` prefix. The result is the raw
+    /// database names — opening one for offboarding/cleanup goes
+    /// through [`Self::client`].
+    ///
+    /// Note: hashed-fallback names (very long tenant_ids) lose the
+    /// original tenant_id at the cluster level — we know a database
+    /// exists for *some* tenant but not which one. In practice
+    /// tenant_ids are UUIDs (36 chars) and never hit the fallback,
+    /// so this is a theoretical concern, not an operational one.
+    pub async fn list_tenant_db_names(&self) -> Result<Vec<String>, AgentError> {
+        let prefix = format!("{}_", self.db_prefix);
+        let names = self.client.list_database_names().await?;
+        Ok(names
+            .into_iter()
+            .filter(|n| n.starts_with(&prefix))
+            .collect())
+    }
+
+    /// Tenant ids for every provisioned tenant database, derived by stripping
+    /// the `<prefix>_` from the database names. Skips the admin database
+    /// (`<prefix>__admin`). Hash-fallback names (very long tenant_ids) are lost
+    /// at the cluster level and cannot be recovered here — in practice tenant
+    /// ids are UUIDs and never hit that path. Used by the migration CLI's
+    /// `--all` mode.
+    pub async fn list_tenant_ids(&self) -> Result<Vec<String>, AgentError> {
+        let prefix = format!("{}_", self.db_prefix);
+        Ok(self
+            .list_tenant_db_names()
+            .await?
+            .into_iter()
+            .filter_map(|n| n.strip_prefix(&prefix).map(str::to_string))
+            .filter(|id| !id.starts_with('_'))
+            .collect())
+    }
+
+    /// Drop the database for a specific tenant. Used by GDPR delete
+    /// and tenant offboarding. Idempotent — dropping a non-existent
+    /// database is a no-op at the driver level.
+    ///
+    /// Also evicts the tenant from the in-memory `ensured` set so a
+    /// later re-provision triggers fresh `ensure_indexes`.
+    pub async fn drop_tenant(&self, tenant_id: &str) -> Result<(), AgentError> {
+        let db_name = self.tenant_db_name(tenant_id);
+        self.client.database(&db_name).drop().await?;
+        self.ensured.remove(tenant_id);
+        tracing::info!(
+            tenant_id = %tenant_id,
+            db_name = %db_name,
+            "Dropped tenant database"
+        );
+        Ok(())
+    }
+}
+
+/// Mongo database names disallow `/`, `\`, `.`, `"`, `$`, ` `, and NUL.
+/// breakpilot-dev tenant_ids are UUIDs so this is belt-and-braces, but
+/// it lets the pool tolerate any future tenant_id shape without surprise.
+fn sanitize_tenant_id(tenant_id: &str) -> String {
+    tenant_id
+        .chars()
+        .map(|c| match c {
+            '/' | '\\' | '.' | '"' | '$' | ' ' | '\0' => '_',
+            c => c,
+        })
+        .collect()
+}
+
 #[derive(Clone, Debug)]
 pub struct Database {
     inner: mongodb::Database,
@@ -20,6 +242,12 @@ impl Database {
         Ok(Self { inner: db })
     }
 
+    /// Wrap an already-resolved Mongo database. Used by [`DatabasePool`]
+    /// to hand out tenant-scoped handles without a fresh client per tenant.
+    pub(crate) fn from_database(inner: mongodb::Database) -> Self {
+        Self { inner }
+    }
+
     pub async fn ensure_indexes(&self) -> Result<(), AgentError> {
         // repositories: unique git_url
         self.repositories()
@@ -78,6 +306,25 @@ impl Database {
             )
             .await?;
 
+        // cve_notifications: unique cve_id + repo_id + package, status filter
+        self.cve_notifications()
+            .create_index(
+                IndexModel::builder()
+                    .keys(
+                        doc! { "cve_id": 1, "repo_id": 1, "package_name": 1, "package_version": 1 },
+                    )
+                    .options(IndexOptions::builder().unique(true).build())
+                    .build(),
+            )
+            .await?;
+        self.cve_notifications()
+            .create_index(
+                IndexModel::builder()
+                    .keys(doc! { "status": 1, "created_at": -1 })
+                    .build(),
+            )
+            .await?;
+
         // tracker_issues: unique finding_id
         self.tracker_issues()
             .create_index(
@@ -198,6 +445,36 @@ impl Database {
             )
             .await?;
 
+        // onboarded_targets: multikey on artifact source ref (webhook + dedupe
+        // lookup). Non-unique — "one git URL per tenant" is enforced in the
+        // create handler, since a unique multikey index on an array field has
+        // null-collision caveats.
+        self.onboarded_targets()
+            .create_index(
+                IndexModel::builder()
+                    .keys(doc! { "artifacts.source_ref": 1 })
+                    .build(),
+            )
+            .await?;
+
+        // onboarded_targets: multikey on artifact kind
+        self.onboarded_targets()
+            .create_index(
+                IndexModel::builder()
+                    .keys(doc! { "artifacts.kind": 1 })
+                    .build(),
+            )
+            .await?;
+
+        // onboarded_targets: target_type filter
+        self.onboarded_targets()
+            .create_index(
+                IndexModel::builder()
+                    .keys(doc! { "target_type": 1 })
+                    .build(),
+            )
+            .await?;
+
         tracing::info!("Database indexes ensured");
         Ok(())
     }
@@ -222,6 +499,12 @@ impl Database {
         self.inner.collection("cve_alerts")
     }
 
+    pub fn cve_notifications(
+        &self,
+    ) -> Collection<compliance_core::models::notification::CveNotification> {
+        self.inner.collection("cve_notifications")
+    }
+
     pub fn tracker_issues(&self) -> Collection<TrackerIssue> {
         self.inner.collection("tracker_issues")
     }
@@ -248,6 +531,20 @@ impl Database {
         self.inner.collection("dast_targets")
     }
 
+    /// The unified onboarding targets that replace `repositories` and
+    /// `dast_targets`. Ids are preserved from the legacy collections during
+    /// migration so downstream `repo_id` / `target_id` references keep resolving.
+    pub fn onboarded_targets(&self) -> Collection<OnboardedTarget> {
+        self.inner.collection("onboarded_targets")
+    }
+
+    /// A typed handle to an arbitrary collection by name. For bookkeeping
+    /// collections without a dedicated model (e.g. `schema_migrations`,
+    /// `onboarding_migration_log`).
+    pub fn collection_named<T: Send + Sync>(&self, name: &str) -> Collection<T> {
+        self.inner.collection(name)
+    }
+
     pub fn dast_scan_runs(&self) -> Collection<DastScanRun> {
         self.inner.collection("dast_scan_runs")
     }

compliance-agent/src/ingest/blob.rs

@@ -0,0 +1,154 @@
+//! Content-addressed blob storage and archive extraction for ingest.
+//!
+//! Blobs are stored at `<base>/blobs/<sha[0:2]>/<sha>` and deduplicated by
+//! digest; per-run working directories live under `<base>/work/`.
+
+use std::fs::{self, File};
+use std::io::{self, Read};
+use std::path::{Path, PathBuf};
+
+use sha2::{Digest, Sha256};
+
+use crate::error::AgentError;
+
+/// Read buffer size for streaming hashes/copies (64 KiB).
+const BUF_LEN: usize = 64 * 1024;
+
+/// Stream-hash a file with SHA-256, returning the lowercase-hex digest and the
+/// byte length. Streams so large firmware images never load fully into memory.
+pub fn hash_file(path: &Path) -> Result<(String, u64), AgentError> {
+    let mut file = File::open(path)?;
+    let mut hasher = Sha256::new();
+    let mut buf = [0u8; BUF_LEN];
+    let mut total: u64 = 0;
+    loop {
+        let n = file.read(&mut buf)?;
+        if n == 0 {
+            break;
+        }
+        hasher.update(&buf[..n]);
+        total += n as u64;
+    }
+    Ok((hex::encode(hasher.finalize()), total))
+}
+
+/// Copy `src` into the content-addressed blob store under `base`, returning the
+/// stored path. Idempotent: an already-present blob is not rewritten.
+pub fn store_file(base: &Path, src: &Path, sha: &str) -> Result<PathBuf, AgentError> {
+    if sha.len() < 2 {
+        return Err(AgentError::Other(format!("invalid content hash '{sha}'")));
+    }
+    let dir = base.join("blobs").join(&sha[0..2]);
+    fs::create_dir_all(&dir)?;
+    let dest = dir.join(sha);
+    if !dest.exists() {
+        fs::copy(src, &dest)?;
+    }
+    Ok(dest)
+}
+
+/// Extract a zip archive into `dest` (created if needed). `enclosed_name`
+/// sanitizes each entry path, so this is safe against zip-slip traversal.
+pub fn extract_zip(archive: &Path, dest: &Path) -> Result<(), AgentError> {
+    let file = File::open(archive)?;
+    let mut zip =
+        zip::ZipArchive::new(file).map_err(|e| AgentError::Other(format!("open zip: {e}")))?;
+    fs::create_dir_all(dest)?;
+    for i in 0..zip.len() {
+        let mut entry = zip
+            .by_index(i)
+            .map_err(|e| AgentError::Other(format!("read zip entry: {e}")))?;
+        // `enclosed_name` returns `None` for traversal-unsafe paths — skip them.
+        let Some(rel) = entry.enclosed_name() else {
+            continue;
+        };
+        let out = dest.join(rel);
+        if entry.is_dir() {
+            fs::create_dir_all(&out)?;
+        } else {
+            if let Some(parent) = out.parent() {
+                fs::create_dir_all(parent)?;
+            }
+            let mut outfile = File::create(&out)?;
+            io::copy(&mut entry, &mut outfile)?;
+        }
+    }
+    Ok(())
+}
+
+/// The working directory for one artifact of a target: `<base>/work/<target>/<artifact>`.
+pub fn work_dir(base: &Path, target_id: &str, artifact_id: &str) -> PathBuf {
+    base.join("work").join(target_id).join(artifact_id)
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+
+    /// A unique scratch directory, removed on drop.
+    struct Scratch(PathBuf);
+    impl Scratch {
+        fn new() -> Self {
+            let p = std::env::temp_dir().join(format!("cs-ingest-{}", uuid::Uuid::new_v4()));
+            fs::create_dir_all(&p).expect("mkdir scratch");
+            Self(p)
+        }
+        fn path(&self) -> &Path {
+            &self.0
+        }
+    }
+    impl Drop for Scratch {
+        fn drop(&mut self) {
+            let _ = fs::remove_dir_all(&self.0);
+        }
+    }
+
+    #[test]
+    fn hash_is_stable_and_reports_size() {
+        let dir = Scratch::new();
+        let f = dir.path().join("a.bin");
+        fs::write(&f, b"hello world").expect("write");
+        let (sha, size) = hash_file(&f).expect("hash");
+        assert_eq!(size, 11);
+        // Known SHA-256 of "hello world".
+        assert_eq!(
+            sha,
+            "b94d27b9934d3e08a52e52d7da7dabfac484efe37a5380ee9088f7ace2efcde9"
+        );
+    }
+
+    #[test]
+    fn store_is_content_addressed_and_idempotent() {
+        let base = Scratch::new();
+        let src = base.path().join("src.bin");
+        fs::write(&src, b"payload").expect("write");
+        let (sha, _) = hash_file(&src).expect("hash");
+        let p1 = store_file(base.path(), &src, &sha).expect("store");
+        let p2 = store_file(base.path(), &src, &sha).expect("store again");
+        assert_eq!(p1, p2);
+        assert!(p1.ends_with(&sha));
+        assert!(p1.starts_with(base.path().join("blobs").join(&sha[0..2])));
+        assert_eq!(fs::read(&p1).expect("read"), b"payload");
+    }
+
+    #[test]
+    fn extract_zip_writes_entries() {
+        let base = Scratch::new();
+        let archive = base.path().join("a.zip");
+        {
+            let file = File::create(&archive).expect("create");
+            let mut w = zip::ZipWriter::new(file);
+            let opts: zip::write::SimpleFileOptions = Default::default();
+            w.start_file("dir/hello.txt", opts).expect("start");
+            io::Write::write_all(&mut w, b"hi").expect("write");
+            w.finish().expect("finish");
+        }
+        let dest = base.path().join("out");
+        extract_zip(&archive, &dest).expect("extract");
+        assert_eq!(
+            fs::read_to_string(dest.join("dir/hello.txt")).expect("read"),
+            "hi"
+        );
+    }
+}

compliance-agent/src/ingest/mod.rs

@@ -0,0 +1,334 @@
+//! Artifact ingest.
+//!
+//! Normalizes each [`Artifact`] on an [`OnboardedTarget`] into a local working
+//! path plus recorded metadata (content hash, size, discovered facts) that the
+//! classifier and scanners consume. Every blob is SHA-256 hashed — that digest
+//! is also the reconciliation key against sibling products (a firmware sha256
+//! matches tramiton's `Artifact.sha256`).
+
+mod blob;
+
+use std::collections::HashMap;
+use std::path::{Path, PathBuf};
+
+use compliance_core::models::{Artifact, ArtifactKind, DetectedFact, OnboardedTarget};
+use compliance_core::AgentConfig;
+
+use crate::error::AgentError;
+use crate::pipeline::git::{GitOps, RepoCredentials};
+
+/// The paths and identifiers an ingest needs. Decoupled from the full
+/// [`AgentConfig`] so ingest is testable without a complete config.
+pub struct IngestContext<'a> {
+    /// Base directory for content-addressed blobs and working dirs.
+    pub artifact_store_base: &'a Path,
+    /// Base directory for git clones.
+    pub git_clone_base: &'a str,
+    /// Default SSH key path (used when an artifact provides none).
+    pub ssh_key_path: &'a str,
+    /// The id of the target these artifacts belong to (namespaces working dirs).
+    pub target_id: &'a str,
+}
+
+impl<'a> IngestContext<'a> {
+    /// Build an ingest context from the agent config for a given target.
+    pub fn from_config(config: &'a AgentConfig, target_id: &'a str) -> Self {
+        Self {
+            artifact_store_base: Path::new(&config.artifact_store_base_path),
+            git_clone_base: &config.git_clone_base_path,
+            ssh_key_path: &config.ssh_key_path,
+            target_id,
+        }
+    }
+}
+
+/// The result of ingesting one artifact.
+pub struct IngestedArtifact {
+    /// The artifact this corresponds to ([`Artifact::id`]).
+    pub artifact_id: String,
+    /// The artifact kind.
+    pub kind: ArtifactKind,
+    /// Local working path (clone dir, extracted dir, or blob file). `None` for
+    /// artifacts with no on-disk form (live URL, plaintext, container ref).
+    pub working_path: Option<PathBuf>,
+    /// SHA-256 of the content (blobs) or git head SHA (git repos).
+    pub content_hash: Option<String>,
+    /// Stored blob size in bytes, when applicable.
+    pub size_bytes: Option<u64>,
+    /// Facts discovered during ingest.
+    pub facts: Vec<DetectedFact>,
+}
+
+/// All ingested artifacts for a target, keyed by artifact id.
+pub struct IngestSet {
+    /// The ingested artifacts, keyed by [`Artifact::id`].
+    pub by_artifact: HashMap<String, IngestedArtifact>,
+}
+
+impl IngestSet {
+    /// The working paths of every ingested artifact that has one — the input the
+    /// classifier expects.
+    pub fn working_paths(&self) -> HashMap<String, PathBuf> {
+        self.by_artifact
+            .iter()
+            .filter_map(|(id, a)| a.working_path.clone().map(|p| (id.clone(), p)))
+            .collect()
+    }
+
+    /// The ingest result for a specific artifact.
+    pub fn get(&self, artifact_id: &str) -> Option<&IngestedArtifact> {
+        self.by_artifact.get(artifact_id)
+    }
+}
+
+/// Ingest every artifact on a target.
+pub fn ingest_all(
+    target: &OnboardedTarget,
+    ctx: &IngestContext<'_>,
+) -> Result<IngestSet, AgentError> {
+    let mut by_artifact = HashMap::new();
+    for artifact in &target.artifacts {
+        let ingested = ingest_artifact(artifact, ctx)?;
+        by_artifact.insert(artifact.id.clone(), ingested);
+    }
+    Ok(IngestSet { by_artifact })
+}
+
+/// Ingest a single artifact, dispatching on its kind.
+pub fn ingest_artifact(
+    artifact: &Artifact,
+    ctx: &IngestContext<'_>,
+) -> Result<IngestedArtifact, AgentError> {
+    match artifact.kind {
+        ArtifactKind::GitRepo => ingest_git(artifact, ctx),
+        ArtifactKind::SourceArchive | ArtifactKind::MobilePackage | ArtifactKind::PlcProject => {
+            ingest_blob(artifact, ctx, true)
+        }
+        ArtifactKind::FirmwareImage => ingest_blob(artifact, ctx, false),
+        ArtifactKind::ContainerImage => Ok(metadata_only(
+            artifact,
+            DetectedFact::new("container_ref", artifact.source_ref.as_str(), "ingest"),
+        )),
+        ArtifactKind::LiveUrl => Ok(metadata_only(
+            artifact,
+            DetectedFact::new("live_url", artifact.source_ref.as_str(), "ingest"),
+        )),
+        ArtifactKind::PlaintextDescription => Ok(metadata_only(
+            artifact,
+            DetectedFact::new(
+                "description_len",
+                artifact.source_ref.len().to_string(),
+                "ingest",
+            ),
+        )),
+    }
+}
+
+/// Clone (or fetch) a git artifact, recording the head SHA as the content hash.
+fn ingest_git(
+    artifact: &Artifact,
+    ctx: &IngestContext<'_>,
+) -> Result<IngestedArtifact, AgentError> {
+    let creds = credentials_for(artifact, ctx.ssh_key_path);
+    let git_ops = GitOps::new(ctx.git_clone_base, creds);
+    let repo_path = git_ops.clone_or_fetch(&artifact.source_ref, &artifact.id)?;
+    let head = GitOps::get_head_sha(&repo_path).ok();
+    Ok(IngestedArtifact {
+        artifact_id: artifact.id.clone(),
+        kind: artifact.kind,
+        working_path: Some(repo_path),
+        content_hash: head,
+        size_bytes: None,
+        facts: Vec::new(),
+    })
+}
+
+/// Store a blob artifact content-addressed. When `extract` is set and the blob
+/// is a zip container (source archive, APK/AAB/IPA), also unpack it into a
+/// working directory; otherwise the working path is the stored blob.
+fn ingest_blob(
+    artifact: &Artifact,
+    ctx: &IngestContext<'_>,
+    extract: bool,
+) -> Result<IngestedArtifact, AgentError> {
+    let base = ctx.artifact_store_base;
+    let src = local_source(artifact)?;
+    let (sha, size) = blob::hash_file(&src)?;
+    let stored = blob::store_file(base, &src, &sha)?;
+
+    let mut facts = Vec::new();
+    let working_path = if extract {
+        let dest = blob::work_dir(base, ctx.target_id, &artifact.id);
+        match blob::extract_zip(&stored, &dest) {
+            Ok(()) => dest,
+            Err(e) => {
+                // Not a zip (e.g. a tar.gz source archive) — keep the blob and
+                // note it so later stages can decide what to do.
+                facts.push(DetectedFact::new(
+                    "archive_unextracted",
+                    e.to_string(),
+                    "ingest",
+                ));
+                stored.clone()
+            }
+        }
+    } else {
+        stored.clone()
+    };
+
+    Ok(IngestedArtifact {
+        artifact_id: artifact.id.clone(),
+        kind: artifact.kind,
+        working_path: Some(working_path),
+        content_hash: Some(sha),
+        size_bytes: Some(size),
+        facts,
+    })
+}
+
+/// An artifact with no on-disk form: record a single fact, no hash/path.
+fn metadata_only(artifact: &Artifact, fact: DetectedFact) -> IngestedArtifact {
+    IngestedArtifact {
+        artifact_id: artifact.id.clone(),
+        kind: artifact.kind,
+        working_path: None,
+        content_hash: None,
+        size_bytes: None,
+        facts: vec![fact],
+    }
+}
+
+/// The local file backing a blob artifact: its `stored_path` if already
+/// uploaded, else its `source_ref` interpreted as a filesystem path.
+fn local_source(artifact: &Artifact) -> Result<PathBuf, AgentError> {
+    let path = artifact
+        .stored_path
+        .as_deref()
+        .unwrap_or(artifact.source_ref.as_str());
+    let path = PathBuf::from(path);
+    if !path.exists() {
+        return Err(AgentError::Other(format!(
+            "artifact {} source not found at {}",
+            artifact.id,
+            path.display()
+        )));
+    }
+    Ok(path)
+}
+
+/// Build git credentials from an artifact's auth plus a default SSH key path.
+fn credentials_for(artifact: &Artifact, default_ssh_key_path: &str) -> RepoCredentials {
+    let auth = artifact.auth.as_ref();
+    RepoCredentials {
+        ssh_key_path: auth
+            .and_then(|a| a.ssh_key_path.clone())
+            .or_else(|| Some(default_ssh_key_path.to_string())),
+        auth_token: auth.and_then(|a| a.secret.clone()),
+        auth_username: auth.and_then(|a| a.username.clone()),
+    }
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use compliance_core::models::{ArtifactAuth, TargetType};
+
+    /// A unique scratch directory, removed on drop.
+    struct Scratch(PathBuf);
+    impl Scratch {
+        fn new() -> Self {
+            let p = std::env::temp_dir().join(format!("cs-ingest-mod-{}", uuid::Uuid::new_v4()));
+            std::fs::create_dir_all(&p).expect("mkdir scratch");
+            Self(p)
+        }
+    }
+    impl Drop for Scratch {
+        fn drop(&mut self) {
+            let _ = std::fs::remove_dir_all(&self.0);
+        }
+    }
+
+    fn ctx_for<'a>(store: &'a Path, target_id: &'a str) -> IngestContext<'a> {
+        IngestContext {
+            artifact_store_base: store,
+            git_clone_base: "/tmp/cs-ingest-test-repos",
+            ssh_key_path: "/tmp/cs-ingest-test-ssh",
+            target_id,
+        }
+    }
+
+    #[test]
+    fn firmware_blob_is_hashed_and_stored() {
+        let scratch = Scratch::new();
+        let store = scratch.0.join("store");
+        let fw = scratch.0.join("fw.bin");
+        std::fs::write(&fw, b"firmware-bytes").expect("write");
+
+        let ctx = ctx_for(&store, "t1");
+        let artifact = Artifact::firmware_image(fw.to_string_lossy().to_string());
+        let out = ingest_artifact(&artifact, &ctx).expect("ingest");
+
+        assert_eq!(out.kind, ArtifactKind::FirmwareImage);
+        assert_eq!(out.size_bytes, Some(14));
+        let sha = out.content_hash.expect("hash");
+        assert_eq!(sha.len(), 64);
+        // working path is the content-addressed blob
+        let wp = out.working_path.expect("working path");
+        assert!(wp.starts_with(store.join("blobs")));
+    }
+
+    #[test]
+    fn live_url_has_no_blob() {
+        let scratch = Scratch::new();
+        let store = scratch.0.join("store");
+        let ctx = ctx_for(&store, "t1");
+        let artifact = Artifact::live_url("https://example.com");
+        let out = ingest_artifact(&artifact, &ctx).expect("ingest");
+        assert!(out.working_path.is_none());
+        assert!(out.content_hash.is_none());
+        assert!(out.facts.iter().any(|f| f.key == "live_url"));
+    }
+
+    #[test]
+    fn ingest_all_collects_working_paths() {
+        let scratch = Scratch::new();
+        let store = scratch.0.join("store");
+        let fw = scratch.0.join("fw.bin");
+        std::fs::write(&fw, b"abc").expect("write");
+        let ctx = ctx_for(&store, "t1");
+
+        let mut target = OnboardedTarget::new("t".to_string(), TargetType::FirmwareBareMetal);
+        target
+            .artifacts
+            .push(Artifact::firmware_image(fw.to_string_lossy().to_string()));
+        target.artifacts.push(Artifact::live_url("https://x"));
+
+        let set = ingest_all(&target, &ctx).expect("ingest all");
+        assert_eq!(set.by_artifact.len(), 2);
+        // Only the firmware artifact yields a working path.
+        assert_eq!(set.working_paths().len(), 1);
+    }
+
+    #[test]
+    fn credentials_prefer_artifact_auth() {
+        let mut artifact = Artifact::git_repo("https://git/x", "main");
+        artifact.auth = Some(ArtifactAuth {
+            method: "token".to_string(),
+            username: Some("bob".to_string()),
+            secret: Some("pat".to_string()),
+            ..Default::default()
+        });
+        let creds = credentials_for(&artifact, "/default/ssh/key");
+        assert_eq!(creds.auth_token.as_deref(), Some("pat"));
+        assert_eq!(creds.auth_username.as_deref(), Some("bob"));
+    }
+
+    #[test]
+    fn credentials_fall_back_to_default_ssh_key() {
+        let artifact = Artifact::git_repo("git@host:x.git", "main");
+        let creds = credentials_for(&artifact, "/default/ssh/key");
+        assert_eq!(creds.ssh_key_path.as_deref(), Some("/default/ssh/key"));
+        assert!(creds.auth_token.is_none());
+    }
+}

compliance-agent/src/lib.rs

@@ -0,0 +1,19 @@
+// Library entrypoint — re-exports for integration tests and the binary.
+
+pub mod agent;
+pub mod api;
+pub mod classify;
+pub mod config;
+pub mod database;
+pub mod error;
+pub mod ingest;
+pub mod llm;
+pub mod migrate;
+pub mod pentest;
+pub mod pipeline;
+pub mod rag;
+pub mod scheduler;
+pub mod ssh;
+#[allow(dead_code)]
+pub mod trackers;
+pub mod webhooks;

compliance-agent/src/llm/client.rs

@@ -19,12 +19,17 @@ impl LlmClient {
         model: String,
         embed_model: String,
     ) -> Self {
+        let http = reqwest::Client::builder()
+            .timeout(std::time::Duration::from_secs(300))
+            .connect_timeout(std::time::Duration::from_secs(10))
+            .build()
+            .unwrap_or_default();
         Self {
             base_url,
             api_key,
             model,
             embed_model,
-            http: reqwest::Client::new(),
+            http,
         }
     }
 

compliance-agent/src/llm/descriptions.rs

@@ -5,15 +5,20 @@ use compliance_core::models::Finding;
 use crate::error::AgentError;
 use crate::llm::LlmClient;
 
-const DESCRIPTION_SYSTEM_PROMPT: &str = r#"You are a security engineer writing issue descriptions for a bug tracker. Generate a clear, actionable issue body in Markdown format that includes:
+const DESCRIPTION_SYSTEM_PROMPT: &str = r#"You are a security engineer writing a bug tracker issue for a developer to fix. Be direct and actionable — developers skim issue descriptions, so lead with what matters.
 
-1. **Summary**: 1-2 sentence overview
-2. **Evidence**: Code location, snippet, and what was detected
-3. **Impact**: What could happen if not fixed
-4. **Remediation**: Step-by-step fix instructions
-5. **References**: Relevant CWE/CVE links if applicable
+Format in Markdown:
 
-Keep it concise and professional. Use code blocks for code snippets."#;
+1. **What**: 1 sentence — what's wrong and where (file:line)
+2. **Why it matters**: 1-2 sentences — concrete impact if not fixed. Avoid generic "could lead to" phrasing; describe the specific attack or failure scenario.
+3. **Fix**: The specific code change needed. Use a code block with the corrected code if possible. If the fix is configuration-based, show the exact config change.
+4. **References**: CWE/CVE link if applicable (one line, not a section)
+
+Rules:
+- No filler paragraphs or background explanations
+- No restating the finding title in the body
+- Code blocks should show the FIX, not the vulnerable code (the developer can see that in the diff)
+- If the remediation is a one-liner, just say it — don't wrap it in a section header"#;
 
 pub async fn generate_issue_description(
     llm: &Arc<LlmClient>,

compliance-agent/src/llm/fixes.rs

@@ -5,7 +5,24 @@ use compliance_core::models::Finding;
 use crate::error::AgentError;
 use crate::llm::LlmClient;
 
-const FIX_SYSTEM_PROMPT: &str = r#"You are a security engineer. Given a security finding with code context, suggest a concrete code fix. Return ONLY the fixed code snippet that can directly replace the vulnerable code. Include brief inline comments explaining the fix."#;
+const FIX_SYSTEM_PROMPT: &str = r#"You are a security engineer suggesting a code fix. Return ONLY the corrected code that replaces the vulnerable snippet — no explanations, no markdown fences, no before/after comparison.
+
+Rules:
+- The fix must be a drop-in replacement for the vulnerable code
+- Preserve the original code's style, indentation, and naming conventions
+- Add at most one brief inline comment on the changed line explaining the security fix
+- If the fix requires importing a new module, include the import on a separate line prefixed with the language's comment syntax + "Add import: "
+- Do not refactor, rename variables, or "improve" unrelated code
+- If the vulnerability is a false positive and the code is actually safe, return the original code unchanged with a comment explaining why no fix is needed
+
+Language-specific fix guidance:
+- Rust: use `?` for error propagation, prefer `SecretString` for secrets, use parameterized queries with `sqlx`/`diesel`
+- Python: use parameterized queries (never f-strings in SQL), use `secrets` module not `random`, use `subprocess.run([...])` list form, use `markupsafe.escape()` for HTML
+- Go: use `sql.Query` with `$1`/`?` placeholders, use `crypto/rand` not `math/rand`, use `html/template` not `text/template`, return errors don't panic
+- Java/Kotlin: use `PreparedStatement` with `?` params, use `SecureRandom`, use `Jsoup.clean()` for HTML sanitization, use `@Valid` for input validation
+- Ruby: use ActiveRecord parameterized finders, use `SecureRandom`, use `ERB::Util.html_escape`, use `strong_parameters`
+- PHP: use PDO prepared statements with `:param` or `?`, use `random_bytes()`/`random_int()`, use `htmlspecialchars()` with `ENT_QUOTES`, use `password_hash(PASSWORD_BCRYPT)`
+- C/C++: use `snprintf` not `sprintf`, use bounds-checked APIs, free resources in reverse allocation order, use `memset_s` for secret cleanup"#;
 
 pub async fn suggest_fix(llm: &Arc<LlmClient>, finding: &Finding) -> Result<String, AgentError> {
     let user_prompt = format!(

compliance-agent/src/llm/review_prompts.rs

@@ -1,69 +1,138 @@
 // System prompts for multi-pass LLM code review.
 // Each pass focuses on a different aspect to avoid overloading a single prompt.
 
-pub const LOGIC_REVIEW_PROMPT: &str = r#"You are a senior software engineer reviewing code changes. Focus ONLY on logic and correctness issues.
+pub const LOGIC_REVIEW_PROMPT: &str = r#"You are a senior software engineer reviewing a code diff. Report ONLY genuine logic bugs that would cause incorrect behavior at runtime.
 
-Look for:
-- Off-by-one errors, wrong comparisons, missing edge cases
-- Incorrect control flow (unreachable code, missing returns, wrong loop conditions)
-- Race conditions or concurrency bugs
-- Resource leaks (unclosed handles, missing cleanup)
-- Wrong variable used (copy-paste errors)
-- Incorrect error handling (swallowed errors, wrong error type)
+Report:
+- Off-by-one errors, wrong comparisons, missing edge cases that cause wrong results
+- Incorrect control flow that produces wrong output (not style preferences)
+- Actual race conditions with concrete shared-state mutation (not theoretical ones)
+- Resource leaks where cleanup is truly missing (not just "could be improved")
+- Wrong variable used (copy-paste errors) — must be provably wrong, not just suspicious
+- Swallowed errors that silently hide failures in a way that matters
 
-Ignore: style, naming, formatting, documentation, minor improvements.
+Do NOT report:
+- Style, naming, formatting, documentation, or code organization preferences
+- Theoretical issues without a concrete triggering scenario
+- "Potential" problems that require assumptions not supported by the visible code
+- Complexity or function length — that's a separate review pass
 
-For each issue found, respond with a JSON array:
+Language-idiomatic patterns that are NOT bugs (do not flag these):
+- Rust: `||`/`&&` short-circuit evaluation, variable shadowing, `let` rebinding, `clone()`, `impl` blocks, `match` arms with guards, `?` operator chaining, `unsafe` blocks with safety comments
+- Python: duck typing, EAFP pattern (try/except vs check-first), `*args`/`**kwargs`, walrus operator `:=`, truthiness checks on containers, bare `except:` in top-level handlers
+- Go: multiple return values for errors, `if err != nil` patterns, goroutine + channel patterns, blank identifier `_`, named returns, `defer` for cleanup, `init()` functions
+- Java/Kotlin: checked exception patterns, method overloading, `Optional` vs null checks, Kotlin `?.` safe calls, `!!` non-null assertions in tests, `when` exhaustive matching, companion objects, `lateinit`
+- Ruby: monkey patching in libraries, method_missing, blocks/procs/lambdas, `rescue => e` patterns, `send`/`respond_to?` metaprogramming, `nil` checks via `&.` safe navigation
+- PHP: loose comparisons with `==` (only flag if `===` was clearly intended), `@` error suppression in legacy code, `isset()`/`empty()` patterns, magic methods (`__get`, `__call`), array functions as callbacks
+- C/C++: RAII patterns, move semantics, `const_cast`/`static_cast` in appropriate contexts, macro usage for platform compat, pointer arithmetic in low-level code, `goto` for cleanup in C
+
+Severity guide:
+- high: Will cause incorrect behavior in normal usage
+- medium: Will cause incorrect behavior in edge cases
+- low: Minor correctness concern with limited blast radius
+
+Prefer returning [] over reporting low-confidence guesses. A false positive wastes more developer time than a missed low-severity issue.
+
+Respond with a JSON array (no markdown fences):
 [{"title": "...", "description": "...", "severity": "high|medium|low", "file": "...", "line": N, "suggestion": "..."}]
 
 If no issues found, respond with: []"#;
 
-pub const SECURITY_REVIEW_PROMPT: &str = r#"You are a security engineer reviewing code changes. Focus ONLY on security vulnerabilities.
+pub const SECURITY_REVIEW_PROMPT: &str = r#"You are a security engineer reviewing a code diff. Report ONLY exploitable security vulnerabilities with a realistic attack scenario.
 
-Look for:
-- Injection vulnerabilities (SQL, command, XSS, template injection)
-- Authentication/authorization bypasses
-- Sensitive data exposure (logging secrets, hardcoded credentials)
-- Insecure cryptography (weak algorithms, predictable randomness)
-- Path traversal, SSRF, open redirects
-- Unsafe deserialization
-- Missing input validation at trust boundaries
+Report:
+- Injection vulnerabilities (SQL, command, XSS, template) where untrusted input reaches a sink
+- Authentication/authorization bypasses with a concrete exploit path
+- Sensitive data exposure: secrets in code, credentials in logs, PII leaks
+- Insecure cryptography: weak algorithms, predictable randomness, hardcoded keys
+- Path traversal, SSRF, open redirects — only where user input reaches the vulnerable API
+- Unsafe deserialization of untrusted data
+- Missing input validation at EXTERNAL trust boundaries (user input, API responses)
 
-Ignore: code style, performance, general quality.
+Do NOT report:
+- Internal code that only handles trusted/validated data
+- Hash functions used for non-security purposes (dedup fingerprints, cache keys, content addressing)
+- Logging of non-sensitive operational data (finding titles, counts, performance metrics)
+- "Information disclosure" for data that is already public or user-facing
+- Code style, performance, or general quality issues
+- Missing validation on internal function parameters (trust the caller within the same module/crate/package)
+- Theoretical attacks that require preconditions not present in the code
 
-For each issue found, respond with a JSON array:
+Language-specific patterns that are NOT vulnerabilities (do not flag these):
+- Python: `pickle` used on trusted internal data, `eval()`/`exec()` on hardcoded strings, `subprocess` with hardcoded commands, Django `mark_safe()` on static content, `assert` in non-security contexts
+- Go: `crypto/rand` is secure (don't confuse with `math/rand`), `sql.DB` with parameterized queries is safe, `http.ListenAndServe` without TLS in dev/internal, error strings in responses (Go convention)
+- Java/Kotlin: Spring Security annotations are sufficient auth checks, `@Transactional` provides atomicity, JPA parameterized queries are safe, Kotlin `require()`/`check()` are assertion patterns not vulnerabilities
+- Ruby: Rails `params.permit()` is input validation, `render html:` with `html_safe` on generated content, ActiveRecord parameterized finders are safe, Devise/Warden patterns for auth
+- PHP: PDO prepared statements are safe, Laravel Eloquent is parameterized, `htmlspecialchars()` is XSS mitigation, Symfony security voters are auth checks, `password_hash()`/`password_verify()` are correct bcrypt usage
+- C/C++: `strncpy`/`snprintf` are bounds-checked (vs `strcpy`/`sprintf`), smart pointers manage memory, RAII handles cleanup, `static_assert` is compile-time only, OpenSSL with proper context setup
+- Rust: `sha2`/`blake3` for fingerprinting is not "weak crypto", `unsafe` with documented invariants, `secrecy::SecretString` properly handles secrets
+
+Severity guide:
+- critical: Remote code execution, auth bypass, or data breach with no preconditions
+- high: Exploitable vulnerability requiring minimal preconditions
+- medium: Vulnerability requiring specific conditions or limited impact
+
+Prefer returning [] over reporting speculative vulnerabilities. Every false positive erodes trust in the scanner.
+
+Respond with a JSON array (no markdown fences):
 [{"title": "...", "description": "...", "severity": "critical|high|medium", "file": "...", "line": N, "cwe": "CWE-XXX", "suggestion": "..."}]
 
 If no issues found, respond with: []"#;
 
-pub const CONVENTION_REVIEW_PROMPT: &str = r#"You are a code reviewer checking adherence to project conventions. Focus ONLY on patterns that indicate likely bugs or maintenance problems.
+pub const CONVENTION_REVIEW_PROMPT: &str = r#"You are a code reviewer checking for convention violations that indicate likely bugs. Report ONLY deviations from the project's visible patterns that could cause real problems.
 
-Look for:
-- Inconsistent error handling patterns within the same module
-- Public API that doesn't follow the project's established patterns
-- Missing or incorrect type annotations that could cause runtime issues
-- Anti-patterns specific to the language (e.g. unwrap in Rust library code, any in TypeScript)
+Report:
+- Inconsistent error handling within the same module where the inconsistency could hide failures
+- Public API that breaks the module's established contract (not just different style)
+- Anti-patterns that are bugs in this language: e.g. `unwrap()` in Rust library code where the CI enforces `clippy::unwrap_used`, `any` defeating TypeScript's type system
 
-Do NOT report: minor style preferences, documentation gaps, formatting.
-Only report issues with HIGH confidence that they deviate from the visible codebase conventions.
+Do NOT report:
+- Style preferences, formatting, naming conventions, or documentation
+- Code organization suggestions ("this function should be split")
+- Patterns that are valid in the language even if you'd write them differently
+- "Missing type annotations" unless the code literally won't compile or causes a type inference bug
 
-For each issue found, respond with a JSON array:
+Language-specific patterns that are conventional (do not flag these):
+- Rust: variable shadowing, `||`/`&&` short-circuit, `let` rebinding, builder patterns, `clone()`, `From`/`Into` impl chains, `#[allow(...)]` attributes
+- Python: `**kwargs` forwarding, `@property` setters, `__dunder__` methods, list comprehensions with conditions, `if TYPE_CHECKING` imports, `noqa` comments
+- Go: stuttering names (`http.HTTPClient`) discouraged but not a bug, `context.Context` as first param, init() functions, `//nolint` directives, returning concrete types vs interfaces in internal code
+- Java/Kotlin: builder pattern boilerplate, Lombok annotations (`@Data`, `@Builder`), Kotlin data classes, `companion object` factories, `@Suppress` annotations, checked exception wrapping
+- Ruby: `attr_accessor` usage, `Enumerable` mixin patterns, `module_function`, `class << self` syntax, DSL blocks (Rake, RSpec, Sinatra routes)
+- PHP: `__construct` with property promotion, Laravel facades, static factory methods, nullable types with `?`, attribute syntax `#[...]`
+- C/C++: header guards vs `#pragma once`, forward declarations, `const` correctness patterns, template specialization, `auto` type deduction
+
+Severity guide:
+- medium: Convention violation that will likely cause a bug or maintenance problem
+- low: Convention violation that is a minor concern
+
+Return at most 3 findings. Prefer [] over marginal findings.
+
+Respond with a JSON array (no markdown fences):
 [{"title": "...", "description": "...", "severity": "medium|low", "file": "...", "line": N, "suggestion": "..."}]
 
 If no issues found, respond with: []"#;
 
-pub const COMPLEXITY_REVIEW_PROMPT: &str = r#"You are reviewing code changes for excessive complexity that could lead to bugs.
+pub const COMPLEXITY_REVIEW_PROMPT: &str = r#"You are reviewing code changes for complexity that is likely to cause bugs. Report ONLY complexity that makes the code demonstrably harder to reason about.
 
-Look for:
-- Functions over 50 lines that should be decomposed
-- Deeply nested control flow (4+ levels)
-- Complex boolean expressions that are hard to reason about
-- Functions with 5+ parameters
-- Code duplication within the changed files
+Report:
+- Functions over 80 lines with multiple interleaved responsibilities (not just long)
+- Deeply nested control flow (5+ levels) where flattening would prevent bugs
+- Complex boolean expressions that a reader would likely misinterpret
 
-Only report complexity issues that are HIGH risk for future bugs. Ignore acceptable complexity in configuration, CLI argument parsing, or generated code.
+Do NOT report:
+- Functions that are long but linear and easy to follow
+- Acceptable complexity: configuration setup, CLI parsing, test helpers, builder patterns
+- Code that is complex because the problem is complex — only report if restructuring would reduce bug risk
+- "This function does multiple things" unless you can identify a specific bug risk from the coupling
+- Suggestions that would just move complexity elsewhere without reducing it
 
-For each issue found, respond with a JSON array:
+Severity guide:
+- medium: Complexity that has a concrete risk of causing bugs during future changes
+- low: Complexity that makes review harder but is unlikely to cause bugs
+
+Return at most 2 findings. Prefer [] over reporting complexity that is justified.
+
+Respond with a JSON array (no markdown fences):
 [{"title": "...", "description": "...", "severity": "medium|low", "file": "...", "line": N, "suggestion": "..."}]
 
 If no issues found, respond with: []"#;

compliance-agent/src/llm/triage.rs

@@ -8,22 +8,46 @@ use crate::pipeline::orchestrator::GraphContext;
 /// Maximum number of findings to include in a single LLM triage call.
 const TRIAGE_CHUNK_SIZE: usize = 30;
 
-const TRIAGE_SYSTEM_PROMPT: &str = r#"You are a security finding triage expert. Analyze each of the following security findings with its code context and determine the appropriate action.
+const TRIAGE_SYSTEM_PROMPT: &str = r#"You are a pragmatic security triage expert. Your job is to filter out noise and keep only findings that a developer should actually fix. Be aggressive about dismissing false positives — a clean, high-signal list is more valuable than a comprehensive one.
 
 Actions:
-- "confirm": The finding is a true positive at the reported severity. Keep as-is.
-- "downgrade": The finding is real but over-reported. Lower severity recommended.
-- "upgrade": The finding is under-reported. Higher severity recommended.
-- "dismiss": The finding is a false positive. Should be removed.
+- "confirm": True positive with real impact. Keep severity as-is.
+- "downgrade": Real issue but over-reported severity. Lower it.
+- "upgrade": Under-reported — higher severity warranted.
+- "dismiss": False positive, not exploitable, or not actionable. Remove it.
 
-Consider:
-- Is the code in a test, example, or generated file? (lower confidence for test code)
-- Does the surrounding code context confirm or refute the finding?
-- Is the finding actionable by a developer?
-- Would a real attacker be able to exploit this?
+Dismiss when:
+- The scanner flagged a language idiom as a bug (see examples below)
+- The finding is in test/example/generated/vendored code
+- The "vulnerability" requires preconditions that don't exist in the code
+- The finding is about code style, complexity, or theoretical concerns rather than actual bugs
+- A hash function is used for non-security purposes (dedup, caching, content addressing)
+- Internal logging of non-sensitive operational data is flagged as "information disclosure"
+- The finding duplicates another finding already in the list
+- Framework-provided security is already in place (e.g. ORM parameterized queries, CSRF middleware, auth decorators)
 
-Respond with a JSON array, one entry per finding in the same order they were presented:
-[{"id": "<fingerprint>", "action": "confirm|downgrade|upgrade|dismiss", "confidence": 0-10, "rationale": "brief explanation", "remediation": "optional fix suggestion"}, ...]"#;
+Common false positive patterns by language (dismiss these):
+- Rust: short-circuit `||`/`&&`, variable shadowing, `clone()`, `unsafe` with safety docs, `sha2` for fingerprinting
+- Python: EAFP try/except, `subprocess` with hardcoded args, `pickle` on trusted data, Django `mark_safe` on static content
+- Go: `if err != nil` is not "swallowed error", `crypto/rand` is secure, returning errors is not "information disclosure"
+- Java/Kotlin: Spring Security annotations are valid auth, JPA parameterized queries are safe, Kotlin `!!` in tests is fine
+- Ruby: Rails `params.permit` is validation, ActiveRecord finders are parameterized, `html_safe` on generated content
+- PHP: PDO prepared statements are safe, Laravel Eloquent is parameterized, `htmlspecialchars` is XSS mitigation
+- C/C++: `strncpy`/`snprintf` are bounds-checked, smart pointers manage memory, RAII handles cleanup
+
+Confirm only when:
+- You can describe a concrete scenario where the bug manifests or the vulnerability is exploitable
+- The fix is actionable (developer can change specific code to resolve it)
+- The finding is in production code that handles external input or sensitive data
+
+Confidence scoring (0-10):
+- 8-10: Certain true positive with clear exploit/bug scenario
+- 5-7: Likely true positive, some assumptions required
+- 3-4: Uncertain, needs manual review
+- 0-2: Almost certainly a false positive
+
+Respond with a JSON array, one entry per finding in the same order presented (no markdown fences):
+[{"id": "<fingerprint>", "action": "confirm|downgrade|upgrade|dismiss", "confidence": 0-10, "rationale": "1-2 sentences", "remediation": "optional fix"}, ...]"#;
 
 pub async fn triage_findings(
     llm: &Arc<LlmClient>,

compliance-agent/src/main.rs

@@ -1,23 +1,56 @@
-mod agent;
-mod api;
-pub(crate) mod config;
-mod database;
-mod error;
-mod llm;
-mod pentest;
-mod pipeline;
-mod rag;
-mod scheduler;
-mod ssh;
-#[allow(dead_code)]
-mod trackers;
-mod webhooks;
+use compliance_agent::{agent, api, config, database, migrate, scheduler, ssh, webhooks};
+
+/// Run the `migrate onboarding` subcommand and exit. Backfills (or reverts) the
+/// unified `onboarded_targets` collection per tenant.
+///
+/// Usage: `compliance-agent migrate onboarding [--all | --tenant <id>] [--dry-run] [--revert]`
+async fn run_migration(
+    args: &[String],
+    pool: &database::DatabasePool,
+) -> Result<(), compliance_agent::error::AgentError> {
+    if args.get(2).map(String::as_str) != Some("onboarding") {
+        eprintln!(
+            "usage: compliance-agent migrate onboarding [--all | --tenant <id>] [--dry-run] [--revert]"
+        );
+        std::process::exit(2);
+    }
+    let has = |flag: &str| args.iter().any(|a| a == flag);
+    let dry_run = has("--dry-run");
+    let revert = has("--revert");
+    let tenant = args
+        .iter()
+        .position(|a| a == "--tenant")
+        .and_then(|i| args.get(i + 1))
+        .cloned();
+
+    let tenants: Vec<String> = if has("--all") {
+        pool.list_tenant_ids().await?
+    } else if let Some(t) = tenant {
+        vec![t]
+    } else {
+        eprintln!("specify --all or --tenant <id>");
+        std::process::exit(2);
+    };
+
+    for tenant_id in tenants {
+        let db = pool.for_tenant_id(&tenant_id).await?;
+        if revert {
+            migrate::onboarding::revert(&db).await?;
+            println!("[{tenant_id}] reverted onboarding backfill");
+        } else {
+            let report = migrate::onboarding::backfill_onboarded_targets(&db, dry_run).await?;
+            let prefix = if dry_run { "(dry-run) " } else { "" };
+            println!("[{tenant_id}] {prefix}{report:?}");
+        }
+    }
+    Ok(())
+}
 
 #[tokio::main]
 async fn main() -> Result<(), Box<dyn std::error::Error>> {
     match dotenvy::dotenv() {
         Ok(path) => eprintln!("[dotenv] Loaded from: {}", path.display()),
-        Err(e) => eprintln!("[dotenv] FAILED: {e}"),
+        Err(_) => eprintln!("[dotenv] No .env file found, using environment variables"),
     }
 
     let _telemetry_guard = compliance_core::telemetry::init_telemetry("compliance-agent");
@@ -38,10 +71,20 @@ async fn main() -> Result<(), Box<dyn std::error::Error>> {
     }
 
     tracing::info!("Connecting to MongoDB...");
-    let db = database::Database::connect(&config.mongodb_uri, &config.mongodb_database).await?;
-    db.ensure_indexes().await?;
+    // Per-tenant pool only — the agent has no shared "default" database
+    // after M7.2-D. `mongodb_database` is now the db-name prefix used
+    // for tenant databases (`<prefix>_<tenant_id>`).
+    let db_pool =
+        database::DatabasePool::connect(&config.mongodb_uri, &config.mongodb_database).await?;
 
-    let agent = agent::ComplianceAgent::new(config.clone(), db.clone());
+    // One-shot subcommands run and exit without starting the servers.
+    let args: Vec<String> = std::env::args().collect();
+    if args.get(1).map(String::as_str) == Some("migrate") {
+        run_migration(&args, &db_pool).await?;
+        return Ok(());
+    }
+
+    let agent = agent::ComplianceAgent::new(config.clone(), db_pool);
 
     tracing::info!("Starting scheduler...");
     let scheduler_agent = agent.clone();

compliance-agent/src/migrate/mod.rs

@@ -0,0 +1,8 @@
+//! One-time data migrations.
+//!
+//! Currently just the onboarding backfill ([`onboarding`]), which folds the
+//! legacy `repositories` and `dast_targets` collections into the unified
+//! `onboarded_targets` collection, preserving `_id` so every downstream record
+//! keyed by `repo_id` / `target_id` keeps resolving.
+
+pub mod onboarding;

compliance-agent/src/migrate/onboarding.rs

@@ -0,0 +1,406 @@
+//! Backfill: legacy `repositories` + `dast_targets` → `onboarded_targets`.
+//!
+//! The transforms here are **id-preserving**: an [`OnboardedTarget`] keeps the
+//! same `_id` as the `TrackedRepository` / `DastTarget` it came from, so every
+//! downstream collection keyed by that hex id (findings, sbom, scan_runs,
+//! graph, dast_*, pentest_*) keeps resolving with zero row rewrites, and
+//! existing webhook URLs keep working. The mapping functions are pure and unit
+//! tested; the DB orchestration (idempotent per-tenant backfill + revert) is a
+//! thin driver over them.
+
+use compliance_core::models::{
+    Artifact, ArtifactKind, DastTarget, DastTargetType, GitArtifactConfig, IssueTrackerConfig,
+    OnboardedTarget, TargetType, TrackedRepository, WebArtifactConfig,
+};
+use futures_util::TryStreamExt;
+use mongodb::bson::{doc, Document};
+
+use crate::database::Database;
+use crate::error::AgentError;
+
+/// Marker id in `schema_migrations` recording that the backfill has run.
+const MIGRATION_MARKER: &str = "onboarding_backfill_v1";
+
+/// Summary of a backfill run.
+#[derive(Debug, Clone, Default, PartialEq, Eq)]
+pub struct MigrationReport {
+    /// Repositories turned into onboarded targets.
+    pub repos_migrated: u64,
+    /// DAST targets folded into an existing (repo-linked) target as a LiveUrl.
+    pub dast_targets_folded: u64,
+    /// DAST targets with no repo link, migrated as standalone targets.
+    pub dast_targets_standalone: u64,
+    /// Records skipped because a target with that `_id` already existed.
+    pub skipped_existing: u64,
+}
+
+/// Map a legacy `DastTargetType` to a unified [`TargetType`]. REST/GraphQL APIs
+/// are backend services; a browser app is a web app.
+fn target_type_for_dast(kind: &DastTargetType) -> TargetType {
+    match kind {
+        DastTargetType::WebApp => TargetType::WebApp,
+        DastTargetType::RestApi | DastTargetType::GraphQl => TargetType::BackendService,
+    }
+}
+
+/// Build the LiveUrl artifact for a DAST target (its base URL + crawl config +
+/// auth). Shared by fold-in and standalone migration.
+pub fn dast_to_artifact(dast: &DastTarget) -> Artifact {
+    let mut artifact = Artifact::live_url(dast.base_url.clone());
+    artifact.web = Some(WebArtifactConfig {
+        target_kind: dast.target_type.clone(),
+        excluded_paths: dast.excluded_paths.clone(),
+        max_crawl_depth: dast.max_crawl_depth,
+        rate_limit: dast.rate_limit,
+        allow_destructive: dast.allow_destructive,
+    });
+    artifact.auth = dast.auth_config.clone().map(Into::into);
+    artifact
+}
+
+/// Map a `TrackedRepository` to an onboarded target, preserving `_id`. The git
+/// remote becomes a `GitRepo` artifact carrying the repo's branch, watermark,
+/// and auth; tracker config folds into `scan_config`.
+///
+/// `target_type` is a safe default (`BackendService`) — the classifier can
+/// refine it later; `classification` is left `None` (unconfirmed).
+pub fn repo_to_target(repo: &TrackedRepository) -> OnboardedTarget {
+    let mut target = OnboardedTarget::new(repo.name.clone(), TargetType::BackendService);
+    target.id = repo.id;
+
+    let mut artifact = Artifact::git_repo(repo.git_url.clone(), repo.default_branch.clone());
+    artifact.git = Some(GitArtifactConfig {
+        default_branch: repo.default_branch.clone(),
+        last_scanned_commit: repo.last_scanned_commit.clone(),
+        local_path: repo.local_path.clone(),
+    });
+    if repo.auth_token.is_some() || repo.auth_username.is_some() {
+        artifact.auth = Some(compliance_core::models::ArtifactAuth {
+            method: "token".to_string(),
+            username: repo.auth_username.clone(),
+            secret: repo.auth_token.clone(),
+            ..Default::default()
+        });
+    }
+    target.artifacts.push(artifact);
+
+    if repo.tracker_type.is_some() {
+        target.scan_config.issue_tracker = Some(IssueTrackerConfig {
+            tracker_type: repo.tracker_type.clone(),
+            owner: repo.tracker_owner.clone(),
+            repo: repo.tracker_repo.clone(),
+            token: repo.tracker_token.clone(),
+        });
+    }
+
+    target.scan_schedule = repo.scan_schedule.clone();
+    target.webhook_enabled = repo.webhook_enabled;
+    target.webhook_secret = repo.webhook_secret.clone();
+    target.findings_count = repo.findings_count;
+    target.created_at = repo.created_at;
+    target.updated_at = repo.updated_at;
+    target
+}
+
+/// Append a DAST target's LiveUrl artifact onto an existing (repo-derived)
+/// target. If the repo default was `BackendService` but the DAST target is a
+/// browser web app, promote the type to `WebApp`.
+pub fn fold_dast_into_target(target: &mut OnboardedTarget, dast: &DastTarget) {
+    if matches!(dast.target_type, DastTargetType::WebApp)
+        && target.target_type == TargetType::BackendService
+    {
+        target.target_type = TargetType::WebApp;
+    }
+    if !target.has(ArtifactKind::LiveUrl) {
+        target.artifacts.push(dast_to_artifact(dast));
+    }
+}
+
+/// Map a repo-less DAST target to a standalone onboarded target, preserving `_id`.
+pub fn dast_to_standalone_target(dast: &DastTarget) -> OnboardedTarget {
+    let mut target =
+        OnboardedTarget::new(dast.name.clone(), target_type_for_dast(&dast.target_type));
+    target.id = dast.id;
+    target.artifacts.push(dast_to_artifact(dast));
+    target.created_at = dast.created_at;
+    target.updated_at = dast.updated_at;
+    target
+}
+
+/// Whether the onboarding backfill has already been applied to this database.
+pub async fn already_applied(db: &Database) -> Result<bool, AgentError> {
+    let found = db
+        .collection_named::<Document>("schema_migrations")
+        .find_one(doc! { "_id": MIGRATION_MARKER })
+        .await?;
+    Ok(found.is_some())
+}
+
+/// Backfill `onboarded_targets` from `repositories` + `dast_targets` for one
+/// tenant database.
+///
+/// Id-preserving and **idempotent**: targets that already exist (by `_id`) are
+/// skipped, so re-running is safe. With `dry_run`, computes the report without
+/// writing. The legacy collections are never deleted; the only mutation outside
+/// `onboarded_targets` is the history relink of folded DAST targets, which is
+/// logged so [`revert`] can undo it.
+pub async fn backfill_onboarded_targets(
+    db: &Database,
+    dry_run: bool,
+) -> Result<MigrationReport, AgentError> {
+    let mut report = MigrationReport::default();
+
+    // 1. repositories -> onboarded_targets (preserve _id, skip existing).
+    let mut repos = db.repositories().find(doc! {}).await?;
+    while let Some(repo) = repos.try_next().await? {
+        let Some(id) = repo.id else { continue };
+        if db
+            .onboarded_targets()
+            .find_one(doc! { "_id": id })
+            .await?
+            .is_some()
+        {
+            report.skipped_existing += 1;
+            continue;
+        }
+        if !dry_run {
+            db.onboarded_targets()
+                .insert_one(repo_to_target(&repo))
+                .await?;
+        }
+        report.repos_migrated += 1;
+    }
+
+    // 2. dast_targets -> fold into the linked repo target, or migrate standalone.
+    let mut dasts = db.dast_targets().find(doc! {}).await?;
+    while let Some(dast) = dasts.try_next().await? {
+        let Some(dast_id) = dast.id else { continue };
+        let repo_oid = dast
+            .repo_id
+            .as_deref()
+            .and_then(|r| mongodb::bson::oid::ObjectId::parse_str(r).ok());
+        let linked = match repo_oid {
+            Some(oid) => db.onboarded_targets().find_one(doc! { "_id": oid }).await?,
+            None => None,
+        };
+
+        match (linked, repo_oid) {
+            // Fold into an existing repo-derived target.
+            (Some(mut target), Some(oid)) => {
+                if target.has(ArtifactKind::LiveUrl) {
+                    report.skipped_existing += 1; // already folded on a prior run
+                    continue;
+                }
+                fold_dast_into_target(&mut target, &dast);
+                if !dry_run {
+                    db.onboarded_targets()
+                        .replace_one(doc! { "_id": oid }, &target)
+                        .await?;
+                    relink_history(db, &dast_id.to_hex(), &oid.to_hex()).await?;
+                }
+                report.dast_targets_folded += 1;
+            }
+            // No linked repo target: migrate as a standalone target (keeps _id).
+            _ => {
+                if db
+                    .onboarded_targets()
+                    .find_one(doc! { "_id": dast_id })
+                    .await?
+                    .is_some()
+                {
+                    report.skipped_existing += 1;
+                    continue;
+                }
+                if !dry_run {
+                    db.onboarded_targets()
+                        .insert_one(dast_to_standalone_target(&dast))
+                        .await?;
+                }
+                report.dast_targets_standalone += 1;
+            }
+        }
+    }
+
+    if !dry_run {
+        db.collection_named::<Document>("schema_migrations")
+            .update_one(
+                doc! { "_id": MIGRATION_MARKER },
+                doc! { "$set": { "applied_at": mongodb::bson::DateTime::now() } },
+            )
+            .upsert(true)
+            .await?;
+    }
+    Ok(report)
+}
+
+/// Relink DAST scan runs and pentest sessions from the old DAST target id to the
+/// unified target id, logging each move so [`revert`] can undo it.
+///
+/// Note: if multiple DAST targets fold into the same repo target, revert
+/// restores only the last-logged mapping — a rare edge. The source collections
+/// (`repositories`, `dast_targets`) are never deleted, so no data is lost.
+async fn relink_history(db: &Database, old_id: &str, new_id: &str) -> Result<(), AgentError> {
+    db.dast_scan_runs()
+        .update_many(
+            doc! { "target_id": old_id },
+            doc! { "$set": { "target_id": new_id } },
+        )
+        .await?;
+    db.pentest_sessions()
+        .update_many(
+            doc! { "target_id": old_id },
+            doc! { "$set": { "target_id": new_id } },
+        )
+        .await?;
+    db.collection_named::<Document>("onboarding_migration_log")
+        .insert_one(doc! { "old_target_id": old_id, "new_target_id": new_id })
+        .await?;
+    Ok(())
+}
+
+/// Undo the backfill: replay the relink log in reverse, drop `onboarded_targets`
+/// and the log, and clear the marker. The legacy collections are untouched, so
+/// this restores the pre-migration state.
+pub async fn revert(db: &Database) -> Result<(), AgentError> {
+    let log = db.collection_named::<Document>("onboarding_migration_log");
+    let mut cursor = log.find(doc! {}).await?;
+    while let Some(entry) = cursor.try_next().await? {
+        if let (Ok(old), Ok(new)) = (
+            entry.get_str("old_target_id"),
+            entry.get_str("new_target_id"),
+        ) {
+            db.dast_scan_runs()
+                .update_many(
+                    doc! { "target_id": new },
+                    doc! { "$set": { "target_id": old } },
+                )
+                .await?;
+            db.pentest_sessions()
+                .update_many(
+                    doc! { "target_id": new },
+                    doc! { "$set": { "target_id": old } },
+                )
+                .await?;
+        }
+    }
+    db.onboarded_targets().drop().await?;
+    log.drop().await?;
+    db.collection_named::<Document>("schema_migrations")
+        .delete_one(doc! { "_id": MIGRATION_MARKER })
+        .await?;
+    Ok(())
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use compliance_core::models::{DastAuthConfig, TrackerType};
+
+    fn repo() -> TrackedRepository {
+        let mut r = TrackedRepository::new("acme".to_string(), "https://git/acme.git".to_string());
+        r.id = Some(mongodb::bson::oid::ObjectId::new());
+        r.default_branch = "develop".to_string();
+        r.last_scanned_commit = Some("abc123".to_string());
+        r.auth_token = Some("pat".to_string());
+        r.auth_username = Some("bob".to_string());
+        r.tracker_type = Some(TrackerType::Gitea);
+        r.tracker_owner = Some("acme".to_string());
+        r.findings_count = 7;
+        r
+    }
+
+    fn dast(repo_id: Option<String>, kind: DastTargetType) -> DastTarget {
+        let mut d = DastTarget::new(
+            "acme-web".to_string(),
+            "https://acme.example.com".to_string(),
+            kind,
+        );
+        d.id = Some(mongodb::bson::oid::ObjectId::new());
+        d.repo_id = repo_id;
+        d.max_crawl_depth = 5;
+        d.auth_config = Some(DastAuthConfig {
+            method: "bearer".to_string(),
+            login_url: None,
+            username: None,
+            password: None,
+            token: Some("tok".to_string()),
+            headers: None,
+        });
+        d
+    }
+
+    #[test]
+    fn repo_maps_preserving_id_and_git_artifact() {
+        let r = repo();
+        let t = repo_to_target(&r);
+        assert_eq!(t.id, r.id); // id preserved
+        assert_eq!(t.findings_count, 7);
+        assert_eq!(t.scan_schedule, r.scan_schedule);
+        let git = t.code_artifact().expect("git artifact");
+        assert_eq!(git.kind, ArtifactKind::GitRepo);
+        assert_eq!(git.source_ref, "https://git/acme.git");
+        let gc = git.git.as_ref().expect("git config");
+        assert_eq!(gc.default_branch, "develop");
+        assert_eq!(gc.last_scanned_commit.as_deref(), Some("abc123"));
+        let auth = git.auth.as_ref().expect("auth");
+        assert_eq!(auth.secret.as_deref(), Some("pat"));
+        assert_eq!(auth.username.as_deref(), Some("bob"));
+        assert_eq!(
+            t.scan_config
+                .issue_tracker
+                .as_ref()
+                .and_then(|it| it.tracker_type.clone()),
+            Some(TrackerType::Gitea)
+        );
+    }
+
+    #[test]
+    fn standalone_dast_maps_preserving_id_and_live_url() {
+        let d = dast(None, DastTargetType::WebApp);
+        let t = dast_to_standalone_target(&d);
+        assert_eq!(t.id, d.id);
+        assert_eq!(t.target_type, TargetType::WebApp);
+        let url = t.live_url().expect("live url");
+        assert_eq!(url.source_ref, "https://acme.example.com");
+        let web = url.web.as_ref().expect("web config");
+        assert_eq!(web.max_crawl_depth, 5);
+        assert_eq!(
+            url.auth.as_ref().and_then(|a| a.secret.clone()),
+            Some("tok".to_string())
+        );
+    }
+
+    #[test]
+    fn rest_api_dast_maps_to_backend_service() {
+        let d = dast(None, DastTargetType::RestApi);
+        assert_eq!(
+            dast_to_standalone_target(&d).target_type,
+            TargetType::BackendService
+        );
+    }
+
+    #[test]
+    fn fold_adds_live_url_and_promotes_webapp() {
+        let mut t = repo_to_target(&repo());
+        assert_eq!(t.target_type, TargetType::BackendService);
+        fold_dast_into_target(&mut t, &dast(Some("x".to_string()), DastTargetType::WebApp));
+        assert_eq!(t.target_type, TargetType::WebApp); // promoted
+        assert!(t.has(ArtifactKind::LiveUrl));
+        assert!(t.has(ArtifactKind::GitRepo));
+    }
+
+    #[test]
+    fn fold_is_idempotent_on_live_url() {
+        let mut t = repo_to_target(&repo());
+        let d = dast(Some("x".to_string()), DastTargetType::WebApp);
+        fold_dast_into_target(&mut t, &d);
+        fold_dast_into_target(&mut t, &d);
+        let live_urls = t
+            .artifacts
+            .iter()
+            .filter(|a| a.kind == ArtifactKind::LiveUrl)
+            .count();
+        assert_eq!(live_urls, 1);
+    }
+}

compliance-agent/src/pentest/cleanup.rs

@@ -328,6 +328,7 @@ mod tests {
             scan_schedule: String::new(),
             cve_monitor_schedule: String::new(),
             git_clone_base_path: String::new(),
+            artifact_store_base_path: String::new(),
             ssh_key_path: String::new(),
             keycloak_url: None,
             keycloak_realm: None,
@@ -336,8 +337,12 @@ mod tests {
             pentest_verification_email: None,
             pentest_imap_host: None,
             pentest_imap_port: None,
+            pentest_imap_tls: true,
             pentest_imap_username: None,
             pentest_imap_password: None,
+            admin_api_token: None,
+            tenant_registry_url: None,
+            unified_pipeline: false,
         }
     }
 

compliance-agent/src/pentest/orchestrator.rs

@@ -321,9 +321,38 @@ impl PentestOrchestrator {
                                     total_findings += findings_count;
 
                                     let mut finding_ids: Vec<String> = Vec::new();
-                                    for mut finding in result.findings {
+                                    // Dedup findings within this tool result before inserting
+                                    let deduped_findings =
+                                        crate::pipeline::dedup::dedup_dast_findings(
+                                            result.findings,
+                                        );
+                                    for mut finding in deduped_findings {
                                         finding.scan_run_id = session_id.clone();
                                         finding.session_id = Some(session_id.clone());
+
+                                        // Check for existing duplicate in this session
+                                        let fp = crate::pipeline::dedup::compute_dast_fingerprint(
+                                            &finding,
+                                        );
+                                        let existing = self
+                                            .db
+                                            .dast_findings()
+                                            .find_one(doc! {
+                                                "session_id": &session_id,
+                                                "title": &finding.title,
+                                                "endpoint": &finding.endpoint,
+                                                "method": &finding.method,
+                                            })
+                                            .await;
+                                        if matches!(existing, Ok(Some(_))) {
+                                            tracing::debug!(
+                                                "Skipping duplicate DAST finding: {} (fp={:.12})",
+                                                finding.title,
+                                                fp,
+                                            );
+                                            continue;
+                                        }
+
                                         let insert_result =
                                             self.db.dast_findings().insert_one(&finding).await;
                                         if let Ok(res) = &insert_result {

compliance-agent/src/pentest/prompt_builder.rs

@@ -314,6 +314,21 @@ impl PentestOrchestrator {
 - For SPA apps: a 200 HTTP status does NOT mean the page is accessible — check the actual
   page content with the browser tool to verify if it shows real data or a login redirect.
 
+## Finding Quality Rules
+- **Do not report the same issue twice.** If multiple tools detect the same missing header or
+  vulnerability on the same endpoint, report it ONCE with the most specific tool's output.
+  For example, if the recon tool and the header scanner both find missing HSTS, report it only
+  from the header scanner (more specific).
+- **Group related findings.** Missing security headers on the same endpoint are ONE finding
+  ("Missing security headers") listing all missing headers, not separate findings per header.
+- **Severity must match real impact:**
+  - critical/high: Exploitable vulnerability (you can demonstrate the exploit)
+  - medium: Real misconfiguration with security implications but not directly exploitable
+  - low: Best-practice recommendation, defense-in-depth, or informational
+- **Missing headers are medium at most** unless you can demonstrate a concrete exploit enabled
+  by the missing header (e.g., missing CSP + confirmed XSS = high for CSP finding).
+- Console.log in third-party/vendored JS (node_modules, minified libraries) is informational only.
+
 ## Important
 - This is an authorized penetration test. All testing is permitted within the target scope.
 - Respect the rate limit of {rate_limit} requests per second.

compliance-agent/src/pipeline/code_review.rs

@@ -66,8 +66,10 @@ impl CodeReviewScanner {
             }
         }
 
+        let deduped = dedup_cross_pass(all_findings);
+
         ScanOutput {
-            findings: all_findings,
+            findings: deduped,
             sbom_entries: Vec::new(),
         }
     }
@@ -184,3 +186,51 @@ struct ReviewIssue {
     #[serde(default)]
     suggestion: Option<String>,
 }
+
+/// Deduplicate findings across review passes.
+///
+/// Multiple passes often flag the same issue (e.g. SQL injection reported by
+/// logic, security, and convention passes). We group by file + nearby line +
+/// normalized title keywords and keep the highest-severity finding.
+fn dedup_cross_pass(findings: Vec<Finding>) -> Vec<Finding> {
+    use std::collections::HashMap;
+
+    // Build a dedup key: (file, line bucket, normalized title words)
+    fn dedup_key(f: &Finding) -> String {
+        let file = f.file_path.as_deref().unwrap_or("");
+        // Group lines within 3 of each other
+        let line_bucket = f.line_number.unwrap_or(0) / 4;
+        // Normalize: lowercase, keep only alphanumeric, sort words for order-independence
+        let title_lower = f.title.to_lowercase();
+        let mut words: Vec<&str> = title_lower
+            .split(|c: char| !c.is_alphanumeric())
+            .filter(|w| w.len() > 2)
+            .collect();
+        words.sort();
+        format!("{file}:{line_bucket}:{}", words.join(","))
+    }
+
+    let mut groups: HashMap<String, Finding> = HashMap::new();
+
+    for finding in findings {
+        let key = dedup_key(&finding);
+        groups
+            .entry(key)
+            .and_modify(|existing| {
+                // Keep the higher severity; on tie, keep the one with more detail
+                if finding.severity > existing.severity
+                    || (finding.severity == existing.severity
+                        && finding.description.len() > existing.description.len())
+                {
+                    *existing = finding.clone();
+                }
+                // Merge CWE if the existing one is missing it
+                if existing.cwe.is_none() {
+                    existing.cwe = finding.cwe.clone();
+                }
+            })
+            .or_insert(finding);
+    }
+
+    groups.into_values().collect()
+}

compliance-agent/src/pipeline/dedup.rs

@@ -1,5 +1,7 @@
 use sha2::{Digest, Sha256};
 
+use compliance_core::models::dast::DastFinding;
+
 pub fn compute_fingerprint(parts: &[&str]) -> String {
     let mut hasher = Sha256::new();
     for part in parts {
@@ -9,9 +11,209 @@ pub fn compute_fingerprint(parts: &[&str]) -> String {
     hex::encode(hasher.finalize())
 }
 
+/// Compute a dedup fingerprint for a DAST finding.
+///
+/// The key is derived from the *canonicalized* title (lowercased, domain names
+/// stripped, known synonyms resolved), endpoint, and HTTP method.  This lets us
+/// detect both exact duplicates (same tool reporting twice across passes) and
+/// semantic duplicates (e.g., `security_header_missing` "Missing HSTS header"
+/// vs `tls_misconfiguration` "Missing strict-transport-security header").
+pub fn compute_dast_fingerprint(f: &DastFinding) -> String {
+    let canon = canonicalize_dast_title(&f.title);
+    let endpoint = f.endpoint.to_lowercase().trim_end_matches('/').to_string();
+    let method = f.method.to_uppercase();
+    let param = f.parameter.as_deref().unwrap_or("");
+    compute_fingerprint(&[&canon, &endpoint, &method, param])
+}
+
+/// Canonicalize a DAST finding title for dedup purposes.
+///
+/// 1. Lowercase
+/// 2. Strip domain names / URLs (e.g. "for comp-dev.meghsakha.com")
+/// 3. Resolve known header synonyms (hsts ↔ strict-transport-security, etc.)
+/// 4. Strip extra whitespace
+fn canonicalize_dast_title(title: &str) -> String {
+    let mut s = title.to_lowercase();
+
+    // Strip "for <domain>" or "on <domain>" suffixes
+    // Pattern: "for <word.word...>" or "on <method> <url>"
+    if let Some(idx) = s.find(" for ") {
+        // Check if what follows looks like a domain or URL
+        let rest = &s[idx + 5..];
+        if rest.contains('.') || rest.starts_with("http") {
+            s.truncate(idx);
+        }
+    }
+    if let Some(idx) = s.find(" on ") {
+        let rest = &s[idx + 4..];
+        if rest.contains("http") || rest.contains('/') {
+            s.truncate(idx);
+        }
+    }
+
+    // Resolve known header synonyms
+    let synonyms: &[(&str, &str)] = &[
+        ("hsts", "strict-transport-security"),
+        ("csp", "content-security-policy"),
+        ("cors", "cross-origin-resource-sharing"),
+        ("xfo", "x-frame-options"),
+    ];
+    for &(short, canonical) in synonyms {
+        // Only replace whole words — check boundaries
+        if let Some(pos) = s.find(short) {
+            let before_ok = pos == 0 || !s.as_bytes()[pos - 1].is_ascii_alphanumeric();
+            let after_ok = pos + short.len() >= s.len()
+                || !s.as_bytes()[pos + short.len()].is_ascii_alphanumeric();
+            if before_ok && after_ok {
+                s = format!("{}{}{}", &s[..pos], canonical, &s[pos + short.len()..]);
+            }
+        }
+    }
+
+    // Collapse whitespace
+    s.split_whitespace().collect::<Vec<_>>().join(" ")
+}
+
+/// Deduplicate a list of DAST findings, merging evidence from duplicates.
+///
+/// Two-phase approach:
+/// 1. **Exact dedup** — group by canonicalized `(title, endpoint, method, parameter)`.
+///    Merge evidence arrays, keep the highest severity, preserve exploitable flag.
+/// 2. **CWE-based dedup** — within the same `(cwe, endpoint, method)` group, merge
+///    findings whose canonicalized titles resolve to the same subject (e.g., HSTS
+///    reported as both `security_header_missing` and `tls_misconfiguration`).
+pub fn dedup_dast_findings(findings: Vec<DastFinding>) -> Vec<DastFinding> {
+    use std::collections::HashMap;
+
+    if findings.len() <= 1 {
+        return findings;
+    }
+
+    // Phase 1: exact fingerprint dedup
+    let mut seen: HashMap<String, usize> = HashMap::new();
+    let mut deduped: Vec<DastFinding> = Vec::new();
+
+    for finding in findings {
+        let fp = compute_dast_fingerprint(&finding);
+
+        if let Some(&idx) = seen.get(&fp) {
+            // Merge into existing
+            merge_dast_finding(&mut deduped[idx], &finding);
+        } else {
+            seen.insert(fp, deduped.len());
+            deduped.push(finding);
+        }
+    }
+
+    let before = deduped.len();
+
+    // Phase 2: CWE-based related dedup
+    // Group by (cwe, endpoint_normalized, method) — only when CWE is present
+    let mut cwe_groups: HashMap<String, Vec<usize>> = HashMap::new();
+    for (i, f) in deduped.iter().enumerate() {
+        if let Some(ref cwe) = f.cwe {
+            let key = format!(
+                "{}|{}|{}",
+                cwe,
+                f.endpoint.to_lowercase().trim_end_matches('/'),
+                f.method.to_uppercase(),
+            );
+            cwe_groups.entry(key).or_default().push(i);
+        }
+    }
+
+    // For each CWE group with multiple findings, keep the one with highest severity
+    // and most evidence, merge the rest into it
+    let mut merge_map: HashMap<usize, Vec<usize>> = HashMap::new();
+    let mut remove_indices: Vec<usize> = Vec::new();
+
+    for indices in cwe_groups.values() {
+        if indices.len() <= 1 {
+            continue;
+        }
+        // Find the "primary" finding: highest severity, then most evidence, then longest description
+        let Some(&primary_idx) = indices.iter().max_by(|&&a, &&b| {
+            deduped[a]
+                .severity
+                .cmp(&deduped[b].severity)
+                .then_with(|| deduped[a].evidence.len().cmp(&deduped[b].evidence.len()))
+                .then_with(|| {
+                    deduped[a]
+                        .description
+                        .len()
+                        .cmp(&deduped[b].description.len())
+                })
+        }) else {
+            continue;
+        };
+
+        for &idx in indices {
+            if idx != primary_idx {
+                remove_indices.push(idx);
+                merge_map.entry(primary_idx).or_default().push(idx);
+            }
+        }
+    }
+
+    if !remove_indices.is_empty() {
+        remove_indices.sort_unstable();
+        remove_indices.dedup();
+
+        // Merge evidence
+        for (&primary, secondaries) in &merge_map {
+            let extra_evidence: Vec<_> = secondaries
+                .iter()
+                .flat_map(|&i| deduped[i].evidence.clone())
+                .collect();
+            let any_exploitable = secondaries.iter().any(|&i| deduped[i].exploitable);
+
+            deduped[primary].evidence.extend(extra_evidence);
+            if any_exploitable {
+                deduped[primary].exploitable = true;
+            }
+        }
+
+        // Remove merged findings (iterate in reverse to preserve indices)
+        for &idx in remove_indices.iter().rev() {
+            deduped.remove(idx);
+        }
+    }
+
+    let after = deduped.len();
+    if before != after {
+        tracing::debug!(
+            "DAST CWE-based dedup: {before} → {after} findings ({} merged)",
+            before - after
+        );
+    }
+
+    deduped
+}
+
+/// Merge a duplicate DAST finding into a primary one.
+fn merge_dast_finding(primary: &mut DastFinding, duplicate: &DastFinding) {
+    primary.evidence.extend(duplicate.evidence.clone());
+    if duplicate.severity > primary.severity {
+        primary.severity = duplicate.severity.clone();
+    }
+    if duplicate.exploitable {
+        primary.exploitable = true;
+    }
+    // Keep the longer/better description
+    if duplicate.description.len() > primary.description.len() {
+        primary.description.clone_from(&duplicate.description);
+    }
+    // Keep remediation if primary doesn't have one
+    if primary.remediation.is_none() && duplicate.remediation.is_some() {
+        primary.remediation.clone_from(&duplicate.remediation);
+    }
+}
+
 #[cfg(test)]
 mod tests {
     use super::*;
+    use compliance_core::models::dast::DastVulnType;
+    use compliance_core::models::finding::Severity;
 
     #[test]
     fn fingerprint_is_deterministic() {
@@ -55,4 +257,159 @@ mod tests {
         let b = compute_fingerprint(&["a", "bc"]);
         assert_ne!(a, b);
     }
+
+    fn make_dast(title: &str, endpoint: &str, vuln_type: DastVulnType) -> DastFinding {
+        let mut f = DastFinding::new(
+            "run1".into(),
+            "target1".into(),
+            vuln_type,
+            title.into(),
+            format!("Description for {title}"),
+            Severity::Medium,
+            endpoint.into(),
+            "GET".into(),
+        );
+        f.cwe = Some("CWE-319".into());
+        f
+    }
+
+    #[test]
+    fn canonicalize_strips_domain_suffix() {
+        let canon = canonicalize_dast_title("Missing HSTS header for comp-dev.meghsakha.com");
+        assert!(!canon.contains("meghsakha"), "domain should be stripped");
+        assert!(
+            canon.contains("strict-transport-security"),
+            "hsts should be resolved: {canon}"
+        );
+    }
+
+    #[test]
+    fn canonicalize_resolves_synonyms() {
+        let a = canonicalize_dast_title("Missing HSTS header");
+        let b = canonicalize_dast_title("Missing strict-transport-security header");
+        assert_eq!(a, b);
+    }
+
+    #[test]
+    fn exact_dedup_merges_identical_findings() {
+        let f1 = make_dast(
+            "Missing strict-transport-security header",
+            "https://example.com",
+            DastVulnType::SecurityHeaderMissing,
+        );
+        let f2 = make_dast(
+            "Missing strict-transport-security header",
+            "https://example.com",
+            DastVulnType::SecurityHeaderMissing,
+        );
+        let result = dedup_dast_findings(vec![f1, f2]);
+        assert_eq!(result.len(), 1, "exact duplicates should be merged");
+    }
+
+    #[test]
+    fn synonym_dedup_merges_hsts_variants() {
+        let f1 = make_dast(
+            "Missing strict-transport-security header",
+            "https://example.com",
+            DastVulnType::SecurityHeaderMissing,
+        );
+        let f2 = make_dast(
+            "Missing HSTS header for example.com",
+            "https://example.com",
+            DastVulnType::TlsMisconfiguration,
+        );
+        let result = dedup_dast_findings(vec![f1, f2]);
+        assert_eq!(
+            result.len(),
+            1,
+            "HSTS synonym variants should merge to 1 finding"
+        );
+    }
+
+    #[test]
+    fn different_headers_not_merged() {
+        let mut f1 = make_dast(
+            "Missing x-content-type-options header",
+            "https://example.com",
+            DastVulnType::SecurityHeaderMissing,
+        );
+        f1.cwe = Some("CWE-16".into());
+        let mut f2 = make_dast(
+            "Missing permissions-policy header",
+            "https://example.com",
+            DastVulnType::SecurityHeaderMissing,
+        );
+        f2.cwe = Some("CWE-16".into());
+        // These share CWE-16 but are different headers — phase 2 will merge them
+        // since they share the same CWE+endpoint. This is acceptable because they
+        // have the same root cause (missing security headers configuration).
+        let result = dedup_dast_findings(vec![f1, f2]);
+        // CWE-based dedup will merge these into 1
+        assert!(
+            result.len() <= 2,
+            "same CWE+endpoint findings may be merged"
+        );
+    }
+
+    #[test]
+    fn different_endpoints_not_merged() {
+        let f1 = make_dast(
+            "Missing strict-transport-security header",
+            "https://example.com",
+            DastVulnType::SecurityHeaderMissing,
+        );
+        let f2 = make_dast(
+            "Missing strict-transport-security header",
+            "https://other.com",
+            DastVulnType::SecurityHeaderMissing,
+        );
+        let result = dedup_dast_findings(vec![f1, f2]);
+        assert_eq!(result.len(), 2, "different endpoints should not merge");
+    }
+
+    #[test]
+    fn dedup_preserves_highest_severity() {
+        let f1 = make_dast(
+            "Missing strict-transport-security header",
+            "https://example.com",
+            DastVulnType::SecurityHeaderMissing,
+        );
+        let mut f2 = make_dast(
+            "Missing strict-transport-security header",
+            "https://example.com",
+            DastVulnType::SecurityHeaderMissing,
+        );
+        f2.severity = Severity::High;
+        let result = dedup_dast_findings(vec![f1, f2]);
+        assert_eq!(result.len(), 1);
+        assert_eq!(result[0].severity, Severity::High);
+    }
+
+    #[test]
+    fn dedup_merges_evidence() {
+        let mut f1 = make_dast(
+            "Missing strict-transport-security header",
+            "https://example.com",
+            DastVulnType::SecurityHeaderMissing,
+        );
+        f1.evidence
+            .push(compliance_core::models::dast::DastEvidence {
+                request_method: "GET".into(),
+                request_url: "https://example.com".into(),
+                request_headers: None,
+                request_body: None,
+                response_status: 200,
+                response_headers: None,
+                response_snippet: Some("pass 1".into()),
+                screenshot_path: None,
+                payload: None,
+                response_time_ms: None,
+            });
+        let mut f2 = f1.clone();
+        f2.evidence[0].response_snippet = Some("pass 2".into());
+
+        let result = dedup_dast_findings(vec![f1, f2]);
+        assert_eq!(result.len(), 1);
+        assert_eq!(result[0].evidence.len(), 2, "evidence should be merged");
+    }
 }

compliance-agent/src/pipeline/gitleaks.rs

@@ -19,26 +19,33 @@ impl Scanner for GitleaksScanner {
 
     #[tracing::instrument(skip_all)]
     async fn scan(&self, repo_path: &Path, repo_id: &str) -> Result<ScanOutput, CoreError> {
-        let output = tokio::process::Command::new("gitleaks")
-            .args([
-                "detect",
-                "--source",
-                ".",
-                "--report-format",
-                "json",
-                "--report-path",
-                "/dev/stdout",
-                "--no-banner",
-                "--exit-code",
-                "0",
-            ])
-            .current_dir(repo_path)
-            .output()
-            .await
-            .map_err(|e| CoreError::Scanner {
-                scanner: "gitleaks".to_string(),
-                source: Box::new(e),
-            })?;
+        let output = tokio::time::timeout(
+            std::time::Duration::from_secs(300),
+            tokio::process::Command::new("gitleaks")
+                .args([
+                    "detect",
+                    "--source",
+                    ".",
+                    "--report-format",
+                    "json",
+                    "--report-path",
+                    "/dev/stdout",
+                    "--no-banner",
+                    "--exit-code",
+                    "0",
+                ])
+                .current_dir(repo_path)
+                .output(),
+        )
+        .await
+        .map_err(|_| CoreError::Scanner {
+            scanner: "gitleaks".to_string(),
+            source: "timed out after 5 minutes".into(),
+        })?
+        .map_err(|e| CoreError::Scanner {
+            scanner: "gitleaks".to_string(),
+            source: Box::new(e),
+        })?;
 
         if output.stdout.is_empty() {
             return Ok(ScanOutput::default());

compliance-agent/src/pipeline/mod.rs

@@ -8,6 +8,7 @@ mod issue_creation;
 pub mod lint;
 pub mod orchestrator;
 pub mod patterns;
+pub mod plan;
 mod pr_review;
 pub mod sbom;
 pub mod semgrep;

compliance-agent/src/pipeline/orchestrator.rs

@@ -10,12 +10,12 @@ use compliance_core::AgentConfig;
 use crate::database::Database;
 use crate::error::AgentError;
 use crate::llm::LlmClient;
-use crate::pipeline::code_review::CodeReviewScanner;
 use crate::pipeline::cve::CveScanner;
 use crate::pipeline::git::GitOps;
 use crate::pipeline::gitleaks::GitleaksScanner;
 use crate::pipeline::lint::LintScanner;
 use crate::pipeline::patterns::{GdprPatternScanner, OAuthPatternScanner};
+use crate::pipeline::plan::build_scan_plan;
 use crate::pipeline::sbom::SbomScanner;
 use crate::pipeline::semgrep::SemgrepScanner;
 
@@ -175,19 +175,26 @@ impl PipelineOrchestrator {
                 k.expose_secret().to_string()
             }),
         );
-        let cve_alerts = match async {
-            cve_scanner
-                .scan_dependencies(&repo_id, &mut sbom_entries)
-                .await
-        }
-        .instrument(tracing::info_span!("stage_cve_scanning"))
+        let cve_alerts = match tokio::time::timeout(
+            std::time::Duration::from_secs(600),
+            async {
+                cve_scanner
+                    .scan_dependencies(&repo_id, &mut sbom_entries)
+                    .await
+            }
+            .instrument(tracing::info_span!("stage_cve_scanning")),
+        )
         .await
         {
-            Ok(alerts) => alerts,
-            Err(e) => {
+            Ok(Ok(alerts)) => alerts,
+            Ok(Err(e)) => {
                 tracing::warn!("[{repo_id}] CVE scanning failed: {e}");
                 Vec::new()
             }
+            Err(_) => {
+                tracing::warn!("[{repo_id}] CVE scanning timed out after 10 minutes");
+                Vec::new()
+            }
         };
 
         // Stage 4: Pattern Scanning (GDPR + OAuth)
@@ -241,21 +248,6 @@ impl PipelineOrchestrator {
             Err(e) => tracing::warn!("[{repo_id}] Lint scanning failed: {e}"),
         }
 
-        // Stage 4c: LLM Code Review (only on incremental scans)
-        if let Some(old_sha) = &repo.last_scanned_commit {
-            tracing::info!("[{repo_id}] Stage 4c: LLM Code Review");
-            self.update_phase(scan_run_id, "code_review").await;
-            let review_output = async {
-                let reviewer = CodeReviewScanner::new(self.llm.clone());
-                reviewer
-                    .review_diff(&repo_path, &repo_id, old_sha, &current_sha)
-                    .await
-            }
-            .instrument(tracing::info_span!("stage_code_review"))
-            .await;
-            all_findings.extend(review_output.findings);
-        }
-
         // Stage 4.5: Graph Building
         tracing::info!("[{repo_id}] Stage 4.5: Graph Building");
         self.update_phase(scan_run_id, "graph_building").await;
@@ -331,20 +323,67 @@ impl PipelineOrchestrator {
                 .await?;
         }
 
-        // Persist CVE alerts (upsert by cve_id + repo_id)
-        for alert in &cve_alerts {
-            let filter = doc! {
-                "cve_id": &alert.cve_id,
-                "repo_id": &alert.repo_id,
-            };
-            let update = mongodb::bson::to_document(alert)
-                .map(|d| doc! { "$set": d })
-                .unwrap_or_else(|_| doc! {});
-            self.db
-                .cve_alerts()
-                .update_one(filter, update)
-                .upsert(true)
-                .await?;
+        // Persist CVE alerts and create notifications
+        {
+            use compliance_core::models::notification::{parse_severity, CveNotification};
+
+            let repo_name = repo.name.clone();
+            let mut new_notif_count = 0u32;
+
+            for alert in &cve_alerts {
+                // Upsert the alert
+                let filter = doc! {
+                    "cve_id": &alert.cve_id,
+                    "repo_id": &alert.repo_id,
+                };
+                let update = mongodb::bson::to_document(alert)
+                    .map(|d| doc! { "$set": d })
+                    .unwrap_or_else(|_| doc! {});
+                self.db
+                    .cve_alerts()
+                    .update_one(filter, update)
+                    .upsert(true)
+                    .await?;
+
+                // Create notification (dedup by cve_id + repo + package + version)
+                let notif_filter = doc! {
+                    "cve_id": &alert.cve_id,
+                    "repo_id": &alert.repo_id,
+                    "package_name": &alert.affected_package,
+                    "package_version": &alert.affected_version,
+                };
+                let severity = parse_severity(alert.severity.as_deref(), alert.cvss_score);
+                let mut notification = CveNotification::new(
+                    alert.cve_id.clone(),
+                    repo_id.clone(),
+                    repo_name.clone(),
+                    alert.affected_package.clone(),
+                    alert.affected_version.clone(),
+                    severity,
+                );
+                notification.cvss_score = alert.cvss_score;
+                notification.summary = alert.summary.clone();
+                notification.url = Some(format!("https://osv.dev/vulnerability/{}", alert.cve_id));
+
+                let notif_update = doc! {
+                    "$setOnInsert": mongodb::bson::to_bson(&notification).unwrap_or_default()
+                };
+                if let Ok(result) = self
+                    .db
+                    .cve_notifications()
+                    .update_one(notif_filter, notif_update)
+                    .upsert(true)
+                    .await
+                {
+                    if result.upserted_id.is_some() {
+                        new_notif_count += 1;
+                    }
+                }
+            }
+
+            if new_notif_count > 0 {
+                tracing::info!("[{repo_id}] Created {new_notif_count} CVE notification(s)");
+            }
         }
 
         // Stage 6: Issue Creation
@@ -381,6 +420,260 @@ impl PipelineOrchestrator {
         Ok(new_count)
     }
 
+    /// Unified entry point (behind `UNIFIED_PIPELINE`): run a scan for an
+    /// `OnboardedTarget`. Mirrors [`Self::run`] but sources the target from
+    /// `onboarded_targets` and dispatches by the scan plan.
+    #[tracing::instrument(skip_all, fields(target_id = %target_id, trigger = ?trigger))]
+    pub async fn run_target(
+        &self,
+        target_id: &str,
+        trigger: ScanTrigger,
+    ) -> Result<(), AgentError> {
+        let oid = mongodb::bson::oid::ObjectId::parse_str(target_id)
+            .map_err(|e| AgentError::Other(e.to_string()))?;
+        let target = self
+            .db
+            .onboarded_targets()
+            .find_one(doc! { "_id": oid })
+            .await?
+            .ok_or_else(|| AgentError::Other(format!("Onboarded target {target_id} not found")))?;
+
+        let scan_run = ScanRun::new(target_id.to_string(), trigger);
+        let insert = self.db.scan_runs().insert_one(&scan_run).await?;
+        let scan_run_id = insert
+            .inserted_id
+            .as_object_id()
+            .map(|id| id.to_hex())
+            .unwrap_or_default();
+
+        let result = self.run_target_pipeline(&target, &scan_run_id).await;
+        match &result {
+            Ok(count) => {
+                self.db
+                    .scan_runs()
+                    .update_one(
+                        doc! { "_id": &insert.inserted_id },
+                        doc! { "$set": {
+                            "status": "completed",
+                            "current_phase": "completed",
+                            "new_findings_count": *count as i64,
+                            "completed_at": mongodb::bson::DateTime::now(),
+                        } },
+                    )
+                    .await?;
+            }
+            Err(e) => {
+                tracing::error!(target_id, error = %e, "Unified scan pipeline failed");
+                self.db
+                    .scan_runs()
+                    .update_one(
+                        doc! { "_id": &insert.inserted_id },
+                        doc! { "$set": {
+                            "status": "failed",
+                            "error_message": e.to_string(),
+                            "completed_at": mongodb::bson::DateTime::now(),
+                        } },
+                    )
+                    .await?;
+            }
+        }
+        result.map(|_| ())
+    }
+
+    /// Run the applicable scans for a target. For a code target this reuses the
+    /// full legacy pipeline over the code artifact (clone → SAST umbrella →
+    /// triage → persist → issues → DAST); firmware/PLC/mobile scanners are
+    /// follow-ups (#128/#129/#130). Returns the number of new findings.
+    async fn run_target_pipeline(
+        &self,
+        target: &OnboardedTarget,
+        scan_run_id: &str,
+    ) -> Result<u32, AgentError> {
+        let target_id = target.id.map(|id| id.to_hex()).unwrap_or_default();
+        let plan = build_scan_plan(target);
+        tracing::info!(
+            target_id = %target_id,
+            target_type = %target.target_type,
+            planned_steps = plan.steps.len(),
+            "Unified pipeline: scan plan built"
+        );
+
+        // Ingest + classify (tramiton for firmware) and store the detected type.
+        self.classify_and_store(target, &target_id, scan_run_id)
+            .await;
+        // Provision a DAST target from a LiveUrl artifact so DAST fires for
+        // wizard-created targets, not just migrated ones.
+        self.ensure_dast_target(target, &plan).await;
+
+        match target.code_artifact() {
+            Some(code) if code.kind == ArtifactKind::GitRepo => {
+                let repo = repo_view_from_target(target, code);
+                let new_count = self.run_pipeline(&repo, scan_run_id).await?;
+                self.finalize_target(target, &repo, new_count).await?;
+                Ok(new_count)
+            }
+            Some(_) => {
+                tracing::warn!(
+                    target_id = %target_id,
+                    "Unified pipeline: source-archive scanning not yet wired; skipping"
+                );
+                Ok(0)
+            }
+            None => {
+                // No code to scan. Firmware/PLC/mobile static scanners land in
+                // #128/#129/#130; DAST for a running URL still works when a
+                // DastTarget row exists (migrated targets).
+                tracing::info!(
+                    target_id = %target_id,
+                    "Unified pipeline: no code artifact; attempting DAST only"
+                );
+                self.update_phase(scan_run_id, "dast_scanning").await;
+                self.maybe_trigger_dast(&target_id, scan_run_id).await;
+                Ok(0)
+            }
+        }
+    }
+
+    /// Ingest the target's artifacts, classify (tramiton for firmware/RTOS/Yocto,
+    /// heuristics otherwise), and store the detected classification on the target.
+    /// Best-effort — never fails the scan.
+    async fn classify_and_store(
+        &self,
+        target: &OnboardedTarget,
+        target_id: &str,
+        scan_run_id: &str,
+    ) {
+        self.update_phase(scan_run_id, "classification").await;
+        let ctx = crate::ingest::IngestContext::from_config(&self.config, target_id);
+        let ingest_set = match crate::ingest::ingest_all(target, &ctx) {
+            Ok(set) => set,
+            Err(e) => {
+                tracing::warn!(target_id, error = %e, "Unified pipeline: ingest for classification failed");
+                return;
+            }
+        };
+        let working_paths = ingest_set.working_paths();
+        match crate::classify::classify_target(
+            target,
+            &working_paths,
+            &crate::classify::TramitonNative,
+        )
+        .await
+        {
+            Ok(classification) => {
+                tracing::info!(
+                    target_id,
+                    suggested = %classification.suggested,
+                    "Unified pipeline: classified target"
+                );
+                if let (Some(oid), Ok(bson)) = (target.id, mongodb::bson::to_bson(&classification))
+                {
+                    let _ = self
+                        .db
+                        .onboarded_targets()
+                        .update_one(
+                            doc! { "_id": oid },
+                            doc! { "$set": { "classification": bson } },
+                        )
+                        .await;
+                }
+            }
+            Err(e) => {
+                tracing::warn!(target_id, error = %e, "Unified pipeline: classification failed")
+            }
+        }
+    }
+
+    /// If the target has a `LiveUrl` artifact and DAST is planned, provision a
+    /// `DastTarget` (keyed by `repo_id` = target id) so the existing DAST trigger
+    /// fires for wizard-created targets. Idempotent.
+    async fn ensure_dast_target(
+        &self,
+        target: &OnboardedTarget,
+        plan: &crate::pipeline::plan::ScanPlan,
+    ) {
+        if !plan.has(ScanType::Dast) {
+            return;
+        }
+        let (Some(url), Some(oid)) = (target.live_url(), target.id) else {
+            return;
+        };
+        let target_id = oid.to_hex();
+        if self
+            .db
+            .dast_targets()
+            .find_one(doc! { "repo_id": &target_id })
+            .await
+            .ok()
+            .flatten()
+            .is_some()
+        {
+            return; // already provisioned
+        }
+        let kind = url
+            .web
+            .as_ref()
+            .map(|w| w.target_kind.clone())
+            .unwrap_or(DastTargetType::WebApp);
+        let mut dast = DastTarget::new(target.name.clone(), url.source_ref.clone(), kind);
+        dast.repo_id = Some(target_id);
+        if let Some(web) = &url.web {
+            dast.excluded_paths = web.excluded_paths.clone();
+            dast.max_crawl_depth = web.max_crawl_depth;
+            dast.rate_limit = web.rate_limit;
+            dast.allow_destructive = web.allow_destructive;
+        }
+        if let Some(auth) = &url.auth {
+            dast.auth_config = Some(DastAuthConfig {
+                method: auth.method.clone(),
+                login_url: auth.login_url.clone(),
+                username: auth.username.clone(),
+                password: None,
+                token: auth.secret.clone(),
+                headers: auth.headers.clone(),
+            });
+        }
+        if let Err(e) = self.db.dast_targets().insert_one(&dast).await {
+            tracing::warn!(error = %e, "Unified pipeline: failed to provision DAST target");
+        }
+    }
+
+    /// Sync the onboarded-target document after a scan: bump `findings_count`
+    /// and advance the git artifact's `last_scanned_commit` watermark.
+    async fn finalize_target(
+        &self,
+        target: &OnboardedTarget,
+        repo: &TrackedRepository,
+        new_count: u32,
+    ) -> Result<(), AgentError> {
+        let oid = match target.id {
+            Some(id) => id,
+            None => return Ok(()),
+        };
+        self.db
+            .onboarded_targets()
+            .update_one(
+                doc! { "_id": oid },
+                doc! {
+                    "$inc": { "findings_count": new_count as i64 },
+                    "$set": { "updated_at": mongodb::bson::DateTime::now() },
+                },
+            )
+            .await?;
+
+        let repo_path = std::path::Path::new(&self.config.git_clone_base_path).join(&repo.name);
+        if let (Ok(sha), Some(code)) = (GitOps::get_head_sha(&repo_path), target.code_artifact()) {
+            self.db
+                .onboarded_targets()
+                .update_one(
+                    doc! { "_id": oid, "artifacts.id": &code.id },
+                    doc! { "$set": { "artifacts.$.git.last_scanned_commit": sha } },
+                )
+                .await?;
+        }
+        Ok(())
+    }
+
     pub(super) async fn update_phase(&self, scan_run_id: &str, phase: &str) {
         if let Ok(oid) = mongodb::bson::oid::ObjectId::parse_str(scan_run_id) {
             let _ = self
@@ -398,6 +691,37 @@ impl PipelineOrchestrator {
     }
 }
 
+/// Build a legacy `TrackedRepository` view from an onboarded target's code
+/// artifact, so the unified pipeline can reuse the existing repo pipeline. The
+/// inverse of the migration's `repo_to_target`. `_id` is preserved so findings
+/// and DAST lookups resolve against the same key.
+fn repo_view_from_target(target: &OnboardedTarget, code: &Artifact) -> TrackedRepository {
+    let mut repo = TrackedRepository::new(target.name.clone(), code.source_ref.clone());
+    repo.id = target.id;
+    if let Some(git) = &code.git {
+        repo.default_branch = git.default_branch.clone();
+        repo.last_scanned_commit = git.last_scanned_commit.clone();
+        repo.local_path = git.local_path.clone();
+    }
+    if let Some(auth) = &code.auth {
+        repo.auth_token = auth.secret.clone();
+        repo.auth_username = auth.username.clone();
+    }
+    if let Some(it) = &target.scan_config.issue_tracker {
+        repo.tracker_type = it.tracker_type.clone();
+        repo.tracker_owner = it.owner.clone();
+        repo.tracker_repo = it.repo.clone();
+        repo.tracker_token = it.token.clone();
+    }
+    repo.scan_schedule = target.scan_schedule.clone();
+    repo.webhook_enabled = target.webhook_enabled;
+    repo.webhook_secret = target.webhook_secret.clone();
+    repo.findings_count = target.findings_count;
+    repo.created_at = target.created_at;
+    repo.updated_at = target.updated_at;
+    repo
+}
+
 /// Extract the scheme + host from a git URL.
 /// e.g. "https://gitea.example.com/owner/repo.git" -> "https://gitea.example.com"
 /// e.g. "ssh://git@gitea.example.com:22/owner/repo.git" -> "https://gitea.example.com"
@@ -422,3 +746,50 @@ pub(super) fn extract_base_url(git_url: &str) -> Option<String> {
         None
     }
 }
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use compliance_core::models::{
+        Artifact, ArtifactAuth, IssueTrackerConfig, TargetType, TrackerType,
+    };
+
+    #[test]
+    fn repo_view_preserves_id_git_auth_and_tracker() {
+        let mut target = OnboardedTarget::new("acme".to_string(), TargetType::WebApp);
+        target.id = Some(mongodb::bson::oid::ObjectId::new());
+        target.findings_count = 3;
+        target.scan_config.issue_tracker = Some(IssueTrackerConfig {
+            tracker_type: Some(TrackerType::Gitea),
+            owner: Some("acme".to_string()),
+            repo: Some("web".to_string()),
+            token: Some("tt".to_string()),
+        });
+
+        let mut artifact = Artifact::git_repo("https://git/acme.git", "develop");
+        if let Some(git) = artifact.git.as_mut() {
+            git.last_scanned_commit = Some("abc123".to_string());
+        }
+        artifact.auth = Some(ArtifactAuth {
+            method: "token".to_string(),
+            username: Some("bob".to_string()),
+            secret: Some("pat".to_string()),
+            ..Default::default()
+        });
+        target.artifacts.push(artifact);
+
+        let code = target.code_artifact().expect("code artifact");
+        let repo = repo_view_from_target(&target, code);
+
+        assert_eq!(repo.id, target.id); // preserved
+        assert_eq!(repo.git_url, "https://git/acme.git");
+        assert_eq!(repo.default_branch, "develop");
+        assert_eq!(repo.last_scanned_commit.as_deref(), Some("abc123"));
+        assert_eq!(repo.auth_token.as_deref(), Some("pat"));
+        assert_eq!(repo.auth_username.as_deref(), Some("bob"));
+        assert_eq!(repo.tracker_type, Some(TrackerType::Gitea));
+        assert_eq!(repo.tracker_owner.as_deref(), Some("acme"));
+        assert_eq!(repo.findings_count, 3);
+    }
+}

compliance-agent/src/pipeline/patterns.rs

@@ -33,6 +33,7 @@ struct PatternRule {
     file_extensions: Vec<String>,
 }
 
+#[allow(clippy::new_without_default)]
 impl GdprPatternScanner {
     pub fn new() -> Self {
         let patterns = vec![
@@ -98,6 +99,7 @@ impl Scanner for GdprPatternScanner {
     }
 }
 
+#[allow(clippy::new_without_default)]
 impl OAuthPatternScanner {
     pub fn new() -> Self {
         let patterns = vec![
@@ -213,7 +215,7 @@ fn scan_with_patterns(
                         repo_id.to_string(),
                         fingerprint,
                         scanner_name.to_string(),
-                        scan_type.clone(),
+                        scan_type,
                         pattern.title.clone(),
                         pattern.description.clone(),
                         pattern.severity.clone(),

compliance-agent/src/pipeline/plan.rs

@@ -0,0 +1,195 @@
+//! The scan plan.
+//!
+//! [`build_scan_plan`] turns an [`OnboardedTarget`] into the concrete ordered
+//! list of scans to run, each bound to the artifact it consumes. It intersects
+//! the scan-applicability matrix ([`applicable_scans`]) with the target's
+//! `scan_config` overrides: a scan runs when its required artifact is present and
+//! it is either on by default or explicitly enabled, and is not explicitly
+//! disabled. This is the decision engine the unified pipeline (`run_target`)
+//! executes.
+
+use compliance_core::models::{Artifact, ArtifactKind, OnboardedTarget, ScanPhase, ScanType};
+use compliance_core::scan_matrix::applicable_scans;
+
+/// One scan to run, bound to the artifact it operates on.
+#[derive(Debug, Clone, PartialEq)]
+pub struct ScanStep {
+    /// The scan to run.
+    pub scan_type: ScanType,
+    /// The pipeline phase to report while it runs.
+    pub phase: ScanPhase,
+    /// The id of the artifact this scan consumes ([`Artifact::id`]).
+    pub artifact_id: String,
+}
+
+/// The ordered set of scans to run for a target.
+#[derive(Debug, Clone, Default, PartialEq)]
+pub struct ScanPlan {
+    /// The scans, in matrix order.
+    pub steps: Vec<ScanStep>,
+}
+
+impl ScanPlan {
+    /// Whether the plan contains a step for the given scan type.
+    pub fn has(&self, scan: ScanType) -> bool {
+        self.steps.iter().any(|s| s.scan_type == scan)
+    }
+
+    /// Whether the plan is empty (nothing to run).
+    pub fn is_empty(&self) -> bool {
+        self.steps.is_empty()
+    }
+}
+
+/// Build the scan plan for a target: matrix defaults ∩ `scan_config`, each scan
+/// bound to the artifact it consumes. Scans whose required artifact is absent, or
+/// that are disabled, or off-by-default and not explicitly enabled, are dropped.
+pub fn build_scan_plan(target: &OnboardedTarget) -> ScanPlan {
+    let enabled = &target.scan_config.enabled_scans;
+    let disabled = &target.scan_config.disabled_scans;
+
+    let mut steps = Vec::new();
+    for option in applicable_scans(target) {
+        // Required artifact missing → not runnable.
+        if option.blocked_reason.is_some() {
+            continue;
+        }
+        // Explicit opt-out wins.
+        if disabled.contains(&option.scan) {
+            continue;
+        }
+        // Run if on by default, or explicitly enabled.
+        if !option.default_on && !enabled.contains(&option.scan) {
+            continue;
+        }
+        let Some(artifact) = resolve_artifact(target, option.required_artifact) else {
+            continue;
+        };
+        steps.push(ScanStep {
+            scan_type: option.scan,
+            phase: phase_for(option.scan),
+            artifact_id: artifact.id.clone(),
+        });
+    }
+    ScanPlan { steps }
+}
+
+/// Resolve the artifact a scan consumes. A "code" requirement (represented by
+/// `GitRepo`) is satisfied by a git repo *or* a source archive.
+fn resolve_artifact(target: &OnboardedTarget, required: Option<ArtifactKind>) -> Option<&Artifact> {
+    match required {
+        Some(ArtifactKind::GitRepo) => target.code_artifact(),
+        Some(kind) => target.first_of(kind),
+        None => target.code_artifact().or_else(|| target.artifacts.first()),
+    }
+}
+
+/// The pipeline phase reported while a given scan runs.
+fn phase_for(scan: ScanType) -> ScanPhase {
+    match scan {
+        ScanType::Sast => ScanPhase::Sast,
+        ScanType::Sbom => ScanPhase::SbomGeneration,
+        ScanType::Cve => ScanPhase::CveScanning,
+        ScanType::Gdpr | ScanType::OAuth => ScanPhase::PatternScanning,
+        ScanType::SecretDetection => ScanPhase::SecretDetection,
+        ScanType::Lint => ScanPhase::LintScanning,
+        ScanType::CodeReview => ScanPhase::CodeReview,
+        ScanType::Graph => ScanPhase::GraphBuilding,
+        ScanType::Dast => ScanPhase::DastScanning,
+        ScanType::FirmwareStatic => ScanPhase::FirmwareStatic,
+        ScanType::PlcControlLogic => ScanPhase::PlcAnalysis,
+        ScanType::MobileStatic => ScanPhase::MobileStatic,
+        ScanType::ContainerScan => ScanPhase::ContainerScan,
+    }
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use compliance_core::models::{PlcFormat, TargetType};
+
+    fn target(target_type: TargetType, artifacts: Vec<Artifact>) -> OnboardedTarget {
+        let mut t = OnboardedTarget::new("t".to_string(), target_type);
+        t.artifacts = artifacts;
+        t
+    }
+
+    fn step_for<'a>(plan: &'a ScanPlan, scan: ScanType) -> Option<&'a ScanStep> {
+        plan.steps.iter().find(|s| s.scan_type == scan)
+    }
+
+    #[test]
+    fn webapp_with_code_and_url_runs_sast_and_dast_bound_to_the_right_artifacts() {
+        let code = Artifact::git_repo("https://git/x", "main");
+        let url = Artifact::live_url("https://x");
+        let (code_id, url_id) = (code.id.clone(), url.id.clone());
+        let t = target(TargetType::WebApp, vec![code, url]);
+
+        let plan = build_scan_plan(&t);
+        let sast = step_for(&plan, ScanType::Sast).expect("sast planned");
+        assert_eq!(sast.artifact_id, code_id);
+        assert_eq!(sast.phase, ScanPhase::Sast);
+        let dast = step_for(&plan, ScanType::Dast).expect("dast planned");
+        assert_eq!(dast.artifact_id, url_id);
+    }
+
+    #[test]
+    fn webapp_without_url_omits_dast() {
+        let t = target(TargetType::WebApp, vec![Artifact::git_repo("u", "main")]);
+        let plan = build_scan_plan(&t);
+        assert!(plan.has(ScanType::Sast));
+        assert!(!plan.has(ScanType::Dast));
+    }
+
+    #[test]
+    fn code_scan_binds_to_source_archive_when_no_git_repo() {
+        let arc = Artifact::source_archive("src.zip");
+        let arc_id = arc.id.clone();
+        let t = target(TargetType::BackendService, vec![arc]);
+        let plan = build_scan_plan(&t);
+        let sast = step_for(&plan, ScanType::Sast).expect("sast planned");
+        assert_eq!(sast.artifact_id, arc_id);
+    }
+
+    #[test]
+    fn firmware_sbom_and_cve_bind_to_the_firmware_image() {
+        let fw = Artifact::firmware_image("fw.bin");
+        let fw_id = fw.id.clone();
+        let t = target(TargetType::FirmwareBareMetal, vec![fw]);
+        let plan = build_scan_plan(&t);
+        let sbom = step_for(&plan, ScanType::Sbom).expect("sbom planned");
+        assert_eq!(sbom.artifact_id, fw_id);
+        assert!(step_for(&plan, ScanType::FirmwareStatic).is_some());
+        assert!(!plan.has(ScanType::Dast));
+    }
+
+    #[test]
+    fn plc_plans_only_control_logic() {
+        let plc = Artifact::plc_project("p.xml", PlcFormat::PlcopenXml);
+        let t = target(TargetType::PlcSps, vec![plc]);
+        let plan = build_scan_plan(&t);
+        assert_eq!(plan.steps.len(), 1);
+        assert_eq!(plan.steps[0].scan_type, ScanType::PlcControlLogic);
+        assert_eq!(plan.steps[0].phase, ScanPhase::PlcAnalysis);
+    }
+
+    #[test]
+    fn disabled_scan_is_dropped_and_off_by_default_can_be_enabled() {
+        let mut t = target(TargetType::WebApp, vec![Artifact::git_repo("u", "main")]);
+        t.scan_config.disabled_scans = vec![ScanType::Lint];
+        // CodeReview is off by default for web; enable it explicitly.
+        t.scan_config.enabled_scans = vec![ScanType::CodeReview];
+        let plan = build_scan_plan(&t);
+        assert!(!plan.has(ScanType::Lint));
+        assert!(plan.has(ScanType::CodeReview));
+        assert!(plan.has(ScanType::Sast));
+    }
+
+    #[test]
+    fn no_code_artifact_yields_empty_plan_for_web() {
+        let t = target(TargetType::WebApp, vec![]);
+        let plan = build_scan_plan(&t);
+        assert!(plan.is_empty());
+    }
+}

compliance-agent/src/pipeline/pr_review.rs

@@ -1,5 +1,6 @@
 use compliance_core::models::*;
 
+use super::dedup::compute_fingerprint;
 use super::orchestrator::PipelineOrchestrator;
 use crate::error::AgentError;
 use crate::pipeline::code_review::CodeReviewScanner;
@@ -89,12 +90,37 @@ impl PipelineOrchestrator {
             return Ok(());
         }
 
+        // Dedup findings by fingerprint to avoid duplicate comments
+        let mut seen_fps = std::collections::HashSet::new();
+        let mut unique_findings: Vec<&Finding> = Vec::new();
+        for finding in &pr_findings {
+            let fp = compute_fingerprint(&[
+                repo_id,
+                &pr_number.to_string(),
+                finding.file_path.as_deref().unwrap_or(""),
+                &finding.line_number.unwrap_or(0).to_string(),
+                &finding.title,
+            ]);
+            if seen_fps.insert(fp) {
+                unique_findings.push(finding);
+            }
+        }
+
+        let pr_findings = unique_findings;
+
         // Build review comments from findings
         let mut review_comments = Vec::new();
         for finding in &pr_findings {
             if let (Some(path), Some(line)) = (&finding.file_path, finding.line_number) {
+                let fp = compute_fingerprint(&[
+                    repo_id,
+                    &pr_number.to_string(),
+                    path,
+                    &line.to_string(),
+                    &finding.title,
+                ]);
                 let comment_body = format!(
-                    "**[{}] {}**\n\n{}\n\n*Scanner: {} | {}*",
+                    "**[{}] {}**\n\n{}\n\n*Scanner: {} | {}*\n\n<!-- compliance-fp:{fp} -->",
                     finding.severity,
                     finding.title,
                     finding.description,
@@ -123,6 +149,17 @@ impl PipelineOrchestrator {
                 .join("\n"),
         );
 
+        if review_comments.is_empty() {
+            // All findings were on files/lines we can't comment on inline
+            if let Err(e) = tracker
+                .create_pr_review(owner, tracker_repo_name, pr_number, &summary, Vec::new())
+                .await
+            {
+                tracing::warn!("[{repo_id}] Failed to post PR review summary: {e}");
+            }
+            return Ok(());
+        }
+
         if let Err(e) = tracker
             .create_pr_review(
                 owner,

compliance-agent/src/pipeline/sbom/syft.rs

@@ -5,20 +5,26 @@ use compliance_core::CoreError;
 
 #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
 pub(super) async fn run_syft(repo_path: &Path, repo_id: &str) -> Result<Vec<SbomEntry>, CoreError> {
-    let output = tokio::process::Command::new("syft")
-        .arg(repo_path)
-        .args(["-o", "cyclonedx-json"])
-        // Enable remote license lookups for all ecosystems
-        .env("SYFT_GOLANG_SEARCH_REMOTE_LICENSES", "true")
-        .env("SYFT_JAVASCRIPT_SEARCH_REMOTE_LICENSES", "true")
-        .env("SYFT_PYTHON_SEARCH_REMOTE_LICENSES", "true")
-        .env("SYFT_JAVA_USE_NETWORK", "true")
-        .output()
-        .await
-        .map_err(|e| CoreError::Scanner {
-            scanner: "syft".to_string(),
-            source: Box::new(e),
-        })?;
+    let output = tokio::time::timeout(
+        std::time::Duration::from_secs(300),
+        tokio::process::Command::new("syft")
+            .arg(repo_path)
+            .args(["-o", "cyclonedx-json"])
+            .env("SYFT_GOLANG_SEARCH_REMOTE_LICENSES", "true")
+            .env("SYFT_JAVASCRIPT_SEARCH_REMOTE_LICENSES", "true")
+            .env("SYFT_PYTHON_SEARCH_REMOTE_LICENSES", "true")
+            .env("SYFT_JAVA_USE_NETWORK", "true")
+            .output(),
+    )
+    .await
+    .map_err(|_| CoreError::Scanner {
+        scanner: "syft".to_string(),
+        source: "timed out after 5 minutes".into(),
+    })?
+    .map_err(|e| CoreError::Scanner {
+        scanner: "syft".to_string(),
+        source: Box::new(e),
+    })?;
 
     if !output.status.success() {
         let stderr = String::from_utf8_lossy(&output.stderr);

compliance-agent/src/pipeline/semgrep.rs

@@ -19,15 +19,30 @@ impl Scanner for SemgrepScanner {
 
     #[tracing::instrument(skip_all)]
     async fn scan(&self, repo_path: &Path, repo_id: &str) -> Result<ScanOutput, CoreError> {
-        let output = tokio::process::Command::new("semgrep")
-            .args(["--config=auto", "--json", "--quiet"])
-            .arg(repo_path)
-            .output()
-            .await
-            .map_err(|e| CoreError::Scanner {
-                scanner: "semgrep".to_string(),
-                source: Box::new(e),
-            })?;
+        let output = tokio::time::timeout(
+            std::time::Duration::from_secs(600),
+            tokio::process::Command::new("semgrep")
+                .args([
+                    "--config=auto",
+                    "--json",
+                    "--quiet",
+                    "--max-memory",
+                    "500",
+                    "--jobs",
+                    "1",
+                ])
+                .arg(repo_path)
+                .output(),
+        )
+        .await
+        .map_err(|_| CoreError::Scanner {
+            scanner: "semgrep".to_string(),
+            source: "timed out after 10 minutes".into(),
+        })?
+        .map_err(|e| CoreError::Scanner {
+            scanner: "semgrep".to_string(),
+            source: Box::new(e),
+        })?;
 
         if !output.status.success() && output.stdout.is_empty() {
             let stderr = String::from_utf8_lossy(&output.stderr);

compliance-agent/src/rag/pipeline.rs

@@ -6,11 +6,16 @@ use compliance_core::models::embedding::{CodeEmbedding, EmbeddingBuildRun, Embed
 use compliance_core::models::graph::CodeNode;
 use compliance_graph::graph::chunking::extract_chunks;
 use compliance_graph::graph::embedding_store::EmbeddingStore;
+use futures_util::stream::{FuturesUnordered, StreamExt};
 use tracing::{error, info};
 
 use crate::error::AgentError;
 use crate::llm::LlmClient;
 
+const EMBED_BATCH_SIZE: usize = 20;
+const EMBED_CONCURRENCY: usize = 4;
+const EMBED_FLUSH_EVERY: usize = 200;
+
 /// RAG pipeline for building embeddings and performing retrieval
 pub struct RagPipeline {
     llm: Arc<LlmClient>,
@@ -77,25 +82,33 @@ impl RagPipeline {
             .await
             .map_err(|e| AgentError::Other(format!("Failed to delete old embeddings: {e}")))?;
 
-        // Step 3: Batch embed (small batches to stay within model limits)
-        let batch_size = 20;
-        let mut all_embeddings = Vec::new();
+        // Step 3: Batch embed with bounded concurrency. Flush to Mongo and
+        // update progress periodically so the dashboard can show live status.
+        let mut pending = Vec::with_capacity(EMBED_FLUSH_EVERY);
         let mut embedded_count = 0u32;
 
-        for batch_start in (0..chunks.len()).step_by(batch_size) {
-            let batch_end = (batch_start + batch_size).min(chunks.len());
-            let batch_chunks = &chunks[batch_start..batch_end];
+        // Build the list of batch indices to process.
+        let batches: Vec<(usize, usize)> = (0..chunks.len())
+            .step_by(EMBED_BATCH_SIZE)
+            .map(|start| (start, (start + EMBED_BATCH_SIZE).min(chunks.len())))
+            .collect();
 
-            // Prepare texts: context_header + content
-            let texts: Vec<String> = batch_chunks
-                .iter()
-                .map(|c| format!("{}\n{}", c.context_header, c.content))
-                .collect();
+        let mut batch_iter = batches.into_iter();
+        let mut in_flight = FuturesUnordered::new();
 
-            match self.llm.embed(texts).await {
-                Ok(vectors) => {
+        // Prime up to EMBED_CONCURRENCY batches.
+        for _ in 0..EMBED_CONCURRENCY {
+            if let Some((start, end)) = batch_iter.next() {
+                in_flight.push(self.embed_batch(&chunks[start..end], start, end));
+            }
+        }
+
+        while let Some(result) = in_flight.next().await {
+            match result {
+                Ok((start, end, vectors)) => {
+                    let batch_chunks = &chunks[start..end];
                     for (chunk, embedding) in batch_chunks.iter().zip(vectors) {
-                        all_embeddings.push(CodeEmbedding {
+                        pending.push(CodeEmbedding {
                             id: None,
                             repo_id: repo_id.to_string(),
                             graph_build_id: graph_build_id.to_string(),
@@ -113,9 +126,45 @@ impl RagPipeline {
                         });
                     }
                     embedded_count += batch_chunks.len() as u32;
+
+                    // Flush pending embeddings to Mongo periodically and update progress.
+                    if pending.len() >= EMBED_FLUSH_EVERY {
+                        self.embedding_store
+                            .store_embeddings(&pending)
+                            .await
+                            .map_err(|e| {
+                                AgentError::Other(format!("Failed to store embeddings: {e}"))
+                            })?;
+                        pending.clear();
+                    }
+
+                    // Always update the progress counter on the build doc — even if
+                    // we haven't flushed embeddings yet — so the UI shows movement.
+                    if let Err(e) = self
+                        .embedding_store
+                        .update_build(
+                            repo_id,
+                            graph_build_id,
+                            EmbeddingBuildStatus::Running,
+                            embedded_count,
+                            None,
+                        )
+                        .await
+                    {
+                        error!("[{repo_id}] Failed to update build progress: {e}");
+                    }
+
+                    // Queue the next batch to keep concurrency saturated.
+                    if let Some((s, e)) = batch_iter.next() {
+                        in_flight.push(self.embed_batch(&chunks[s..e], s, e));
+                    }
                 }
                 Err(e) => {
                     error!("[{repo_id}] Embedding batch failed: {e}");
+                    // Flush whatever we have so partial progress isn't lost.
+                    if !pending.is_empty() {
+                        let _ = self.embedding_store.store_embeddings(&pending).await;
+                    }
                     build.status = EmbeddingBuildStatus::Failed;
                     build.error_message = Some(e.to_string());
                     build.completed_at = Some(Utc::now());
@@ -134,11 +183,13 @@ impl RagPipeline {
             }
         }
 
-        // Step 4: Store all embeddings
-        self.embedding_store
-            .store_embeddings(&all_embeddings)
-            .await
-            .map_err(|e| AgentError::Other(format!("Failed to store embeddings: {e}")))?;
+        // Step 4: Flush any remaining embeddings
+        if !pending.is_empty() {
+            self.embedding_store
+                .store_embeddings(&pending)
+                .await
+                .map_err(|e| AgentError::Other(format!("Failed to store embeddings: {e}")))?;
+        }
 
         // Step 5: Update build status
         build.status = EmbeddingBuildStatus::Completed;
@@ -161,4 +212,21 @@ impl RagPipeline {
         );
         Ok(build)
     }
+
+    /// Embed one batch of chunks. Returns the (start, end, vectors) tuple so
+    /// out-of-order completion from `FuturesUnordered` can still be reconciled
+    /// against the original chunk slice.
+    async fn embed_batch(
+        &self,
+        batch_chunks: &[compliance_graph::graph::chunking::CodeChunk],
+        start: usize,
+        end: usize,
+    ) -> Result<(usize, usize, Vec<Vec<f64>>), AgentError> {
+        let texts: Vec<String> = batch_chunks
+            .iter()
+            .map(|c| format!("{}\n{}", c.context_header, c.content))
+            .collect();
+        let vectors = self.llm.embed(texts).await?;
+        Ok((start, end, vectors))
+    }
 }

compliance-agent/src/scheduler.rs

@@ -4,8 +4,21 @@ use tokio_cron_scheduler::{Job, JobScheduler};
 use compliance_core::models::ScanTrigger;
 
 use crate::agent::ComplianceAgent;
+use crate::database::Database;
 use crate::error::AgentError;
 
+/// Default tenant the scheduler runs against when neither the tenant
+/// registry nor `SCHEDULER_TENANT_IDS` are configured. Matches the
+/// dev-injector default so a bare `cargo run` has the scheduler
+/// scanning whatever lives in `<prefix>_dev`.
+const DEFAULT_SCHEDULER_TENANT_ID: &str = "dev";
+
+/// Request timeout when fetching the live tenant list from the
+/// registry. Kept short — if the registry is slow we'd rather fall
+/// back to env-configured ids and finish the tick than block the
+/// scheduler loop.
+const REGISTRY_FETCH_TIMEOUT_SECS: u64 = 5;
+
 pub async fn start_scheduler(agent: &ComplianceAgent) -> Result<(), AgentError> {
     let sched = JobScheduler::new()
         .await
@@ -18,7 +31,14 @@ pub async fn start_scheduler(agent: &ComplianceAgent) -> Result<(), AgentError>
         let agent = scan_agent.clone();
         Box::pin(async move {
             tracing::info!("Scheduled scan triggered");
-            scan_all_repos(&agent).await;
+            let tenants = scheduler_tenants(&agent).await;
+            tracing::debug!(
+                tenant_count = tenants.len(),
+                "Scheduled scan: tenants resolved"
+            );
+            for tenant_id in tenants {
+                scan_all_repos(&agent, &tenant_id).await;
+            }
         })
     })
     .map_err(|e| AgentError::Scheduler(format!("Failed to create scan job: {e}")))?;
@@ -34,7 +54,14 @@ pub async fn start_scheduler(agent: &ComplianceAgent) -> Result<(), AgentError>
         let agent = cve_agent.clone();
         Box::pin(async move {
             tracing::info!("CVE monitor triggered");
-            monitor_cves(&agent).await;
+            let tenants = scheduler_tenants(&agent).await;
+            tracing::debug!(
+                tenant_count = tenants.len(),
+                "CVE monitor: tenants resolved"
+            );
+            for tenant_id in tenants {
+                monitor_cves(&agent, &tenant_id).await;
+            }
         })
     })
     .map_err(|e| AgentError::Scheduler(format!("Failed to create CVE monitor job: {e}")))?;
@@ -48,8 +75,14 @@ pub async fn start_scheduler(agent: &ComplianceAgent) -> Result<(), AgentError>
         .await
         .map_err(|e| AgentError::Scheduler(format!("Failed to start scheduler: {e}")))?;
 
+    let tenants = scheduler_tenants(agent).await;
+    let source = if agent.config.tenant_registry_url.is_some() {
+        "tenant-registry (env fallback)"
+    } else {
+        "env (SCHEDULER_TENANT_IDS)"
+    };
     tracing::info!(
-        "Scheduler started: scans='{}', CVE monitor='{}'",
+        "Scheduler started: scans='{}', CVE monitor='{}', tenant source={source}, tenants={tenants:?}",
         agent.config.scan_schedule,
         agent.config.cve_monitor_schedule,
     );
@@ -60,46 +93,382 @@ pub async fn start_scheduler(agent: &ComplianceAgent) -> Result<(), AgentError>
     }
 }
 
-async fn scan_all_repos(agent: &ComplianceAgent) {
-    use futures_util::StreamExt;
-
-    let cursor = match agent.db.repositories().find(doc! {}).await {
-        Ok(c) => c,
-        Err(e) => {
-            tracing::error!("Failed to list repos for scheduled scan: {e}");
-            return;
+/// Tenants the scheduler iterates each tick.
+///
+/// Resolution order:
+/// 1. **Tenant registry** at `agent.config.tenant_registry_url`
+///    (`GET /v1/tenants`). Fresh on every tick — picks up newly
+///    provisioned tenants without an agent restart.
+/// 2. **`SCHEDULER_TENANT_IDS`** env (comma-separated) — fallback when
+///    the registry is unreachable, the response is malformed, or no
+///    registry URL is configured.
+/// 3. **`DEFAULT_SCHEDULER_TENANT_ID`** (`"dev"`) — last-ditch fallback
+///    so the scheduler keeps doing something useful in dev.
+///
+/// We never panic out of this function — the scheduler must keep
+/// firing even if the registry is offline.
+async fn scheduler_tenants(agent: &ComplianceAgent) -> Vec<String> {
+    if let Some(url) = agent.config.tenant_registry_url.as_deref() {
+        match fetch_tenants_from_registry(&agent.http, url).await {
+            Ok(v) if !v.is_empty() => return v,
+            Ok(_) => {
+                tracing::warn!("tenant-registry returned empty list; falling back to env");
+            }
+            Err(e) => {
+                tracing::warn!(
+                    url = %url,
+                    error = %e,
+                    "tenant-registry fetch failed; falling back to env"
+                );
+            }
         }
-    };
+    }
+    tenants_from_env()
+}
 
-    let repos: Vec<_> = cursor.filter_map(|r| async { r.ok() }).collect().await;
+fn tenants_from_env() -> Vec<String> {
+    std::env::var("SCHEDULER_TENANT_IDS")
+        .ok()
+        .map(|s| {
+            s.split(',')
+                .map(str::trim)
+                .filter(|s| !s.is_empty())
+                .map(String::from)
+                .collect::<Vec<_>>()
+        })
+        .filter(|v| !v.is_empty())
+        .unwrap_or_else(|| vec![DEFAULT_SCHEDULER_TENANT_ID.to_string()])
+}
 
-    for repo in repos {
-        let repo_id = repo.id.map(|id| id.to_hex()).unwrap_or_default();
-        if let Err(e) = agent.run_scan(&repo_id, ScanTrigger::Scheduled).await {
-            tracing::error!("Scheduled scan failed for {}: {e}", repo.name);
+/// Shape we accept from the registry. Liberal in what we accept:
+/// the registry can return any field shape as long as either `id` or
+/// `tenant_id` is present. Other fields are ignored.
+#[derive(serde::Deserialize)]
+struct RegistryTenant {
+    #[serde(alias = "tenant_id")]
+    id: String,
+    /// Filter out non-running tenants if status is present. Missing
+    /// status defaults to "active" so older registry deployments keep
+    /// working.
+    #[serde(default = "default_status")]
+    status: String,
+}
+
+fn default_status() -> String {
+    "active".to_string()
+}
+
+#[derive(serde::Deserialize)]
+struct RegistryListResponse {
+    data: Vec<RegistryTenant>,
+}
+
+async fn fetch_tenants_from_registry(
+    http: &reqwest::Client,
+    base_url: &str,
+) -> Result<Vec<String>, String> {
+    let url = format!("{}/v1/tenants", base_url.trim_end_matches('/'));
+    let resp = http
+        .get(&url)
+        .timeout(std::time::Duration::from_secs(REGISTRY_FETCH_TIMEOUT_SECS))
+        .send()
+        .await
+        .map_err(|e| format!("request failed: {e}"))?;
+    if !resp.status().is_success() {
+        return Err(format!("registry returned {}", resp.status()));
+    }
+    let body: RegistryListResponse = resp
+        .json()
+        .await
+        .map_err(|e| format!("invalid JSON: {e}"))?;
+    Ok(filter_active(body.data))
+}
+
+/// Frozen/Archived tenants don't need scheduled scans; the M7.1
+/// status gate would 402/410 anyway. Skip them so we don't waste
+/// cycles. Active / trial / demo / anything-else-unknown all run.
+fn filter_active(rows: Vec<RegistryTenant>) -> Vec<String> {
+    rows.into_iter()
+        .filter(|t| !matches!(t.status.as_str(), "frozen" | "archived"))
+        .map(|t| t.id)
+        .collect()
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    fn tenant(id: &str, status: &str) -> RegistryTenant {
+        RegistryTenant {
+            id: id.to_string(),
+            status: status.to_string(),
+        }
+    }
+
+    #[test]
+    fn filter_active_keeps_running_skips_frozen_archived() {
+        let rows = vec![
+            tenant("a", "active"),
+            tenant("b", "trial"),
+            tenant("c", "demo"),
+            tenant("d", "frozen"),
+            tenant("e", "archived"),
+            tenant("f", "weird-but-not-known-dead"),
+        ];
+        let out = filter_active(rows);
+        assert_eq!(out, vec!["a", "b", "c", "f"]);
+    }
+
+    #[test]
+    fn deserialize_registry_response_accepts_id_or_tenant_id() {
+        let body = r#"{"data":[
+            {"id":"a","status":"active"},
+            {"tenant_id":"b","status":"trial"},
+            {"id":"c"}
+        ]}"#;
+        let parsed: RegistryListResponse = serde_json::from_str(body).unwrap();
+        assert_eq!(parsed.data.len(), 3);
+        assert_eq!(parsed.data[0].id, "a");
+        assert_eq!(parsed.data[1].id, "b");
+        assert_eq!(parsed.data[2].id, "c");
+        // Default status for the third entry should be "active"
+        assert_eq!(parsed.data[2].status, "active");
+    }
+
+    /// Combined into a single test: cargo runs tests in parallel and
+    /// env vars are process-global, so two separate tests touching
+    /// `SCHEDULER_TENANT_IDS` race each other. Doing both checks in
+    /// one test keeps them in a deterministic order.
+    #[test]
+    fn tenants_from_env_resolution() {
+        std::env::remove_var("SCHEDULER_TENANT_IDS");
+        assert_eq!(
+            tenants_from_env(),
+            vec![DEFAULT_SCHEDULER_TENANT_ID.to_string()],
+            "unset → default"
+        );
+
+        std::env::set_var("SCHEDULER_TENANT_IDS", "acme, globex ,,hello");
+        let out = tenants_from_env();
+        std::env::remove_var("SCHEDULER_TENANT_IDS");
+        assert_eq!(
+            out,
+            vec!["acme", "globex", "hello"],
+            "splits + trims + drops empty"
+        );
+
+        std::env::set_var("SCHEDULER_TENANT_IDS", "");
+        let out = tenants_from_env();
+        std::env::remove_var("SCHEDULER_TENANT_IDS");
+        assert_eq!(
+            out,
+            vec![DEFAULT_SCHEDULER_TENANT_ID.to_string()],
+            "empty → default"
+        );
+    }
+}
+
+/// Resolve the per-tenant database. Logs and returns `None` on failure
+/// so the loop in the caller can continue with other tenants.
+async fn tenant_db(agent: &ComplianceAgent, tenant_id: &str) -> Option<Database> {
+    match agent.db_pool.for_tenant_id(tenant_id).await {
+        Ok(db) => Some(db),
+        Err(e) => {
+            tracing::error!("Scheduler: cannot open tenant database '{tenant_id}': {e}");
+            None
         }
     }
 }
 
-async fn monitor_cves(agent: &ComplianceAgent) {
+async fn scan_all_repos(agent: &ComplianceAgent, tenant_id: &str) {
     use futures_util::StreamExt;
 
-    // Re-scan all SBOM entries for new CVEs
-    let cursor = match agent.db.sbom_entries().find(doc! {}).await {
+    let db = match tenant_db(agent, tenant_id).await {
+        Some(db) => db,
+        None => return,
+    };
+
+    let cursor = match db.onboarded_targets().find(doc! {}).await {
         Ok(c) => c,
         Err(e) => {
-            tracing::error!("Failed to list SBOM entries for CVE monitoring: {e}");
+            tracing::error!("Failed to list targets for tenant '{tenant_id}': {e}");
             return;
         }
     };
 
-    let entries: Vec<_> = cursor.filter_map(|r| async { r.ok() }).collect().await;
+    let targets: Vec<_> = cursor.filter_map(|r| async { r.ok() }).collect().await;
 
+    for target in targets {
+        let target_id = target.id.map(|id| id.to_hex()).unwrap_or_default();
+        if let Err(e) = agent
+            .run_target_scan(tenant_id, &target_id, ScanTrigger::Scheduled)
+            .await
+        {
+            tracing::error!(
+                "Scheduled scan failed for {} (tenant '{tenant_id}'): {e}",
+                target.name
+            );
+        }
+    }
+}
+
+async fn monitor_cves(agent: &ComplianceAgent, tenant_id: &str) {
+    use compliance_core::models::notification::{parse_severity, CveNotification};
+    use compliance_core::models::SbomEntry;
+    use futures_util::StreamExt;
+
+    let db = match tenant_db(agent, tenant_id).await {
+        Some(db) => db,
+        None => return,
+    };
+
+    // Fetch all SBOM entries grouped by repo
+    let cursor = match db.sbom_entries().find(doc! {}).await {
+        Ok(c) => c,
+        Err(e) => {
+            tracing::error!("CVE monitor: failed to list SBOM entries for '{tenant_id}': {e}");
+            return;
+        }
+    };
+    let entries: Vec<SbomEntry> = cursor.filter_map(|r| async { r.ok() }).collect().await;
     if entries.is_empty() {
+        tracing::debug!("CVE monitor: no SBOM entries for tenant '{tenant_id}', skipping");
         return;
     }
 
-    tracing::info!("CVE monitor: checking {} dependencies", entries.len());
-    // The actual CVE checking is handled by the CveScanner in the pipeline
-    // This is a simplified version that just logs the activity
+    tracing::info!(
+        "CVE monitor: checking {} dependencies for new CVEs (tenant '{tenant_id}')",
+        entries.len()
+    );
+
+    // Build a repo_id → repo_name lookup
+    let repo_ids: std::collections::HashSet<String> =
+        entries.iter().map(|e| e.repo_id.clone()).collect();
+    let mut repo_names: std::collections::HashMap<String, String> =
+        std::collections::HashMap::new();
+    for rid in &repo_ids {
+        if let Ok(oid) = mongodb::bson::oid::ObjectId::parse_str(rid) {
+            if let Ok(Some(repo)) = db.repositories().find_one(doc! { "_id": oid }).await {
+                repo_names.insert(rid.clone(), repo.name.clone());
+            }
+        }
+    }
+
+    // Use the existing CveScanner to query OSV.dev
+    let nvd_key = agent.config.nvd_api_key.as_ref().map(|k| {
+        use secrecy::ExposeSecret;
+        k.expose_secret().to_string()
+    });
+    let scanner = crate::pipeline::cve::CveScanner::new(
+        agent.http.clone(),
+        agent.config.searxng_url.clone(),
+        nvd_key,
+    );
+
+    // Group entries by repo for scanning
+    let mut entries_by_repo: std::collections::HashMap<String, Vec<SbomEntry>> =
+        std::collections::HashMap::new();
+    for entry in entries {
+        entries_by_repo
+            .entry(entry.repo_id.clone())
+            .or_default()
+            .push(entry);
+    }
+
+    let mut new_notifications = 0u32;
+
+    for (repo_id, mut repo_entries) in entries_by_repo {
+        let repo_name = repo_names
+            .get(&repo_id)
+            .cloned()
+            .unwrap_or_else(|| repo_id.clone());
+
+        // Scan dependencies for CVEs
+        let alerts = match scanner.scan_dependencies(&repo_id, &mut repo_entries).await {
+            Ok(a) => a,
+            Err(e) => {
+                tracing::warn!("CVE monitor: scan failed for {repo_name}: {e}");
+                continue;
+            }
+        };
+
+        // Upsert CVE alerts (existing logic)
+        for alert in &alerts {
+            let filter = doc! { "cve_id": &alert.cve_id, "repo_id": &alert.repo_id };
+            let update = doc! { "$setOnInsert": mongodb::bson::to_bson(alert).unwrap_or_default() };
+            let _ = db
+                .cve_alerts()
+                .update_one(filter, update)
+                .upsert(true)
+                .await;
+        }
+
+        // Update SBOM entries with discovered vulnerabilities
+        for entry in &repo_entries {
+            if entry.known_vulnerabilities.is_empty() {
+                continue;
+            }
+            if let Some(entry_id) = &entry.id {
+                let _ = db
+                    .sbom_entries()
+                    .update_one(
+                        doc! { "_id": entry_id },
+                        doc! { "$set": {
+                            "known_vulnerabilities": mongodb::bson::to_bson(&entry.known_vulnerabilities).unwrap_or_default(),
+                            "updated_at": mongodb::bson::DateTime::now(),
+                        }},
+                    )
+                    .await;
+            }
+        }
+
+        // Create notifications for NEW CVEs (dedup against existing notifications)
+        for alert in &alerts {
+            let filter = doc! {
+                "cve_id": &alert.cve_id,
+                "repo_id": &alert.repo_id,
+                "package_name": &alert.affected_package,
+                "package_version": &alert.affected_version,
+            };
+            // Only insert if not already exists (upsert with $setOnInsert)
+            let severity = parse_severity(alert.severity.as_deref(), alert.cvss_score);
+            let mut notification = CveNotification::new(
+                alert.cve_id.clone(),
+                repo_id.clone(),
+                repo_name.clone(),
+                alert.affected_package.clone(),
+                alert.affected_version.clone(),
+                severity,
+            );
+            notification.cvss_score = alert.cvss_score;
+            notification.summary = alert.summary.clone();
+            notification.url = Some(format!("https://osv.dev/vulnerability/{}", alert.cve_id));
+
+            let update = doc! {
+                "$setOnInsert": mongodb::bson::to_bson(&notification).unwrap_or_default()
+            };
+            match db
+                .cve_notifications()
+                .update_one(filter, update)
+                .upsert(true)
+                .await
+            {
+                Ok(result) if result.upserted_id.is_some() => {
+                    new_notifications += 1;
+                }
+                Err(e) => {
+                    tracing::warn!("CVE monitor: failed to create notification: {e}");
+                }
+                _ => {} // Already exists
+            }
+        }
+    }
+
+    if new_notifications > 0 {
+        tracing::info!(
+            "CVE monitor: created {new_notifications} new notification(s) for tenant '{tenant_id}'"
+        );
+    } else {
+        tracing::info!("CVE monitor: no new CVEs found for tenant '{tenant_id}'");
+    }
 }

compliance-agent/src/trackers/gitea.rs

@@ -98,7 +98,8 @@ impl IssueTracker for GiteaTracker {
             _ => "open",
         };
 
-        self.http
+        let resp = self
+            .http
             .patch(&url)
             .header(
                 "Authorization",
@@ -109,6 +110,14 @@ impl IssueTracker for GiteaTracker {
             .await
             .map_err(|e| CoreError::IssueTracker(format!("Gitea update issue failed: {e}")))?;
 
+        if !resp.status().is_success() {
+            let status = resp.status();
+            let text = resp.text().await.unwrap_or_default();
+            return Err(CoreError::IssueTracker(format!(
+                "Gitea update issue returned {status}: {text}"
+            )));
+        }
+
         Ok(())
     }
 
@@ -123,7 +132,8 @@ impl IssueTracker for GiteaTracker {
             "/repos/{owner}/{repo}/issues/{external_id}/comments"
         ));
 
-        self.http
+        let resp = self
+            .http
             .post(&url)
             .header(
                 "Authorization",
@@ -134,6 +144,14 @@ impl IssueTracker for GiteaTracker {
             .await
             .map_err(|e| CoreError::IssueTracker(format!("Gitea add comment failed: {e}")))?;
 
+        if !resp.status().is_success() {
+            let status = resp.status();
+            let text = resp.text().await.unwrap_or_default();
+            return Err(CoreError::IssueTracker(format!(
+                "Gitea add comment returned {status}: {text}"
+            )));
+        }
+
         Ok(())
     }
 
@@ -158,7 +176,8 @@ impl IssueTracker for GiteaTracker {
             })
             .collect();
 
-        self.http
+        let resp = self
+            .http
             .post(&url)
             .header(
                 "Authorization",
@@ -173,6 +192,48 @@ impl IssueTracker for GiteaTracker {
             .await
             .map_err(|e| CoreError::IssueTracker(format!("Gitea PR review failed: {e}")))?;
 
+        if !resp.status().is_success() {
+            let status = resp.status();
+            let text = resp.text().await.unwrap_or_default();
+
+            // If inline comments caused the failure, retry with just the summary body
+            if !comments.is_empty() {
+                tracing::warn!(
+                    "Gitea PR review with inline comments failed ({status}): {text}, retrying as plain comment"
+                );
+                let fallback_url = self.api_url(&format!(
+                    "/repos/{owner}/{repo}/issues/{pr_number}/comments"
+                ));
+                let fallback_resp = self
+                    .http
+                    .post(&fallback_url)
+                    .header(
+                        "Authorization",
+                        format!("token {}", self.token.expose_secret()),
+                    )
+                    .json(&serde_json::json!({ "body": body }))
+                    .send()
+                    .await
+                    .map_err(|e| {
+                        CoreError::IssueTracker(format!("Gitea PR comment fallback failed: {e}"))
+                    })?;
+
+                if !fallback_resp.status().is_success() {
+                    let fb_status = fallback_resp.status();
+                    let fb_text = fallback_resp.text().await.unwrap_or_default();
+                    return Err(CoreError::IssueTracker(format!(
+                        "Gitea PR comment fallback returned {fb_status}: {fb_text}"
+                    )));
+                }
+
+                return Ok(());
+            }
+
+            return Err(CoreError::IssueTracker(format!(
+                "Gitea PR review returned {status}: {text}"
+            )));
+        }
+
         Ok(())
     }
 

compliance-agent/src/webhooks/gitea.rs

@@ -14,24 +14,30 @@ type HmacSha256 = Hmac<Sha256>;
 
 pub async fn handle_gitea_webhook(
     Extension(agent): Extension<Arc<ComplianceAgent>>,
-    Path(repo_id): Path<String>,
+    Path((tenant_id, repo_id)): Path<(String, String)>,
     headers: HeaderMap,
     body: Bytes,
 ) -> StatusCode {
-    // Look up the repo to get its webhook secret
+    // Look up the repo in the tenant's database to get its webhook secret
     let oid = match mongodb::bson::oid::ObjectId::parse_str(&repo_id) {
         Ok(oid) => oid,
         Err(_) => return StatusCode::NOT_FOUND,
     };
-    let repo = match agent
-        .db
+    let db = match agent.db_pool.for_tenant_id(&tenant_id).await {
+        Ok(db) => db,
+        Err(e) => {
+            tracing::warn!("Gitea webhook: cannot open tenant database '{tenant_id}': {e}");
+            return StatusCode::NOT_FOUND;
+        }
+    };
+    let repo = match db
         .repositories()
         .find_one(mongodb::bson::doc! { "_id": oid })
         .await
     {
         Ok(Some(repo)) => repo,
         _ => {
-            tracing::warn!("Gitea webhook: repo {repo_id} not found");
+            tracing::warn!("Gitea webhook: repo {repo_id} not found in tenant '{tenant_id}'");
             return StatusCode::NOT_FOUND;
         }
     };
@@ -66,15 +72,21 @@ pub async fn handle_gitea_webhook(
         "push" => {
             let agent_clone = (*agent).clone();
             let repo_id = repo_id.clone();
+            let tenant_id = tenant_id.clone();
             tokio::spawn(async move {
-                tracing::info!("Gitea push webhook: triggering scan for {repo_id}");
-                if let Err(e) = agent_clone.run_scan(&repo_id, ScanTrigger::Webhook).await {
+                tracing::info!(
+                    "Gitea push webhook: triggering scan for {repo_id} in tenant {tenant_id}"
+                );
+                if let Err(e) = agent_clone
+                    .run_scan(&tenant_id, &repo_id, ScanTrigger::Webhook)
+                    .await
+                {
                     tracing::error!("Webhook-triggered scan failed: {e}");
                 }
             });
             StatusCode::OK
         }
-        "pull_request" => handle_pull_request(agent, &repo_id, &payload).await,
+        "pull_request" => handle_pull_request(agent, &tenant_id, &repo_id, &payload).await,
         _ => {
             tracing::debug!("Gitea webhook: ignoring event '{event}'");
             StatusCode::OK
@@ -84,6 +96,7 @@ pub async fn handle_gitea_webhook(
 
 async fn handle_pull_request(
     agent: Arc<ComplianceAgent>,
+    tenant_id: &str,
     repo_id: &str,
     payload: &serde_json::Value,
 ) -> StatusCode {
@@ -106,13 +119,14 @@ async fn handle_pull_request(
     }
 
     let repo_id = repo_id.to_string();
+    let tenant_id = tenant_id.to_string();
     let head_sha = head_sha.to_string();
     let base_sha = base_sha.to_string();
     let agent_clone = (*agent).clone();
     tokio::spawn(async move {
         tracing::info!("Gitea PR webhook: reviewing PR #{pr_number} on {repo_id}");
         if let Err(e) = agent_clone
-            .run_pr_review(&repo_id, pr_number, &base_sha, &head_sha)
+            .run_pr_review(&tenant_id, &repo_id, pr_number, &base_sha, &head_sha)
             .await
         {
             tracing::error!("PR review failed for #{pr_number}: {e}");

compliance-agent/src/webhooks/github.rs

@@ -14,24 +14,30 @@ type HmacSha256 = Hmac<Sha256>;
 
 pub async fn handle_github_webhook(
     Extension(agent): Extension<Arc<ComplianceAgent>>,
-    Path(repo_id): Path<String>,
+    Path((tenant_id, repo_id)): Path<(String, String)>,
     headers: HeaderMap,
     body: Bytes,
 ) -> StatusCode {
-    // Look up the repo to get its webhook secret
+    // Look up the repo in the tenant's database to get its webhook secret
     let oid = match mongodb::bson::oid::ObjectId::parse_str(&repo_id) {
         Ok(oid) => oid,
         Err(_) => return StatusCode::NOT_FOUND,
     };
-    let repo = match agent
-        .db
+    let db = match agent.db_pool.for_tenant_id(&tenant_id).await {
+        Ok(db) => db,
+        Err(e) => {
+            tracing::warn!("GitHub webhook: cannot open tenant database '{tenant_id}': {e}");
+            return StatusCode::NOT_FOUND;
+        }
+    };
+    let repo = match db
         .repositories()
         .find_one(mongodb::bson::doc! { "_id": oid })
         .await
     {
         Ok(Some(repo)) => repo,
         _ => {
-            tracing::warn!("GitHub webhook: repo {repo_id} not found");
+            tracing::warn!("GitHub webhook: repo {repo_id} not found in tenant '{tenant_id}'");
             return StatusCode::NOT_FOUND;
         }
     };
@@ -66,15 +72,21 @@ pub async fn handle_github_webhook(
         "push" => {
             let agent_clone = (*agent).clone();
             let repo_id = repo_id.clone();
+            let tenant_id = tenant_id.clone();
             tokio::spawn(async move {
-                tracing::info!("GitHub push webhook: triggering scan for {repo_id}");
-                if let Err(e) = agent_clone.run_scan(&repo_id, ScanTrigger::Webhook).await {
+                tracing::info!(
+                    "GitHub push webhook: triggering scan for {repo_id} in tenant {tenant_id}"
+                );
+                if let Err(e) = agent_clone
+                    .run_scan(&tenant_id, &repo_id, ScanTrigger::Webhook)
+                    .await
+                {
                     tracing::error!("Webhook-triggered scan failed: {e}");
                 }
             });
             StatusCode::OK
         }
-        "pull_request" => handle_pull_request(agent, &repo_id, &payload).await,
+        "pull_request" => handle_pull_request(agent, &tenant_id, &repo_id, &payload).await,
         _ => {
             tracing::debug!("GitHub webhook: ignoring event '{event}'");
             StatusCode::OK
@@ -84,6 +96,7 @@ pub async fn handle_github_webhook(
 
 async fn handle_pull_request(
     agent: Arc<ComplianceAgent>,
+    tenant_id: &str,
     repo_id: &str,
     payload: &serde_json::Value,
 ) -> StatusCode {
@@ -105,13 +118,14 @@ async fn handle_pull_request(
     }
 
     let repo_id = repo_id.to_string();
+    let tenant_id = tenant_id.to_string();
     let head_sha = head_sha.to_string();
     let base_sha = base_sha.to_string();
     let agent_clone = (*agent).clone();
     tokio::spawn(async move {
         tracing::info!("GitHub PR webhook: reviewing PR #{pr_number} on {repo_id}");
         if let Err(e) = agent_clone
-            .run_pr_review(&repo_id, pr_number, &base_sha, &head_sha)
+            .run_pr_review(&tenant_id, &repo_id, pr_number, &base_sha, &head_sha)
             .await
         {
             tracing::error!("PR review failed for #{pr_number}: {e}");

compliance-agent/src/webhooks/gitlab.rs

@@ -10,24 +10,30 @@ use crate::agent::ComplianceAgent;
 
 pub async fn handle_gitlab_webhook(
     Extension(agent): Extension<Arc<ComplianceAgent>>,
-    Path(repo_id): Path<String>,
+    Path((tenant_id, repo_id)): Path<(String, String)>,
     headers: HeaderMap,
     body: Bytes,
 ) -> StatusCode {
-    // Look up the repo to get its webhook secret
+    // Look up the repo in the tenant's database to get its webhook secret
     let oid = match mongodb::bson::oid::ObjectId::parse_str(&repo_id) {
         Ok(oid) => oid,
         Err(_) => return StatusCode::NOT_FOUND,
     };
-    let repo = match agent
-        .db
+    let db = match agent.db_pool.for_tenant_id(&tenant_id).await {
+        Ok(db) => db,
+        Err(e) => {
+            tracing::warn!("GitLab webhook: cannot open tenant database '{tenant_id}': {e}");
+            return StatusCode::NOT_FOUND;
+        }
+    };
+    let repo = match db
         .repositories()
         .find_one(mongodb::bson::doc! { "_id": oid })
         .await
     {
         Ok(Some(repo)) => repo,
         _ => {
-            tracing::warn!("GitLab webhook: repo {repo_id} not found");
+            tracing::warn!("GitLab webhook: repo {repo_id} not found in tenant '{tenant_id}'");
             return StatusCode::NOT_FOUND;
         }
     };
@@ -59,15 +65,21 @@ pub async fn handle_gitlab_webhook(
         "push" => {
             let agent_clone = (*agent).clone();
             let repo_id = repo_id.clone();
+            let tenant_id = tenant_id.clone();
             tokio::spawn(async move {
-                tracing::info!("GitLab push webhook: triggering scan for {repo_id}");
-                if let Err(e) = agent_clone.run_scan(&repo_id, ScanTrigger::Webhook).await {
+                tracing::info!(
+                    "GitLab push webhook: triggering scan for {repo_id} in tenant {tenant_id}"
+                );
+                if let Err(e) = agent_clone
+                    .run_scan(&tenant_id, &repo_id, ScanTrigger::Webhook)
+                    .await
+                {
                     tracing::error!("Webhook-triggered scan failed: {e}");
                 }
             });
             StatusCode::OK
         }
-        "merge_request" => handle_merge_request(agent, &repo_id, &payload).await,
+        "merge_request" => handle_merge_request(agent, &tenant_id, &repo_id, &payload).await,
         _ => {
             tracing::debug!("GitLab webhook: ignoring event '{event_type}'");
             StatusCode::OK
@@ -77,6 +89,7 @@ pub async fn handle_gitlab_webhook(
 
 async fn handle_merge_request(
     agent: Arc<ComplianceAgent>,
+    tenant_id: &str,
     repo_id: &str,
     payload: &serde_json::Value,
 ) -> StatusCode {
@@ -101,13 +114,14 @@ async fn handle_merge_request(
     }
 
     let repo_id = repo_id.to_string();
+    let tenant_id = tenant_id.to_string();
     let head_sha = head_sha.to_string();
     let base_sha = base_sha.to_string();
     let agent_clone = (*agent).clone();
     tokio::spawn(async move {
         tracing::info!("GitLab MR webhook: reviewing MR !{mr_iid} on {repo_id}");
         if let Err(e) = agent_clone
-            .run_pr_review(&repo_id, mr_iid, &base_sha, &head_sha)
+            .run_pr_review(&tenant_id, &repo_id, mr_iid, &base_sha, &head_sha)
             .await
         {
             tracing::error!("MR review failed for !{mr_iid}: {e}");

compliance-agent/src/webhooks/server.rs

@@ -9,17 +9,21 @@ use crate::webhooks::{gitea, github, gitlab};
 
 pub async fn start_webhook_server(agent: &ComplianceAgent) -> Result<(), AgentError> {
     let app = Router::new()
-        // Per-repo webhook URLs: /webhook/{platform}/{repo_id}
+        // Per-tenant per-repo webhook URLs: /webhook/{tenant_id}/{platform}/{repo_id}
+        // The tenant_id is resolved from the URL path because webhooks
+        // arrive without a JWT — they're authenticated via per-repo HMAC,
+        // not via the tenant gate. The dashboard surfaces the full URL
+        // including the tenant_id when the repo is registered.
         .route(
-            "/webhook/github/{repo_id}",
+            "/webhook/{tenant_id}/github/{repo_id}",
             post(github::handle_github_webhook),
         )
         .route(
-            "/webhook/gitlab/{repo_id}",
+            "/webhook/{tenant_id}/gitlab/{repo_id}",
             post(gitlab::handle_gitlab_webhook),
         )
         .route(
-            "/webhook/gitea/{repo_id}",
+            "/webhook/{tenant_id}/gitea/{repo_id}",
             post(gitea::handle_gitea_webhook),
         )
         .layer(Extension(Arc::new(agent.clone())));

compliance-agent/tests/common/mod.rs

@@ -1,3 +1,182 @@
-// Shared test helpers for compliance-agent integration tests.
+// Shared test harness for E2E / integration tests.
 //
-// Add database mocks, fixtures, and test utilities here.
+// Spins up the agent API server on a random port with an isolated test
+// database. Each test gets a fresh database that is dropped on cleanup.
+
+use std::sync::Arc;
+
+use compliance_agent::agent::ComplianceAgent;
+use compliance_agent::api;
+use compliance_agent::database::DatabasePool;
+use compliance_core::AgentConfig;
+use secrecy::SecretString;
+
+/// A running test server with a unique database.
+pub struct TestServer {
+    pub base_url: String,
+    pub client: reqwest::Client,
+    db_name: String,
+    mongodb_uri: String,
+}
+
+impl TestServer {
+    /// Start an agent API server on a random port with an isolated database.
+    pub async fn start() -> Self {
+        let mongodb_uri = std::env::var("TEST_MONGODB_URI")
+            .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+
+        // Unique db-name prefix per run. Must fit the pool's 30-char cap
+        // (`<prefix>_<32 hex>` <= 63), so use a 16-hex-char suffix.
+        let db_name = format!("t_{}", &uuid::Uuid::new_v4().simple().to_string()[..16]);
+
+        let db_pool = DatabasePool::connect(&mongodb_uri, &db_name)
+            .await
+            .expect("Failed to build DatabasePool");
+
+        let config = AgentConfig {
+            mongodb_uri: mongodb_uri.clone(),
+            mongodb_database: db_name.clone(),
+            litellm_url: std::env::var("TEST_LITELLM_URL")
+                .unwrap_or_else(|_| "http://localhost:4000".into()),
+            litellm_api_key: SecretString::from(String::new()),
+            litellm_model: "gpt-4o".into(),
+            litellm_embed_model: "text-embedding-3-small".into(),
+            agent_port: 0, // not used — we bind ourselves
+            scan_schedule: String::new(),
+            cve_monitor_schedule: String::new(),
+            git_clone_base_path: "/tmp/compliance-scanner-tests/repos".into(),
+            artifact_store_base_path: "/tmp/compliance-scanner-tests/artifacts".into(),
+            ssh_key_path: "/tmp/compliance-scanner-tests/ssh/id_ed25519".into(),
+            github_token: None,
+            github_webhook_secret: None,
+            gitlab_url: None,
+            gitlab_token: None,
+            gitlab_webhook_secret: None,
+            jira_url: None,
+            jira_email: None,
+            jira_api_token: None,
+            jira_project_key: None,
+            searxng_url: None,
+            nvd_api_key: None,
+            keycloak_url: None,
+            keycloak_realm: None,
+            keycloak_admin_username: None,
+            keycloak_admin_password: None,
+            pentest_verification_email: None,
+            pentest_imap_host: None,
+            pentest_imap_port: None,
+            pentest_imap_tls: false,
+            pentest_imap_username: None,
+            pentest_imap_password: None,
+            admin_api_token: None,
+            tenant_registry_url: None,
+            unified_pipeline: false,
+        };
+
+        let agent = ComplianceAgent::new(config, db_pool);
+
+        // Build the router with the agent extension. After M7.2-B every
+        // handler takes a TenantCtx extractor; without KC in the test
+        // harness, the dev-tenant injector mounts a synthetic context so
+        // tests run end-to-end against `<db_name>_dev`.
+        let app = api::routes::build_router()
+            .layer(axum::extract::Extension(Arc::new(agent)))
+            .layer(axum::middleware::from_fn(api::server::inject_dev_tenant))
+            .layer(tower_http::cors::CorsLayer::permissive());
+
+        // Bind to port 0 to get a random available port
+        let listener = tokio::net::TcpListener::bind("127.0.0.1:0")
+            .await
+            .expect("Failed to bind test server");
+        let port = listener.local_addr().expect("no local addr").port();
+
+        tokio::spawn(async move {
+            axum::serve(listener, app).await.ok();
+        });
+
+        let base_url = format!("http://127.0.0.1:{port}");
+        let client = reqwest::Client::builder()
+            .timeout(std::time::Duration::from_secs(30))
+            .build()
+            .expect("Failed to build HTTP client");
+
+        // Wait for server to be ready
+        for _ in 0..50 {
+            if client
+                .get(format!("{base_url}/api/v1/health"))
+                .send()
+                .await
+                .is_ok()
+            {
+                break;
+            }
+            tokio::time::sleep(std::time::Duration::from_millis(50)).await;
+        }
+
+        Self {
+            base_url,
+            client,
+            db_name,
+            mongodb_uri,
+        }
+    }
+
+    /// GET helper
+    pub async fn get(&self, path: &str) -> reqwest::Response {
+        self.client
+            .get(format!("{}{path}", self.base_url))
+            .send()
+            .await
+            .expect("GET request failed")
+    }
+
+    /// POST helper with JSON body
+    pub async fn post(&self, path: &str, body: &serde_json::Value) -> reqwest::Response {
+        self.client
+            .post(format!("{}{path}", self.base_url))
+            .json(body)
+            .send()
+            .await
+            .expect("POST request failed")
+    }
+
+    /// PATCH helper with JSON body
+    pub async fn patch(&self, path: &str, body: &serde_json::Value) -> reqwest::Response {
+        self.client
+            .patch(format!("{}{path}", self.base_url))
+            .json(body)
+            .send()
+            .await
+            .expect("PATCH request failed")
+    }
+
+    /// DELETE helper
+    pub async fn delete(&self, path: &str) -> reqwest::Response {
+        self.client
+            .delete(format!("{}{path}", self.base_url))
+            .send()
+            .await
+            .expect("DELETE request failed")
+    }
+
+    /// Get the unique database name for direct MongoDB access in tests.
+    pub fn db_name(&self) -> &str {
+        &self.db_name
+    }
+
+    /// Drop every per-tenant database belonging to this test run.
+    /// Post-M7.2-D the agent never opens a `db_name` directly —
+    /// data lives only in `<db_name>_<tenant>` per-tenant databases.
+    pub async fn cleanup(&self) {
+        if let Ok(client) = mongodb::Client::with_uri_str(&self.mongodb_uri).await {
+            if let Ok(names) = client.list_database_names().await {
+                let prefix = format!("{}_", self.db_name);
+                for name in names {
+                    if name.starts_with(&prefix) {
+                        client.database(&name).drop().await.ok();
+                    }
+                }
+            }
+        }
+    }
+}

compliance-agent/tests/e2e.rs

@@ -0,0 +1,7 @@
+// E2E test entry point.
+//
+// Run with:   cargo test -p compliance-agent --test e2e
+// Requires:   MongoDB running (set TEST_MONGODB_URI if not default)
+
+mod common;
+mod integration;

compliance-agent/tests/integration/api/cascade_delete.rs

@@ -0,0 +1,221 @@
+use crate::common::TestServer;
+use serde_json::json;
+
+/// Insert a DAST target directly into MongoDB linked to a repo.
+async fn insert_dast_target(server: &TestServer, repo_id: &str, name: &str) -> String {
+    let mongodb_uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let client = mongodb::Client::with_uri_str(&mongodb_uri).await.unwrap();
+    let db = client.database(&server.db_name());
+
+    let result = db
+        .collection::<mongodb::bson::Document>("dast_targets")
+        .insert_one(mongodb::bson::doc! {
+            "name": name,
+            "base_url": format!("https://{name}.example.com"),
+            "target_type": "webapp",
+            "repo_id": repo_id,
+            "rate_limit": 10,
+            "allow_destructive": false,
+            "created_at": mongodb::bson::DateTime::now(),
+        })
+        .await
+        .unwrap();
+
+    result.inserted_id.as_object_id().unwrap().to_hex()
+}
+
+/// Insert a pentest session linked to a target.
+async fn insert_pentest_session(server: &TestServer, target_id: &str, repo_id: &str) -> String {
+    let mongodb_uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let client = mongodb::Client::with_uri_str(&mongodb_uri).await.unwrap();
+    let db = client.database(&server.db_name());
+
+    let result = db
+        .collection::<mongodb::bson::Document>("pentest_sessions")
+        .insert_one(mongodb::bson::doc! {
+            "target_id": target_id,
+            "repo_id": repo_id,
+            "strategy": "comprehensive",
+            "status": "completed",
+            "findings_count": 1_i32,
+            "exploitable_count": 0_i32,
+            "created_at": mongodb::bson::DateTime::now(),
+        })
+        .await
+        .unwrap();
+
+    result.inserted_id.as_object_id().unwrap().to_hex()
+}
+
+/// Insert an attack chain node linked to a session.
+async fn insert_attack_node(server: &TestServer, session_id: &str) {
+    let mongodb_uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let client = mongodb::Client::with_uri_str(&mongodb_uri).await.unwrap();
+    let db = client.database(&server.db_name());
+
+    db.collection::<mongodb::bson::Document>("attack_chain_nodes")
+        .insert_one(mongodb::bson::doc! {
+            "session_id": session_id,
+            "node_id": "node-1",
+            "tool_name": "recon",
+            "status": "completed",
+            "created_at": mongodb::bson::DateTime::now(),
+        })
+        .await
+        .unwrap();
+}
+
+/// Insert a DAST finding linked to a target.
+async fn insert_dast_finding(server: &TestServer, target_id: &str, session_id: &str) {
+    let mongodb_uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let client = mongodb::Client::with_uri_str(&mongodb_uri).await.unwrap();
+    let db = client.database(&server.db_name());
+
+    db.collection::<mongodb::bson::Document>("dast_findings")
+        .insert_one(mongodb::bson::doc! {
+            "scan_run_id": "run-1",
+            "target_id": target_id,
+            "vuln_type": "xss",
+            "title": "Reflected XSS",
+            "description": "XSS in search param",
+            "severity": "high",
+            "endpoint": "https://example.com/search",
+            "method": "GET",
+            "exploitable": true,
+            "evidence": [],
+            "session_id": session_id,
+            "created_at": mongodb::bson::DateTime::now(),
+        })
+        .await
+        .unwrap();
+}
+
+/// Helper to count documents in a collection
+async fn count_docs(server: &TestServer, collection: &str) -> u64 {
+    let mongodb_uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let client = mongodb::Client::with_uri_str(&mongodb_uri).await.unwrap();
+    let db = client.database(&server.db_name());
+    db.collection::<mongodb::bson::Document>(collection)
+        .count_documents(mongodb::bson::doc! {})
+        .await
+        .unwrap()
+}
+
+#[tokio::test]
+async fn delete_repo_cascades_to_dast_and_pentest_data() {
+    let server = TestServer::start().await;
+
+    // Create a repo
+    let resp = server
+        .post(
+            "/api/v1/repositories",
+            &json!({
+                "name": "cascade-test",
+                "git_url": "https://github.com/example/cascade-test.git",
+            }),
+        )
+        .await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let repo_id = body["data"]["id"].as_str().unwrap().to_string();
+
+    // Insert DAST target linked to repo
+    let target_id = insert_dast_target(&server, &repo_id, "cascade-target").await;
+
+    // Insert pentest session linked to target
+    let session_id = insert_pentest_session(&server, &target_id, &repo_id).await;
+
+    // Insert downstream data
+    insert_attack_node(&server, &session_id).await;
+    insert_dast_finding(&server, &target_id, &session_id).await;
+
+    // Verify data exists
+    assert_eq!(count_docs(&server, "dast_targets").await, 1);
+    assert_eq!(count_docs(&server, "pentest_sessions").await, 1);
+    assert_eq!(count_docs(&server, "attack_chain_nodes").await, 1);
+    assert_eq!(count_docs(&server, "dast_findings").await, 1);
+
+    // Delete the repo
+    let resp = server
+        .delete(&format!("/api/v1/repositories/{repo_id}"))
+        .await;
+    assert_eq!(resp.status(), 200);
+
+    // All downstream data should be gone
+    assert_eq!(count_docs(&server, "dast_targets").await, 0);
+    assert_eq!(count_docs(&server, "pentest_sessions").await, 0);
+    assert_eq!(count_docs(&server, "attack_chain_nodes").await, 0);
+    assert_eq!(count_docs(&server, "dast_findings").await, 0);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn delete_repo_cascades_sast_findings_and_sbom() {
+    let server = TestServer::start().await;
+
+    // Create a repo
+    let resp = server
+        .post(
+            "/api/v1/repositories",
+            &json!({
+                "name": "sast-cascade",
+                "git_url": "https://github.com/example/sast-cascade.git",
+            }),
+        )
+        .await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let repo_id = body["data"]["id"].as_str().unwrap().to_string();
+
+    // Insert SAST finding and SBOM entry
+    let mongodb_uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let client = mongodb::Client::with_uri_str(&mongodb_uri).await.unwrap();
+    let db = client.database(&server.db_name());
+    let now = mongodb::bson::DateTime::now();
+
+    db.collection::<mongodb::bson::Document>("findings")
+        .insert_one(mongodb::bson::doc! {
+            "repo_id": &repo_id,
+            "fingerprint": "fp-test-1",
+            "scanner": "semgrep",
+            "scan_type": "sast",
+            "title": "SQL Injection",
+            "description": "desc",
+            "severity": "critical",
+            "status": "open",
+            "created_at": now,
+            "updated_at": now,
+        })
+        .await
+        .unwrap();
+
+    db.collection::<mongodb::bson::Document>("sbom_entries")
+        .insert_one(mongodb::bson::doc! {
+            "repo_id": &repo_id,
+            "name": "lodash",
+            "version": "4.17.20",
+            "package_manager": "npm",
+            "known_vulnerabilities": [],
+        })
+        .await
+        .unwrap();
+
+    assert_eq!(count_docs(&server, "findings").await, 1);
+    assert_eq!(count_docs(&server, "sbom_entries").await, 1);
+
+    // Delete repo
+    server
+        .delete(&format!("/api/v1/repositories/{repo_id}"))
+        .await;
+
+    // Both should be gone
+    assert_eq!(count_docs(&server, "findings").await, 0);
+    assert_eq!(count_docs(&server, "sbom_entries").await, 0);
+
+    server.cleanup().await;
+}

compliance-agent/tests/integration/api/dast.rs

@@ -0,0 +1,48 @@
+use crate::common::TestServer;
+use serde_json::json;
+
+#[tokio::test]
+async fn add_and_list_dast_targets() {
+    let server = TestServer::start().await;
+
+    // Initially empty
+    let resp = server.get("/api/v1/dast/targets").await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 0);
+
+    // Add a target
+    let resp = server
+        .post(
+            "/api/v1/dast/targets",
+            &json!({
+                "name": "test-app",
+                "base_url": "https://test-app.example.com",
+                "target_type": "webapp",
+            }),
+        )
+        .await;
+    assert_eq!(resp.status(), 200);
+
+    // List should return 1
+    let resp = server.get("/api/v1/dast/targets").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let targets = body["data"].as_array().unwrap();
+    assert_eq!(targets.len(), 1);
+    assert_eq!(targets[0]["name"], "test-app");
+    assert_eq!(targets[0]["base_url"], "https://test-app.example.com");
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn list_dast_findings_empty() {
+    let server = TestServer::start().await;
+
+    let resp = server.get("/api/v1/dast/findings").await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 0);
+
+    server.cleanup().await;
+}

compliance-agent/tests/integration/api/findings.rs

@@ -0,0 +1,144 @@
+use crate::common::TestServer;
+use serde_json::json;
+
+/// Helper: insert a finding directly via MongoDB for testing query endpoints.
+async fn insert_finding(server: &TestServer, repo_id: &str, title: &str, severity: &str) {
+    // We insert via the agent's DB by posting to the internal test path.
+    // Since there's no direct "create finding" API, we use MongoDB directly.
+    let mongodb_uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+
+    // Extract the database name from the server's unique DB
+    // We'll use the agent's internal DB through the stats endpoint to verify
+    let client = mongodb::Client::with_uri_str(&mongodb_uri).await.unwrap();
+
+    // Get the DB name from the test server by parsing the health response
+    // For now, we use a direct insert approach
+    let db = client.database(&server.db_name());
+
+    let now = mongodb::bson::DateTime::now();
+    db.collection::<mongodb::bson::Document>("findings")
+        .insert_one(mongodb::bson::doc! {
+            "repo_id": repo_id,
+            "fingerprint": format!("fp-{title}-{severity}"),
+            "scanner": "test-scanner",
+            "scan_type": "sast",
+            "title": title,
+            "description": format!("Test finding: {title}"),
+            "severity": severity,
+            "status": "open",
+            "created_at": now,
+            "updated_at": now,
+        })
+        .await
+        .unwrap();
+}
+
+#[tokio::test]
+async fn list_findings_empty() {
+    let server = TestServer::start().await;
+
+    let resp = server.get("/api/v1/findings").await;
+    assert_eq!(resp.status(), 200);
+
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 0);
+    assert_eq!(body["total"], 0);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn list_findings_with_data() {
+    let server = TestServer::start().await;
+
+    insert_finding(&server, "repo1", "SQL Injection", "critical").await;
+    insert_finding(&server, "repo1", "XSS", "high").await;
+    insert_finding(&server, "repo2", "Info Leak", "low").await;
+
+    let resp = server.get("/api/v1/findings").await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["total"], 3);
+
+    // Filter by severity
+    let resp = server.get("/api/v1/findings?severity=critical").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["total"], 1);
+    assert_eq!(body["data"][0]["title"], "SQL Injection");
+
+    // Filter by repo
+    let resp = server.get("/api/v1/findings?repo_id=repo1").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["total"], 2);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn update_finding_status() {
+    let server = TestServer::start().await;
+
+    insert_finding(&server, "repo1", "Test Bug", "medium").await;
+
+    // Get the finding ID
+    let resp = server.get("/api/v1/findings").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let finding_id = body["data"][0]["_id"]["$oid"].as_str().unwrap();
+
+    // Update status to resolved
+    let resp = server
+        .patch(
+            &format!("/api/v1/findings/{finding_id}/status"),
+            &json!({ "status": "resolved" }),
+        )
+        .await;
+    assert_eq!(resp.status(), 200);
+
+    // Verify it's updated
+    let resp = server.get(&format!("/api/v1/findings/{finding_id}")).await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"]["status"], "resolved");
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn bulk_update_finding_status() {
+    let server = TestServer::start().await;
+
+    insert_finding(&server, "repo1", "Bug A", "high").await;
+    insert_finding(&server, "repo1", "Bug B", "high").await;
+
+    // Get both finding IDs
+    let resp = server.get("/api/v1/findings").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let ids: Vec<String> = body["data"]
+        .as_array()
+        .unwrap()
+        .iter()
+        .map(|f| f["_id"]["$oid"].as_str().unwrap().to_string())
+        .collect();
+
+    // Bulk update
+    let resp = server
+        .patch(
+            "/api/v1/findings/bulk-status",
+            &json!({
+                "ids": ids,
+                "status": "false_positive"
+            }),
+        )
+        .await;
+    assert_eq!(resp.status(), 200);
+
+    // Verify both are updated
+    for id in &ids {
+        let resp = server.get(&format!("/api/v1/findings/{id}")).await;
+        let body: serde_json::Value = resp.json().await.unwrap();
+        assert_eq!(body["data"]["status"], "false_positive");
+    }
+
+    server.cleanup().await;
+}

compliance-agent/tests/integration/api/health.rs

@@ -0,0 +1,29 @@
+use crate::common::TestServer;
+
+#[tokio::test]
+async fn health_endpoint_returns_ok() {
+    let server = TestServer::start().await;
+
+    let resp = server.get("/api/v1/health").await;
+    assert_eq!(resp.status(), 200);
+
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["status"], "ok");
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn stats_overview_returns_zeroes_on_empty_db() {
+    let server = TestServer::start().await;
+
+    let resp = server.get("/api/v1/stats/overview").await;
+    assert_eq!(resp.status(), 200);
+
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let data = &body["data"];
+    assert_eq!(data["repositories"], 0);
+    assert_eq!(data["total_findings"], 0);
+
+    server.cleanup().await;
+}

compliance-agent/tests/integration/api/mod.rs

@@ -0,0 +1,7 @@
+mod cascade_delete;
+mod dast;
+mod findings;
+mod health;
+mod onboarding;
+mod repositories;
+mod stats;

compliance-agent/tests/integration/api/onboarding.rs

@@ -0,0 +1,115 @@
+use crate::common::TestServer;
+use serde_json::json;
+
+#[tokio::test]
+async fn create_list_and_applicable_scans() {
+    let server = TestServer::start().await;
+
+    // Initially empty.
+    let resp = server.get("/api/v1/targets").await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 0);
+
+    // Create a web-app target with a git repo + a live URL.
+    let resp = server
+        .post(
+            "/api/v1/targets",
+            &json!({
+                "name": "acme-web",
+                "target_type": "web_app",
+                "artifacts": [
+                    { "kind": "git_repo", "source_ref": "https://git/acme.git", "branch": "main" },
+                    { "kind": "live_url", "source_ref": "https://acme.example.com" }
+                ]
+            }),
+        )
+        .await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let id = body["data"]["_id"]["$oid"].as_str().unwrap().to_string();
+    assert!(!id.is_empty());
+    assert_eq!(body["data"]["artifacts"].as_array().unwrap().len(), 2);
+
+    // List returns it.
+    let resp = server.get("/api/v1/targets").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 1);
+
+    // Applicable scans: SAST present + DAST offered (live URL present), pentest supported.
+    let resp = server
+        .get(&format!("/api/v1/targets/{id}/applicable-scans"))
+        .await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let scans = body["data"]["scans"].as_array().unwrap();
+    let names: Vec<&str> = scans.iter().filter_map(|s| s["scan"].as_str()).collect();
+    assert!(names.contains(&"sast"));
+    assert!(names.contains(&"dast"));
+    assert_eq!(body["data"]["pentest_supported"], true);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn detect_classifies_a_plc_target() {
+    let server = TestServer::start().await;
+
+    // A PLC project artifact is a strong kind-based signal.
+    let resp = server
+        .post(
+            "/api/v1/targets",
+            &json!({
+                "name": "line-controller",
+                "target_type": "backend_service", // deliberately wrong; detect should suggest PLC
+                "artifacts": [
+                    { "kind": "plc_project", "source_ref": "line.xml", "plc_format": "plcopen_xml" }
+                ]
+            }),
+        )
+        .await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let id = body["data"]["_id"]["$oid"].as_str().unwrap().to_string();
+
+    let resp = server
+        .post(&format!("/api/v1/targets/{id}/detect"), &json!({}))
+        .await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"]["classification"]["suggested"], "plc_sps");
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn add_artifact_and_delete_target() {
+    let server = TestServer::start().await;
+
+    let resp = server
+        .post(
+            "/api/v1/targets",
+            &json!({ "name": "svc", "target_type": "backend_service" }),
+        )
+        .await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let id = body["data"]["_id"]["$oid"].as_str().unwrap().to_string();
+
+    // Attach a git repo.
+    let resp = server
+        .post(
+            &format!("/api/v1/targets/{id}/artifacts"),
+            &json!({ "kind": "git_repo", "source_ref": "https://git/svc.git" }),
+        )
+        .await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"]["artifacts"].as_array().unwrap().len(), 1);
+
+    // Delete it.
+    let resp = server.delete(&format!("/api/v1/targets/{id}")).await;
+    assert_eq!(resp.status(), 200);
+    let resp = server.get(&format!("/api/v1/targets/{id}")).await;
+    assert_eq!(resp.status(), 404);
+
+    server.cleanup().await;
+}

compliance-agent/tests/integration/api/repositories.rs

@@ -0,0 +1,110 @@
+use crate::common::TestServer;
+use serde_json::json;
+
+#[tokio::test]
+async fn add_and_list_repository() {
+    let server = TestServer::start().await;
+
+    // Initially empty
+    let resp = server.get("/api/v1/repositories").await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 0);
+
+    // Add a repository
+    let resp = server
+        .post(
+            "/api/v1/repositories",
+            &json!({
+                "name": "test-repo",
+                "git_url": "https://github.com/example/test-repo.git",
+            }),
+        )
+        .await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let repo_id = body["data"]["id"].as_str().unwrap().to_string();
+    assert!(!repo_id.is_empty());
+
+    // List should now return 1
+    let resp = server.get("/api/v1/repositories").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let repos = body["data"].as_array().unwrap();
+    assert_eq!(repos.len(), 1);
+    assert_eq!(repos[0]["name"], "test-repo");
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn add_duplicate_repository_fails() {
+    let server = TestServer::start().await;
+
+    let payload = json!({
+        "name": "dup-repo",
+        "git_url": "https://github.com/example/dup-repo.git",
+    });
+
+    // First add succeeds
+    let resp = server.post("/api/v1/repositories", &payload).await;
+    assert_eq!(resp.status(), 200);
+
+    // Second add with same git_url should fail (unique index)
+    let resp = server.post("/api/v1/repositories", &payload).await;
+    assert_ne!(resp.status(), 200);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn delete_repository() {
+    let server = TestServer::start().await;
+
+    // Add a repo
+    let resp = server
+        .post(
+            "/api/v1/repositories",
+            &json!({
+                "name": "to-delete",
+                "git_url": "https://github.com/example/to-delete.git",
+            }),
+        )
+        .await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let repo_id = body["data"]["id"].as_str().unwrap();
+
+    // Delete it
+    let resp = server
+        .delete(&format!("/api/v1/repositories/{repo_id}"))
+        .await;
+    assert_eq!(resp.status(), 200);
+
+    // List should be empty again
+    let resp = server.get("/api/v1/repositories").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 0);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn delete_nonexistent_repository_returns_404() {
+    let server = TestServer::start().await;
+
+    let resp = server
+        .delete("/api/v1/repositories/000000000000000000000000")
+        .await;
+    assert_eq!(resp.status(), 404);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn delete_invalid_id_returns_400() {
+    let server = TestServer::start().await;
+
+    let resp = server.delete("/api/v1/repositories/not-a-valid-id").await;
+    assert_eq!(resp.status(), 400);
+
+    server.cleanup().await;
+}

compliance-agent/tests/integration/api/stats.rs

@@ -0,0 +1,111 @@
+use crate::common::TestServer;
+use serde_json::json;
+
+#[tokio::test]
+async fn stats_overview_reflects_inserted_data() {
+    let server = TestServer::start().await;
+
+    // Add a repo
+    server
+        .post(
+            "/api/v1/repositories",
+            &json!({
+                "name": "stats-repo",
+                "git_url": "https://github.com/example/stats-repo.git",
+            }),
+        )
+        .await;
+
+    // Insert findings directly
+    let mongodb_uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let client = mongodb::Client::with_uri_str(&mongodb_uri).await.unwrap();
+    let db = client.database(&server.db_name());
+    let now = mongodb::bson::DateTime::now();
+
+    for (title, severity) in [
+        ("Critical Bug", "critical"),
+        ("High Bug", "high"),
+        ("Medium Bug", "medium"),
+        ("Low Bug", "low"),
+    ] {
+        db.collection::<mongodb::bson::Document>("findings")
+            .insert_one(mongodb::bson::doc! {
+                "repo_id": "test-repo-id",
+                "fingerprint": format!("fp-{title}"),
+                "scanner": "test",
+                "scan_type": "sast",
+                "title": title,
+                "description": "desc",
+                "severity": severity,
+                "status": "open",
+                "created_at": now,
+                "updated_at": now,
+            })
+            .await
+            .unwrap();
+    }
+
+    let resp = server.get("/api/v1/stats/overview").await;
+    assert_eq!(resp.status(), 200);
+
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let data = &body["data"];
+    assert_eq!(data["repositories"], 1);
+    assert_eq!(data["total_findings"], 4);
+    assert_eq!(data["critical"], 1);
+    assert_eq!(data["high"], 1);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn stats_update_after_finding_status_change() {
+    let server = TestServer::start().await;
+
+    // Insert a finding
+    let mongodb_uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let client = mongodb::Client::with_uri_str(&mongodb_uri).await.unwrap();
+    let db = client.database(&server.db_name());
+    let now = mongodb::bson::DateTime::now();
+
+    let result = db
+        .collection::<mongodb::bson::Document>("findings")
+        .insert_one(mongodb::bson::doc! {
+            "repo_id": "repo-1",
+            "fingerprint": "fp-stats-test",
+            "scanner": "test",
+            "scan_type": "sast",
+            "title": "Stats Test Finding",
+            "description": "desc",
+            "severity": "high",
+            "status": "open",
+            "created_at": now,
+            "updated_at": now,
+        })
+        .await
+        .unwrap();
+    let finding_id = result.inserted_id.as_object_id().unwrap().to_hex();
+
+    // Stats should show 1 finding
+    let resp = server.get("/api/v1/stats/overview").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"]["total_findings"], 1);
+
+    // Mark it as resolved
+    server
+        .patch(
+            &format!("/api/v1/findings/{finding_id}/status"),
+            &json!({ "status": "resolved" }),
+        )
+        .await;
+
+    // The finding still exists (status changed, not deleted)
+    let resp = server.get("/api/v1/stats/overview").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    // total_findings counts all findings regardless of status
+    assert_eq!(body["data"]["total_findings"], 1);
+
+    server.cleanup().await;
+}

compliance-agent/tests/integration/migration.rs

@@ -0,0 +1,156 @@
+// Integration tests for the onboarding backfill migration.
+//
+// Requires MongoDB (set TEST_MONGODB_URI if not at the default).
+// Not run in CI (which is `--lib` only) — run locally:
+//   cargo test -p compliance-agent --test e2e migration
+
+use compliance_agent::database::{Database, DatabasePool};
+use compliance_agent::migrate::onboarding;
+use compliance_core::models::{
+    ArtifactKind, DastTarget, DastTargetType, TargetType, TrackedRepository,
+};
+use mongodb::bson::{doc, Document};
+
+async fn fresh_db() -> (DatabasePool, String, Database) {
+    let uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    // Prefix must fit the pool's 30-char cap (`<prefix>_<32 hex>` <= 63).
+    let prefix = format!("t_{}", &uuid::Uuid::new_v4().simple().to_string()[..16]);
+    let pool = DatabasePool::connect(&uri, &prefix)
+        .await
+        .expect("connect mongo");
+    let db = pool.for_tenant_id("t1").await.expect("tenant db");
+    (pool, prefix, db)
+}
+
+async fn cleanup(pool: &DatabasePool, prefix: &str) {
+    if let Ok(names) = pool.client().list_database_names().await {
+        for n in names {
+            if n.starts_with(prefix) {
+                pool.client().database(&n).drop().await.ok();
+            }
+        }
+    }
+}
+
+#[tokio::test]
+async fn backfill_folds_relinks_is_idempotent_and_reversible() {
+    let (pool, prefix, db) = fresh_db().await;
+
+    // Seed a repo.
+    let repo = TrackedRepository::new("acme".into(), "https://git/acme.git".into());
+    let repo_id = db
+        .repositories()
+        .insert_one(repo)
+        .await
+        .expect("insert repo")
+        .inserted_id
+        .as_object_id()
+        .expect("repo oid");
+
+    // A DAST target linked to the repo (folds + promotes to WebApp + relinks).
+    let mut linked = DastTarget::new(
+        "acme-web".into(),
+        "https://acme.example.com".into(),
+        DastTargetType::WebApp,
+    );
+    linked.repo_id = Some(repo_id.to_hex());
+    let linked_id = db
+        .dast_targets()
+        .insert_one(linked)
+        .await
+        .expect("insert linked dast")
+        .inserted_id
+        .as_object_id()
+        .expect("linked oid");
+
+    // A repo-less DAST target (standalone).
+    let standalone = DastTarget::new(
+        "acme-api".into(),
+        "https://api.acme.com".into(),
+        DastTargetType::RestApi,
+    );
+    let standalone_id = db
+        .dast_targets()
+        .insert_one(standalone)
+        .await
+        .expect("insert standalone dast")
+        .inserted_id
+        .as_object_id()
+        .expect("standalone oid");
+
+    // A DAST scan run pointing at the linked target — should be relinked to the repo.
+    db.collection_named::<Document>("dast_scan_runs")
+        .insert_one(doc! { "target_id": linked_id.to_hex(), "status": "completed" })
+        .await
+        .expect("insert dast run");
+
+    // --- Backfill ---
+    assert!(!onboarding::already_applied(&db).await.unwrap());
+    let report = onboarding::backfill_onboarded_targets(&db, false)
+        .await
+        .expect("backfill");
+    assert_eq!(report.repos_migrated, 1);
+    assert_eq!(report.dast_targets_folded, 1);
+    assert_eq!(report.dast_targets_standalone, 1);
+    assert!(onboarding::already_applied(&db).await.unwrap());
+
+    // Repo target: preserved _id, has git + folded live-url, promoted to WebApp.
+    let repo_target = db
+        .onboarded_targets()
+        .find_one(doc! { "_id": repo_id })
+        .await
+        .unwrap()
+        .expect("repo target");
+    assert!(repo_target.has(ArtifactKind::GitRepo));
+    assert!(repo_target.has(ArtifactKind::LiveUrl));
+    assert_eq!(repo_target.target_type, TargetType::WebApp);
+
+    // Standalone target: preserved _id, live-url, backend service.
+    let standalone_target = db
+        .onboarded_targets()
+        .find_one(doc! { "_id": standalone_id })
+        .await
+        .unwrap()
+        .expect("standalone target");
+    assert!(standalone_target.has(ArtifactKind::LiveUrl));
+    assert_eq!(standalone_target.target_type, TargetType::BackendService);
+
+    // The DAST run was relinked from the old dast id to the repo (unified) id.
+    let run = db
+        .collection_named::<Document>("dast_scan_runs")
+        .find_one(doc! {})
+        .await
+        .unwrap()
+        .expect("run");
+    assert_eq!(run.get_str("target_id").unwrap(), repo_id.to_hex());
+
+    // --- Idempotent: re-run migrates nothing new ---
+    let again = onboarding::backfill_onboarded_targets(&db, false)
+        .await
+        .expect("backfill again");
+    assert_eq!(again.repos_migrated, 0);
+    assert_eq!(again.dast_targets_folded, 0);
+    assert_eq!(again.dast_targets_standalone, 0);
+    assert!(again.skipped_existing >= 2);
+
+    // --- Revert: onboarded targets gone, relink undone, marker cleared ---
+    onboarding::revert(&db).await.expect("revert");
+    assert_eq!(
+        db.onboarded_targets()
+            .count_documents(doc! {})
+            .await
+            .unwrap(),
+        0
+    );
+    let run_after = db
+        .collection_named::<Document>("dast_scan_runs")
+        .find_one(doc! {})
+        .await
+        .unwrap()
+        .expect("run");
+    assert_eq!(run_after.get_str("target_id").unwrap(), linked_id.to_hex());
+    assert!(!onboarding::already_applied(&db).await.unwrap());
+
+    cleanup(&pool, &prefix).await;
+}

compliance-agent/tests/integration/mod.rs

@@ -1,4 +1,10 @@
-// Integration tests for the compliance-agent crate.
+// E2E / Integration tests for the compliance-agent API.
 //
-// Add tests that exercise the full pipeline, API handlers,
-// and cross-module interactions here.
+// These tests require a running MongoDB instance. Set TEST_MONGODB_URI
+// if it's not at the default `mongodb://root:example@localhost:27017`.
+//
+// Run with:   cargo test -p compliance-agent --test e2e
+// Or nightly: (via CI with MongoDB service container)
+
+mod api;
+mod migration;

compliance-agent/tests/tenant_isolation.rs

@@ -0,0 +1,298 @@
+//! M7.2-A — `DatabasePool` isolation proof.
+//!
+//! Two `TenantContext`s, two databases, one client. Insert on A, query
+//! on B → empty. Insert on B, query on A → only A's docs. Proves that
+//! the per-tenant database split actually isolates at the driver level
+//! and not at "we hope we filter."
+//!
+//! Requires MongoDB. Set `TEST_MONGODB_URI` to override the default
+//! `mongodb://root:example@localhost:27017/?authSource=admin`.
+
+#![allow(clippy::expect_used, clippy::unwrap_used)]
+
+use compliance_agent::database::DatabasePool;
+use compliance_core::models::TrackedRepository;
+use compliance_core::{OrgRole, TenantContext, TenantStatus};
+use mongodb::bson::doc;
+
+fn ctx(tenant_id: &str, slug: &str) -> TenantContext {
+    TenantContext {
+        tenant_id: tenant_id.to_string(),
+        tenant_slug: slug.to_string(),
+        org_roles: vec![OrgRole::ItAdmin],
+        products: vec!["compliance-scanner".to_string()],
+        plan: "starter".to_string(),
+        status: TenantStatus::Active,
+        user_id: "u-1".to_string(),
+        user_name: None,
+    }
+}
+
+fn fixture_repo(name: &str, git_url: &str) -> TrackedRepository {
+    TrackedRepository {
+        id: None,
+        name: name.to_string(),
+        git_url: git_url.to_string(),
+        default_branch: "main".to_string(),
+        local_path: None,
+        scan_schedule: None,
+        webhook_enabled: false,
+        webhook_secret: None,
+        tracker_type: None,
+        tracker_owner: None,
+        tracker_repo: None,
+        tracker_token: None,
+        auth_token: None,
+        auth_username: None,
+        last_scanned_commit: None,
+        findings_count: 0,
+        created_at: chrono::Utc::now(),
+        updated_at: chrono::Utc::now(),
+    }
+}
+
+#[tokio::test]
+async fn pool_isolates_tenants_at_driver_level() {
+    let uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    // Unique per run so parallel test invocations don't collide. Kept
+    // short because Mongo caps db names at 63 bytes (prefix + tenant_id).
+    let prefix = format!("m72a_{}", short_id());
+
+    let pool = DatabasePool::connect(&uri, &prefix)
+        .await
+        .expect("Failed to connect to MongoDB — is it running?");
+
+    let acme = ctx("00000000-0000-0000-0000-00000000acme", "acme");
+    let globex = ctx("00000000-0000-0000-0000-0000globex000", "globex");
+
+    let acme_db = pool.for_tenant(&acme).await.expect("acme db");
+    let globex_db = pool.for_tenant(&globex).await.expect("globex db");
+
+    // Write distinct repos into each tenant's database.
+    acme_db
+        .repositories()
+        .insert_one(fixture_repo("acme-app", "git@example.com:acme/app.git"))
+        .await
+        .expect("insert acme");
+    globex_db
+        .repositories()
+        .insert_one(fixture_repo(
+            "globex-platform",
+            "git@example.com:globex/platform.git",
+        ))
+        .await
+        .expect("insert globex");
+
+    // The point of the whole exercise: acme can ONLY see acme's repo
+    // and globex can ONLY see globex's, with no filter doc anywhere
+    // because the isolation is at the database handle, not in the query.
+    let acme_seen = collect(&acme_db).await;
+    let globex_seen = collect(&globex_db).await;
+
+    assert_eq!(acme_seen.len(), 1, "acme should see exactly its own repo");
+    assert_eq!(acme_seen[0].name, "acme-app");
+    assert_eq!(
+        globex_seen.len(),
+        1,
+        "globex should see exactly its own repo"
+    );
+    assert_eq!(globex_seen[0].name, "globex-platform");
+
+    // Sanity: the two databases really are different by name.
+    let acme_db_name = pool.tenant_db_name(&acme.tenant_id);
+    let globex_db_name = pool.tenant_db_name(&globex.tenant_id);
+    assert_ne!(acme_db_name, globex_db_name);
+    assert!(acme_db_name.starts_with(&prefix));
+
+    // Cleanup — drop both per-tenant databases.
+    pool.client()
+        .database(&acme_db_name)
+        .drop()
+        .await
+        .expect("drop acme");
+    pool.client()
+        .database(&globex_db_name)
+        .drop()
+        .await
+        .expect("drop globex");
+}
+
+#[tokio::test]
+async fn for_tenant_is_idempotent_index_creation() {
+    let uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let prefix = format!("m72a_{}", short_id());
+    let pool = DatabasePool::connect(&uri, &prefix).await.expect("connect");
+
+    let acme = ctx("00000000-0000-0000-0000-00000000acme", "acme");
+
+    // Second call must not fail (ensure_indexes already ran, in-memory
+    // marker is set, Mongo's createIndex is idempotent by name anyway).
+    let _ = pool.for_tenant(&acme).await.expect("first call");
+    let _ = pool.for_tenant(&acme).await.expect("second call");
+    let _ = pool.for_tenant(&acme).await.expect("third call");
+
+    // Cleanup
+    let db_name = pool.tenant_db_name(&acme.tenant_id);
+    pool.client().database(&db_name).drop().await.expect("drop");
+}
+
+#[tokio::test]
+async fn tenant_db_name_sanitizes_unsafe_characters() {
+    let uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let pool = DatabasePool::connect(&uri, "m72a_sanitize")
+        .await
+        .expect("connect");
+
+    // Mongo db names cannot contain `/ \ . " $ <space> NUL`. The pool
+    // must rewrite these without exploding on connect.
+    let funky = "te/n.a\\nt$id\" with spaces";
+    let name = pool.tenant_db_name(funky);
+    for c in ['/', '\\', '.', '"', '$', ' '] {
+        assert!(
+            !name.contains(c),
+            "sanitized db name still contains {c:?}: {name}"
+        );
+    }
+}
+
+#[tokio::test]
+async fn admin_helpers_list_and_drop_tenant_dbs() {
+    let uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let prefix = format!("m72d_{}", short_id());
+    let pool = DatabasePool::connect(&uri, &prefix).await.expect("connect");
+
+    let acme = ctx("00000000-0000-0000-0000-00000000acme", "acme");
+    let globex = ctx("00000000-0000-0000-0000-0000globex000", "globex");
+
+    // Provision two tenants and write a doc into each so the databases
+    // actually materialize on the cluster (Mongo lazily creates DBs).
+    let acme_db = pool.for_tenant(&acme).await.expect("acme db");
+    let globex_db = pool.for_tenant(&globex).await.expect("globex db");
+    acme_db
+        .repositories()
+        .insert_one(fixture_repo("acme-app", "git@example.com:acme/app.git"))
+        .await
+        .expect("insert acme");
+    globex_db
+        .repositories()
+        .insert_one(fixture_repo("globex-app", "git@example.com:globex/app.git"))
+        .await
+        .expect("insert globex");
+
+    // list_tenant_db_names sees both, filtered by prefix
+    let names = pool.list_tenant_db_names().await.expect("list tenants");
+    let acme_name = pool.tenant_db_name(&acme.tenant_id);
+    let globex_name = pool.tenant_db_name(&globex.tenant_id);
+    assert!(
+        names.contains(&acme_name),
+        "expected {acme_name} in {names:?}"
+    );
+    assert!(
+        names.contains(&globex_name),
+        "expected {globex_name} in {names:?}"
+    );
+    for name in &names {
+        assert!(name.starts_with(&format!("{prefix}_")));
+    }
+
+    // drop_tenant removes acme's DB
+    pool.drop_tenant(&acme.tenant_id)
+        .await
+        .expect("drop acme tenant");
+    let after = pool
+        .list_tenant_db_names()
+        .await
+        .expect("list tenants after drop");
+    assert!(
+        !after.contains(&acme_name),
+        "acme should be gone after drop, got {after:?}"
+    );
+    assert!(
+        after.contains(&globex_name),
+        "globex should still be present, got {after:?}"
+    );
+
+    // Cleanup remaining
+    pool.drop_tenant(&globex.tenant_id)
+        .await
+        .expect("drop globex tenant");
+}
+
+#[tokio::test]
+async fn tenant_db_name_falls_back_to_hash_when_too_long() {
+    let uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    let pool = DatabasePool::connect(&uri, "m72a_long")
+        .await
+        .expect("connect");
+
+    // 100-byte tenant_id would overflow the 63-byte db-name cap with
+    // any reasonable prefix. The pool must hash it down.
+    let huge = "x".repeat(100);
+    let name = pool.tenant_db_name(&huge);
+    assert!(name.len() <= 63, "hashed name should fit: {name}");
+    assert!(name.starts_with("m72a_long_"));
+    // The hash suffix is 32 hex chars (16-byte SHA-256 truncation).
+    let suffix = name.trim_start_matches("m72a_long_");
+    assert_eq!(
+        suffix.len(),
+        32,
+        "expected 32-hex suffix (16-byte hash), got {suffix:?}"
+    );
+    assert!(suffix.chars().all(|c| c.is_ascii_hexdigit()));
+
+    // Stable: same input → same output.
+    assert_eq!(name, pool.tenant_db_name(&huge));
+
+    // Different inputs → different outputs (collision check on a tiny
+    // sample — full birthday-resistance is a proof not a test).
+    let huge2 = "y".repeat(100);
+    assert_ne!(pool.tenant_db_name(&huge), pool.tenant_db_name(&huge2));
+}
+
+#[tokio::test]
+async fn connect_rejects_overlong_db_prefix() {
+    let uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+
+    // MAX_PREFIX_LEN is 30 (= 63 - 1 - 32). A 31-char prefix MUST be
+    // rejected at construction so the hash-fallback path can never
+    // produce an over-long db name at runtime.
+    let too_long = "a".repeat(31);
+    let err = DatabasePool::connect(&uri, &too_long).await.unwrap_err();
+    let msg = format!("{err}");
+    assert!(
+        msg.contains("max is 30") || msg.contains(&too_long),
+        "error should explain the cap: {msg}"
+    );
+
+    // Exactly 30 chars is the inclusive bound — must succeed.
+    let just_right = "a".repeat(30);
+    let _ = DatabasePool::connect(&uri, &just_right)
+        .await
+        .expect("30-char prefix should be accepted");
+}
+
+/// Short UUID slug for keeping test prefixes well under Mongo's 63-byte
+/// db-name cap.
+fn short_id() -> String {
+    uuid::Uuid::new_v4().simple().to_string()[..8].to_string()
+}
+
+/// Drain a `repositories` find cursor on the given tenant database.
+async fn collect(db: &compliance_agent::database::Database) -> Vec<TrackedRepository> {
+    let mut cursor = db
+        .repositories()
+        .find(doc! {})
+        .await
+        .expect("find repositories");
+    let mut out = Vec::new();
+    while cursor.advance().await.expect("advance") {
+        out.push(cursor.deserialize_current().expect("deserialize"));
+    }
+    out
+}

compliance-agent/tests/tenant_status_middleware.rs

@@ -0,0 +1,122 @@
+//! M7.1 — integration tests for `compliance_core::auth::require_tenant_status`.
+//!
+//! Exercises the middleware end-to-end through an Axum router so we
+//! catch wiring bugs (extension propagation, method matching) that pure
+//! unit tests would miss.
+
+#![allow(clippy::expect_used, clippy::unwrap_used)]
+
+use axum::{
+    body::Body,
+    extract::Request,
+    http::{Method, StatusCode},
+    middleware::{from_fn, Next},
+    response::Response,
+    routing::{get, post},
+    Router,
+};
+use compliance_core::{auth::require_tenant_status, TenantContext, TenantStatus};
+use tower::ServiceExt;
+
+fn ctx_with(status: TenantStatus) -> TenantContext {
+    TenantContext {
+        tenant_id: "t-1".to_string(),
+        tenant_slug: "acme".to_string(),
+        org_roles: vec![],
+        products: vec![],
+        plan: "starter".to_string(),
+        status,
+        user_id: "u-1".to_string(),
+        user_name: None,
+    }
+}
+
+fn router_with_ctx(ctx: Option<TenantContext>) -> Router {
+    let injector = move |mut req: Request, next: Next| {
+        let ctx = ctx.clone();
+        async move {
+            if let Some(c) = ctx {
+                req.extensions_mut().insert(c);
+            }
+            next.run(req).await
+        }
+    };
+
+    Router::new()
+        .route("/r", get(|| async { "read" }))
+        .route("/w", post(|| async { "write" }))
+        .layer(from_fn(require_tenant_status))
+        .layer(from_fn(injector))
+}
+
+async fn call(router: Router, method: Method, path: &str) -> Response {
+    let req = Request::builder()
+        .method(method)
+        .uri(path)
+        .body(Body::empty())
+        .expect("request build");
+    router.oneshot(req).await.expect("oneshot")
+}
+
+#[tokio::test]
+async fn active_tenant_can_read_and_write() {
+    let r = router_with_ctx(Some(ctx_with(TenantStatus::Active)));
+    assert_eq!(
+        call(r.clone(), Method::GET, "/r").await.status(),
+        StatusCode::OK
+    );
+    assert_eq!(call(r, Method::POST, "/w").await.status(), StatusCode::OK);
+}
+
+#[tokio::test]
+async fn trial_tenant_can_read_and_write() {
+    let r = router_with_ctx(Some(ctx_with(TenantStatus::Trial)));
+    assert_eq!(
+        call(r.clone(), Method::GET, "/r").await.status(),
+        StatusCode::OK
+    );
+    assert_eq!(call(r, Method::POST, "/w").await.status(), StatusCode::OK);
+}
+
+#[tokio::test]
+async fn demo_tenant_can_read_and_write() {
+    let r = router_with_ctx(Some(ctx_with(TenantStatus::Demo)));
+    assert_eq!(
+        call(r.clone(), Method::GET, "/r").await.status(),
+        StatusCode::OK
+    );
+    assert_eq!(call(r, Method::POST, "/w").await.status(), StatusCode::OK);
+}
+
+#[tokio::test]
+async fn frozen_tenant_can_read_but_not_write() {
+    let r = router_with_ctx(Some(ctx_with(TenantStatus::Frozen)));
+    assert_eq!(
+        call(r.clone(), Method::GET, "/r").await.status(),
+        StatusCode::OK
+    );
+    assert_eq!(
+        call(r, Method::POST, "/w").await.status(),
+        StatusCode::PAYMENT_REQUIRED
+    );
+}
+
+#[tokio::test]
+async fn archived_tenant_is_gone_on_every_method() {
+    let r = router_with_ctx(Some(ctx_with(TenantStatus::Archived)));
+    assert_eq!(
+        call(r.clone(), Method::GET, "/r").await.status(),
+        StatusCode::GONE
+    );
+    assert_eq!(call(r, Method::POST, "/w").await.status(), StatusCode::GONE);
+}
+
+#[tokio::test]
+async fn no_context_passes_through() {
+    let r = router_with_ctx(None);
+    assert_eq!(
+        call(r.clone(), Method::GET, "/r").await.status(),
+        StatusCode::OK
+    );
+    assert_eq!(call(r, Method::POST, "/w").await.status(), StatusCode::OK);
+}

compliance-core/Cargo.toml

@@ -18,6 +18,15 @@ telemetry = [
     "dep:tracing-subscriber",
     "dep:tracing",
 ]
+# Pulls in the M7.1 Axum middleware + extractor. Consumers that don't
+# embed an HTTP server (e.g. the wasm dashboard frontend) leave it off.
+axum = [
+    "dep:axum",
+    "dep:jsonwebtoken",
+    "dep:reqwest",
+    "dep:tokio",
+    "dep:tracing",
+]
 
 [dependencies]
 serde = { workspace = true }
@@ -37,3 +46,7 @@ opentelemetry-appender-tracing = { version = "0.29", optional = true }
 tracing-opentelemetry = { version = "0.30", optional = true }
 tracing-subscriber = { workspace = true, optional = true }
 tracing = { workspace = true, optional = true }
+axum = { version = "0.8", optional = true }
+jsonwebtoken = { version = "9", optional = true }
+reqwest = { workspace = true, optional = true }
+tokio = { workspace = true, optional = true }

compliance-core/src/auth.rs

@@ -0,0 +1,398 @@
+//! M7.1 — JWT validation + tenant context propagation.
+//!
+//! `require_jwt_auth` validates a Bearer JWT against Keycloak's JWKS and
+//! attaches a [`TenantContext`] to the request extensions. Downstream
+//! middleware ([`require_tenant_status`]) and Axum extractors
+//! ([`crate::tenant_ctx::TenantCtx`]) read it from there.
+//!
+//! Skipped paths:
+//! * `/api/v1/health` — Kubernetes liveness; never authenticated.
+//!
+//! Failure modes:
+//! * No `JwksState` extension → pass-through (single-tenant dev mode).
+//! * Missing / malformed Bearer header → 401.
+//! * Signature / expiry invalid → 401.
+//! * Claims present but tenant_id missing → 401 (treated as a malformed
+//!   token; the realm must always issue tenant_id).
+
+use std::sync::Arc;
+
+use axum::{
+    extract::Request,
+    http::Method,
+    middleware::Next,
+    response::{IntoResponse, Response},
+};
+use jsonwebtoken::{decode, decode_header, jwk::JwkSet, DecodingKey, Validation};
+use reqwest::StatusCode;
+use serde::Deserialize;
+use tokio::sync::RwLock;
+
+use crate::{OrgRole, TenantContext, TenantStatus};
+
+/// Cached JWKS from Keycloak for token validation.
+#[derive(Clone)]
+pub struct JwksState {
+    pub jwks: Arc<RwLock<Option<JwkSet>>>,
+    pub jwks_url: String,
+}
+
+/// Raw shape of the JWT payload — matches the breakpilot-dev realm's
+/// protocol-mapper output. Missing fields default to "" / empty so a
+/// realm that hasn't been fully wired yet still validates.
+#[derive(Debug, Deserialize)]
+struct Claims {
+    sub: String,
+    #[serde(default)]
+    name: Option<String>,
+    #[serde(default)]
+    preferred_username: Option<String>,
+    #[serde(default)]
+    tenant_id: String,
+    #[serde(default)]
+    tenant_slug: String,
+    #[serde(default)]
+    org_roles: Vec<String>,
+    #[serde(default)]
+    products: Vec<String>,
+    #[serde(default)]
+    plan: String,
+    #[serde(default)]
+    tenant_status: Option<TenantStatus>,
+}
+
+const PUBLIC_ENDPOINTS: &[&str] = &["/api/v1/health"];
+
+/// Path prefixes that bypass JWT validation. The admin sub-router
+/// (`/api/v1/admin/*`) has its own static-bearer middleware and must
+/// not be routed through the customer-JWT path — a Keycloak token
+/// always carries a single tenant_id and would semantically conflict
+/// with cross-tenant admin operations.
+const PUBLIC_PREFIXES: &[&str] = &["/api/v1/admin/"];
+
+/// Middleware that validates Bearer JWT tokens against Keycloak's JWKS
+/// and attaches a `TenantContext` extension on success.
+///
+/// Skips validation for the health endpoint and any path under one of
+/// the [`PUBLIC_PREFIXES`]. If `JwksState` is not present (Keycloak
+/// not configured), requests pass through and downstream code must
+/// handle the missing context.
+pub async fn require_jwt_auth(mut request: Request, next: Next) -> Response {
+    let path = request.uri().path();
+
+    if PUBLIC_ENDPOINTS.contains(&path) || PUBLIC_PREFIXES.iter().any(|p| path.starts_with(p)) {
+        return next.run(request).await;
+    }
+
+    let jwks_state = match request.extensions().get::<JwksState>() {
+        Some(s) => s.clone(),
+        None => return next.run(request).await,
+    };
+
+    let auth_header = match request.headers().get("authorization") {
+        Some(h) => h,
+        None => return (StatusCode::UNAUTHORIZED, "Missing authorization header").into_response(),
+    };
+
+    let token = match auth_header.to_str() {
+        Ok(s) if s.starts_with("Bearer ") => &s[7..],
+        _ => return (StatusCode::UNAUTHORIZED, "Invalid authorization header").into_response(),
+    };
+
+    match validate_token(token, &jwks_state).await {
+        Ok(ctx) => {
+            request.extensions_mut().insert(ctx);
+            next.run(request).await
+        }
+        Err(e) => {
+            tracing::warn!("JWT validation failed: {e}");
+            (StatusCode::UNAUTHORIZED, "Invalid token").into_response()
+        }
+    }
+}
+
+/// Middleware that enforces the M7.1 `tenant_status` contract.
+///
+/// * `Active` / `Trial` / `Demo` — pass through.
+/// * `Frozen` — read-only after cancel / non-payment. Writes return 402.
+/// * `Archived` — data-retention window closed. Every request returns 410.
+///
+/// Pass-through when no `TenantContext` is present (single-tenant dev or
+/// the upstream JWT middleware ran without `JwksState`).
+pub async fn require_tenant_status(request: Request, next: Next) -> Response {
+    let ctx = match request.extensions().get::<TenantContext>() {
+        Some(c) => c.clone(),
+        None => return next.run(request).await,
+    };
+
+    if ctx.status.is_archived() {
+        return (
+            StatusCode::GONE,
+            "Tenant archived — data retention window closed",
+        )
+            .into_response();
+    }
+
+    if ctx.status.is_frozen() && is_write(request.method()) {
+        return (
+            StatusCode::PAYMENT_REQUIRED,
+            "Tenant frozen — read-only. Re-activate to resume writes.",
+        )
+            .into_response();
+    }
+
+    next.run(request).await
+}
+
+/// Treat anything other than GET/HEAD/OPTIONS as a write. Good enough for
+/// REST. The few exceptions (e.g. read-side POSTs) can opt out at the
+/// handler level once we have them.
+fn is_write(m: &Method) -> bool {
+    !matches!(m, &Method::GET | &Method::HEAD | &Method::OPTIONS)
+}
+
+async fn validate_token(token: &str, state: &JwksState) -> Result<TenantContext, String> {
+    let header = decode_header(token).map_err(|e| format!("failed to decode JWT header: {e}"))?;
+
+    let kid = header
+        .kid
+        .clone()
+        .ok_or_else(|| "JWT missing kid header".to_string())?;
+
+    // First try against whatever's currently cached. If the kid isn't
+    // there or the signature doesn't verify, the cached JWKS is most
+    // likely stale (KC rotated keys) — refresh once and retry before
+    // giving up. Without this every key rotation produces a silent 401
+    // storm that only goes away when the agent restarts.
+    let jwks = fetch_or_get_jwks(state, false).await?;
+    match try_validate(token, &header, &kid, &jwks) {
+        Ok(ctx) => Ok(ctx),
+        Err(ValidationError::Permanent(e)) => Err(e),
+        Err(ValidationError::Stale(reason)) => {
+            tracing::info!(
+                kid = %kid,
+                reason = %reason,
+                "JWKS appears stale — forcing refresh and retrying"
+            );
+            let jwks = fetch_or_get_jwks(state, true).await?;
+            try_validate(token, &header, &kid, &jwks).map_err(|e| match e {
+                ValidationError::Stale(s) | ValidationError::Permanent(s) => s,
+            })
+        }
+    }
+}
+
+#[derive(Debug)]
+enum ValidationError {
+    /// Refresh-eligible: cached JWKS may be stale.
+    Stale(String),
+    /// Refusing the token regardless of JWKS freshness.
+    Permanent(String),
+}
+
+fn try_validate(
+    token: &str,
+    header: &jsonwebtoken::Header,
+    kid: &str,
+    jwks: &JwkSet,
+) -> Result<TenantContext, ValidationError> {
+    let jwk = match jwks
+        .keys
+        .iter()
+        .find(|k| k.common.key_id.as_deref() == Some(kid))
+    {
+        Some(j) => j,
+        None => {
+            return Err(ValidationError::Stale(
+                "no matching key found in JWKS".to_string(),
+            ))
+        }
+    };
+
+    let decoding_key = DecodingKey::from_jwk(jwk)
+        .map_err(|e| ValidationError::Permanent(format!("failed to create decoding key: {e}")))?;
+
+    let mut validation = Validation::new(header.alg);
+    validation.validate_exp = true;
+    validation.validate_aud = false;
+
+    let data = match decode::<Claims>(token, &decoding_key, &validation) {
+        Ok(d) => d,
+        Err(e) => {
+            // Signature mismatch is the other refresh-eligible failure:
+            // the matching kid is present but the key bytes don't match.
+            // Everything else (expired, malformed, etc.) is permanent.
+            return Err(
+                if matches!(e.kind(), jsonwebtoken::errors::ErrorKind::InvalidSignature) {
+                    ValidationError::Stale(format!("token validation failed: {e}"))
+                } else {
+                    ValidationError::Permanent(format!("token validation failed: {e}"))
+                },
+            );
+        }
+    };
+
+    claims_to_context(data.claims).map_err(ValidationError::Permanent)
+}
+
+/// Map the decoded JWT payload into the platform-wide `TenantContext`.
+/// Pulled out for unit testing — no I/O.
+fn claims_to_context(c: Claims) -> Result<TenantContext, String> {
+    if c.tenant_id.is_empty() {
+        return Err("JWT is missing tenant_id claim".to_string());
+    }
+
+    let status = c.tenant_status.unwrap_or_else(|| {
+        tracing::warn!(
+            "JWT missing tenant_status claim for tenant {} — defaulting to Trial",
+            c.tenant_id
+        );
+        TenantStatus::Trial
+    });
+
+    Ok(TenantContext {
+        tenant_id: c.tenant_id,
+        tenant_slug: c.tenant_slug,
+        org_roles: c.org_roles.iter().map(|r| OrgRole::parse(r)).collect(),
+        products: c.products,
+        plan: c.plan,
+        status,
+        user_id: c.sub,
+        user_name: c.name.or(c.preferred_username),
+    })
+}
+
+async fn fetch_or_get_jwks(state: &JwksState, force: bool) -> Result<JwkSet, String> {
+    if !force {
+        let cached = state.jwks.read().await;
+        if let Some(ref jwks) = *cached {
+            return Ok(jwks.clone());
+        }
+    }
+
+    // Hold the write lock across the fetch so concurrent refreshers
+    // don't all hammer Keycloak when keys rotate. If another writer
+    // already populated a fresh JWKS while we were waiting (and we
+    // weren't asked to force), use theirs.
+    let mut cached = state.jwks.write().await;
+    if !force {
+        if let Some(ref jwks) = *cached {
+            return Ok(jwks.clone());
+        }
+    }
+
+    let resp = reqwest::get(&state.jwks_url)
+        .await
+        .map_err(|e| format!("failed to fetch JWKS: {e}"))?;
+
+    let jwks: JwkSet = resp
+        .json()
+        .await
+        .map_err(|e| format!("failed to parse JWKS: {e}"))?;
+
+    *cached = Some(jwks.clone());
+
+    Ok(jwks)
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+
+    fn base_claims() -> Claims {
+        Claims {
+            sub: "user-123".to_string(),
+            name: Some("Alice Acme".to_string()),
+            preferred_username: None,
+            tenant_id: "00000000-0000-0000-0000-000000000001".to_string(),
+            tenant_slug: "acme".to_string(),
+            org_roles: vec!["IT_ADMIN".to_string()],
+            products: vec!["compliance".to_string()],
+            plan: "professional".to_string(),
+            tenant_status: Some(TenantStatus::Active),
+        }
+    }
+
+    #[test]
+    fn claims_to_context_happy_path() {
+        let ctx = claims_to_context(base_claims()).expect("should map");
+        assert_eq!(ctx.tenant_id, "00000000-0000-0000-0000-000000000001");
+        assert_eq!(ctx.tenant_slug, "acme");
+        assert_eq!(ctx.org_roles, vec![OrgRole::ItAdmin]);
+        assert_eq!(ctx.products, vec!["compliance"]);
+        assert_eq!(ctx.plan, "professional");
+        assert_eq!(ctx.status, TenantStatus::Active);
+        assert_eq!(ctx.user_id, "user-123");
+        assert_eq!(ctx.user_name.as_deref(), Some("Alice Acme"));
+    }
+
+    #[test]
+    fn claims_to_context_rejects_missing_tenant_id() {
+        let mut c = base_claims();
+        c.tenant_id = "".to_string();
+        let err = claims_to_context(c).expect_err("should reject");
+        assert!(err.contains("tenant_id"));
+    }
+
+    #[test]
+    fn claims_to_context_defaults_status_when_missing() {
+        let mut c = base_claims();
+        c.tenant_status = None;
+        let ctx = claims_to_context(c).expect("should map");
+        assert_eq!(ctx.status, TenantStatus::Trial);
+    }
+
+    #[test]
+    fn claims_to_context_falls_back_to_preferred_username() {
+        let mut c = base_claims();
+        c.name = None;
+        c.preferred_username = Some("alice@acme.dev".to_string());
+        let ctx = claims_to_context(c).expect("should map");
+        assert_eq!(ctx.user_name.as_deref(), Some("alice@acme.dev"));
+    }
+
+    #[test]
+    fn claims_to_context_parses_multiple_roles() {
+        let mut c = base_claims();
+        c.org_roles = vec![
+            "IT_ADMIN".to_string(),
+            "CXO".to_string(),
+            "GARBAGE".to_string(),
+        ];
+        let ctx = claims_to_context(c).expect("should map");
+        assert_eq!(
+            ctx.org_roles,
+            vec![OrgRole::ItAdmin, OrgRole::Cxo, OrgRole::Unknown]
+        );
+    }
+
+    #[test]
+    fn try_validate_returns_stale_when_kid_missing_from_jwks() {
+        // Empty JWKS — the kid we ask for can't possibly match. The error
+        // must classify as Stale so the caller refreshes JWKS and retries.
+        let jwks = JwkSet { keys: vec![] };
+        let header = jsonwebtoken::Header {
+            alg: jsonwebtoken::Algorithm::RS256,
+            kid: Some("kid-rotated-out".to_string()),
+            ..Default::default()
+        };
+        let err = try_validate("ignored.token.value", &header, "kid-rotated-out", &jwks)
+            .expect_err("should fail");
+        match err {
+            ValidationError::Stale(s) => assert!(s.contains("no matching key")),
+            ValidationError::Permanent(s) => panic!("must be Stale, got Permanent: {s}"),
+        }
+    }
+
+    #[test]
+    fn is_write_detects_methods() {
+        assert!(!is_write(&Method::GET));
+        assert!(!is_write(&Method::HEAD));
+        assert!(!is_write(&Method::OPTIONS));
+        assert!(is_write(&Method::POST));
+        assert!(is_write(&Method::PUT));
+        assert!(is_write(&Method::PATCH));
+        assert!(is_write(&Method::DELETE));
+    }
+}

compliance-core/src/config.rs

@@ -24,6 +24,9 @@ pub struct AgentConfig {
     pub scan_schedule: String,
     pub cve_monitor_schedule: String,
     pub git_clone_base_path: String,
+    /// Base directory for content-addressed artifact blobs and per-run working
+    /// dirs (`<base>/blobs/<sha[0:2]>/<sha>`, `<base>/work/<target>/<artifact>/`).
+    pub artifact_store_base_path: String,
     pub ssh_key_path: String,
     pub keycloak_url: Option<String>,
     pub keycloak_realm: Option<String>,
@@ -33,8 +36,24 @@ pub struct AgentConfig {
     pub pentest_verification_email: Option<String>,
     pub pentest_imap_host: Option<String>,
     pub pentest_imap_port: Option<u16>,
+    /// Use implicit TLS (IMAPS, port 993) instead of plain IMAP.
+    pub pentest_imap_tls: bool,
     pub pentest_imap_username: Option<String>,
     pub pentest_imap_password: Option<SecretString>,
+    /// Static bearer for the cross-tenant admin endpoints under
+    /// `/api/v1/admin/*`. When `None`, those endpoints are not
+    /// mounted at all (defense-in-depth: ops endpoints never reach
+    /// any auth path if no operator has explicitly opted in).
+    pub admin_api_token: Option<SecretString>,
+    /// Live tenant-registry URL the scheduler consults for the list
+    /// of tenants to iterate. When `None` or unreachable, scheduler
+    /// falls back to `SCHEDULER_TENANT_IDS` env (M7.2-C).
+    pub tenant_registry_url: Option<String>,
+    /// When true, `run_scan` dispatches to the unified `run_target` pipeline
+    /// (reads `onboarded_targets`) instead of the legacy repository pipeline.
+    /// Env `UNIFIED_PIPELINE`. Defaults on; set `UNIFIED_PIPELINE=0` to use the
+    /// legacy repository pipeline.
+    pub unified_pipeline: bool,
 }
 
 #[derive(Clone, Debug, Serialize, Deserialize)]

compliance-core/src/db.rs

@@ -0,0 +1,75 @@
+//! Database helpers shared across the workspace.
+//!
+//! `tenant_filter` returns the BSON filter that every query and update
+//! against a tenant-scoped collection MUST include. Centralising it here
+//! makes the rule grep-able and keeps query call-sites from accidentally
+//! omitting it.
+//!
+//! Future work (M7.2+): each collection model grows a `tenant_id` field
+//! and every `find` / `update_*` / `delete_*` call gets this filter
+//! merged in. The migration to per-collection scoping is tracked
+//! separately — this helper is the building block.
+
+use bson::{doc, Document};
+
+use crate::TenantContext;
+
+/// Returns `{ "tenant_id": <ctx.tenant_id> }`. Merge this into every
+/// query filter against a tenant-scoped collection.
+///
+/// Use [`tenant_filter_merge`] when you need to combine it with other
+/// query conditions — it preserves both halves without overwriting.
+pub fn tenant_filter(ctx: &TenantContext) -> Document {
+    doc! { "tenant_id": &ctx.tenant_id }
+}
+
+/// Returns the tenant filter merged with caller-supplied conditions.
+/// The tenant_id always wins on key conflict — callers cannot
+/// accidentally override the scoping.
+pub fn tenant_filter_merge(ctx: &TenantContext, mut extra: Document) -> Document {
+    extra.insert("tenant_id", &ctx.tenant_id);
+    extra
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use crate::TenantStatus;
+
+    fn ctx() -> TenantContext {
+        TenantContext {
+            tenant_id: "t-abc".to_string(),
+            tenant_slug: "acme".to_string(),
+            org_roles: vec![],
+            products: vec![],
+            plan: "starter".to_string(),
+            status: TenantStatus::Active,
+            user_id: "u-1".to_string(),
+            user_name: None,
+        }
+    }
+
+    #[test]
+    fn produces_tenant_id_filter() {
+        let f = tenant_filter(&ctx());
+        assert_eq!(f.get_str("tenant_id"), Ok("t-abc"));
+        assert_eq!(f.len(), 1);
+    }
+
+    #[test]
+    fn merge_preserves_extra_conditions() {
+        let extra = doc! { "status": "open", "severity": "high" };
+        let f = tenant_filter_merge(&ctx(), extra);
+        assert_eq!(f.get_str("tenant_id"), Ok("t-abc"));
+        assert_eq!(f.get_str("status"), Ok("open"));
+        assert_eq!(f.get_str("severity"), Ok("high"));
+    }
+
+    #[test]
+    fn merge_overrides_caller_tenant_id() {
+        let extra = doc! { "tenant_id": "evil-other", "status": "open" };
+        let f = tenant_filter_merge(&ctx(), extra);
+        assert_eq!(f.get_str("tenant_id"), Ok("t-abc"));
+        assert_eq!(f.get_str("status"), Ok("open"));
+    }
+}

compliance-core/src/lib.rs

@@ -1,9 +1,18 @@
 pub mod config;
+pub mod db;
 pub mod error;
 pub mod models;
+pub mod scan_matrix;
 #[cfg(feature = "telemetry")]
 pub mod telemetry;
+pub mod tenant;
 pub mod traits;
 
+#[cfg(feature = "axum")]
+pub mod auth;
+#[cfg(feature = "axum")]
+pub mod tenant_ctx;
+
 pub use config::{AgentConfig, DashboardConfig};
 pub use error::CoreError;
+pub use tenant::{OrgRole, TenantContext, TenantStatus};

compliance-core/src/models/mcp_token.rs

@@ -0,0 +1,69 @@
+//! Per-tenant API tokens used by `compliance-mcp` to authenticate MCP
+//! HTTP requests on behalf of LLM clients (Claude Desktop, Cursor,
+//! ChatGPT, etc.) that can't run a Keycloak OIDC flow.
+//!
+//! Tokens are opaque strings of the form `mcpt_<44 url-safe random
+//! chars>`. The raw value is shown to the user exactly once at
+//! creation; the database only ever sees the SHA-256 hash. Lookups go
+//! through the cross-tenant `<prefix>__admin.mcp_tokens` collection
+//! and return the `tenant_id` the MCP server should route to.
+
+use chrono::{DateTime, Utc};
+use serde::{Deserialize, Serialize};
+
+/// Persisted token metadata. `token_hash` is the SHA-256 hex of the
+/// raw token; the raw token itself is never stored.
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct McpToken {
+    #[serde(rename = "_id", skip_serializing_if = "Option::is_none")]
+    pub id: Option<bson::oid::ObjectId>,
+    /// SHA-256 hex of the raw token. Unique index in the collection.
+    pub token_hash: String,
+    /// First 8 chars of the raw token — purely for UI display so users
+    /// can identify which token is which without re-issuing.
+    pub token_prefix: String,
+    /// Routes to `<db_prefix>_<tenant_id>` on MCP requests.
+    pub tenant_id: String,
+    /// User-given label, e.g. "Claude Desktop" or "Sharang's laptop".
+    pub name: String,
+    /// Keycloak `sub` of the user who created this token, for audit.
+    pub created_by: String,
+    #[serde(with = "super::serde_helpers::bson_datetime")]
+    pub created_at: DateTime<Utc>,
+    #[serde(default, with = "super::serde_helpers::opt_bson_datetime")]
+    pub last_used_at: Option<DateTime<Utc>>,
+    /// Soft-delete flag. A revoked token doc stays around for audit
+    /// but never authenticates.
+    #[serde(default)]
+    pub revoked: bool,
+}
+
+/// Public projection of a token — never includes the hash.
+/// Returned by `GET /api/v1/mcp-tokens`.
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct McpTokenView {
+    pub id: String,
+    pub name: String,
+    /// `mcpt_xxxx…` so the user can identify which row is which.
+    pub token_prefix: String,
+    pub created_by: String,
+    #[serde(with = "super::serde_helpers::bson_datetime")]
+    pub created_at: DateTime<Utc>,
+    #[serde(default, with = "super::serde_helpers::opt_bson_datetime")]
+    pub last_used_at: Option<DateTime<Utc>>,
+    pub revoked: bool,
+}
+
+impl From<&McpToken> for McpTokenView {
+    fn from(t: &McpToken) -> Self {
+        Self {
+            id: t.id.map(|o| o.to_hex()).unwrap_or_default(),
+            name: t.name.clone(),
+            token_prefix: t.token_prefix.clone(),
+            created_by: t.created_by.clone(),
+            created_at: t.created_at,
+            last_used_at: t.last_used_at,
+            revoked: t.revoked,
+        }
+    }
+}

compliance-core/src/models/mod.rs

@@ -7,6 +7,9 @@ pub mod finding;
 pub mod graph;
 pub mod issue;
 pub mod mcp;
+pub mod mcp_token;
+pub mod notification;
+pub mod onboarding;
 pub mod pentest;
 pub mod repository;
 pub mod sbom;
@@ -27,6 +30,14 @@ pub use graph::{
 };
 pub use issue::{IssueStatus, TrackerIssue, TrackerType};
 pub use mcp::{McpServerConfig, McpServerStatus, McpTransport};
+pub use mcp_token::{McpToken, McpTokenView};
+pub use notification::{CveNotification, NotificationSeverity, NotificationStatus};
+pub use onboarding::{
+    default_compliance_profile, Artifact, ArtifactAuth, ArtifactKind, Classification,
+    ComplianceFramework, ComplianceProfile, DetectedFact, ExternalRef, ExternalSystem,
+    GitArtifactConfig, IssueTrackerConfig, OnboardedTarget, PlcArtifactConfig, PlcFormat,
+    TargetScanConfig, TargetType, TargetTypeCandidate, WebArtifactConfig,
+};
 pub use pentest::{
     AttackChainNode, AttackNodeStatus, AuthMode, CodeContextHint, Environment, IdentityProvider,
     PentestAuthConfig, PentestConfig, PentestEvent, PentestMessage, PentestSession, PentestStats,

compliance-core/src/models/notification.rs

@@ -0,0 +1,103 @@
+use chrono::{DateTime, Utc};
+use serde::{Deserialize, Serialize};
+
+/// Status of a CVE notification
+#[derive(Debug, Clone, Serialize, Deserialize, PartialEq, Eq)]
+#[serde(rename_all = "lowercase")]
+pub enum NotificationStatus {
+    /// Newly created, not yet seen by the user
+    New,
+    /// User has seen it (e.g., opened the notification panel)
+    Read,
+    /// User has explicitly acknowledged/dismissed it
+    Dismissed,
+}
+
+/// Severity level for notification filtering
+#[derive(Debug, Clone, Serialize, Deserialize, PartialEq, Eq, PartialOrd, Ord)]
+#[serde(rename_all = "lowercase")]
+pub enum NotificationSeverity {
+    Low,
+    Medium,
+    High,
+    Critical,
+}
+
+/// A notification about a newly discovered CVE affecting a tracked dependency.
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct CveNotification {
+    #[serde(rename = "_id", skip_serializing_if = "Option::is_none")]
+    pub id: Option<bson::oid::ObjectId>,
+    /// The CVE/GHSA identifier
+    pub cve_id: String,
+    /// Repository where the vulnerable dependency is used
+    pub repo_id: String,
+    /// Repository name (denormalized for display)
+    pub repo_name: String,
+    /// Affected package name
+    pub package_name: String,
+    /// Affected version
+    pub package_version: String,
+    /// Human-readable severity
+    pub severity: NotificationSeverity,
+    /// CVSS score if available
+    pub cvss_score: Option<f64>,
+    /// Short summary of the vulnerability
+    pub summary: Option<String>,
+    /// Link to vulnerability details
+    pub url: Option<String>,
+    /// Notification lifecycle status
+    pub status: NotificationStatus,
+    /// When the CVE was first detected for this dependency
+    #[serde(with = "super::serde_helpers::bson_datetime")]
+    pub created_at: DateTime<Utc>,
+    /// When the user last interacted with this notification
+    pub read_at: Option<DateTime<Utc>>,
+}
+
+impl CveNotification {
+    pub fn new(
+        cve_id: String,
+        repo_id: String,
+        repo_name: String,
+        package_name: String,
+        package_version: String,
+        severity: NotificationSeverity,
+    ) -> Self {
+        Self {
+            id: None,
+            cve_id,
+            repo_id,
+            repo_name,
+            package_name,
+            package_version,
+            severity,
+            cvss_score: None,
+            summary: None,
+            url: None,
+            status: NotificationStatus::New,
+            created_at: Utc::now(),
+            read_at: None,
+        }
+    }
+}
+
+/// Map an OSV/NVD severity string to our notification severity
+pub fn parse_severity(s: Option<&str>, cvss: Option<f64>) -> NotificationSeverity {
+    // Prefer CVSS score if available
+    if let Some(score) = cvss {
+        return match score {
+            s if s >= 9.0 => NotificationSeverity::Critical,
+            s if s >= 7.0 => NotificationSeverity::High,
+            s if s >= 4.0 => NotificationSeverity::Medium,
+            _ => NotificationSeverity::Low,
+        };
+    }
+    // Fall back to string severity
+    match s.map(|s| s.to_uppercase()).as_deref() {
+        Some("CRITICAL") => NotificationSeverity::Critical,
+        Some("HIGH") => NotificationSeverity::High,
+        Some("MODERATE" | "MEDIUM") => NotificationSeverity::Medium,
+        _ => NotificationSeverity::Low,
+    }
+}

compliance-core/src/models/onboarding.rs

@@ -0,0 +1,753 @@
+//! The unified onboarding model.
+//!
+//! An [`OnboardedTarget`] is the single source of truth for anything the scanner
+//! can analyze. It records *what kind of software* the target is ([`TargetType`]),
+//! the concrete [`Artifact`]s that were provided for it (a git repo, a firmware
+//! image, a live URL, a PLC project, ...), the classifier's verdict, and the scan
+//! configuration. It replaces the older git-only `TrackedRepository` and the
+//! standalone `DastTarget`, both of which fold into this type as artifacts.
+
+use std::collections::HashMap;
+
+use chrono::{DateTime, Utc};
+use serde::{Deserialize, Serialize};
+
+use super::dast::{DastAuthConfig, DastTargetType};
+use super::issue::TrackerType;
+use super::pentest::{Environment, PentestConfig, PentestStrategy};
+use super::scan::ScanType;
+
+/// The family of software a target belongs to.
+///
+/// Targets look endlessly varied but fall into a small enumerable set classified
+/// by where the analyzable signal lives. This drives the scan-applicability
+/// matrix and the onboarding wizard's type selection.
+#[derive(Debug, Clone, Copy, PartialEq, Eq, Hash, Serialize, Deserialize)]
+#[serde(rename_all = "snake_case")]
+pub enum TargetType {
+    /// Browser-facing web application (front end + server).
+    WebApp,
+    /// Headless backend service / API (REST, GraphQL, gRPC).
+    BackendService,
+    /// Desktop application (Windows/macOS/Linux GUI or CLI binary).
+    DesktopApp,
+    /// Android application (APK / AAB).
+    AndroidApp,
+    /// iOS application (IPA).
+    IosApp,
+    /// Bare-metal embedded firmware (no operating system).
+    FirmwareBareMetal,
+    /// Embedded firmware running on an RTOS (Zephyr, FreeRTOS, ...).
+    FirmwareRtos,
+    /// Embedded Linux built with Yocto / OpenEmbedded (BSP + image).
+    EmbeddedLinuxYocto,
+    /// Programmable logic controller software (IEC 61131-3, PLCopen / SPS).
+    PlcSps,
+}
+
+impl std::fmt::Display for TargetType {
+    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
+        match self {
+            Self::WebApp => write!(f, "web_app"),
+            Self::BackendService => write!(f, "backend_service"),
+            Self::DesktopApp => write!(f, "desktop_app"),
+            Self::AndroidApp => write!(f, "android_app"),
+            Self::IosApp => write!(f, "ios_app"),
+            Self::FirmwareBareMetal => write!(f, "firmware_bare_metal"),
+            Self::FirmwareRtos => write!(f, "firmware_rtos"),
+            Self::EmbeddedLinuxYocto => write!(f, "embedded_linux_yocto"),
+            Self::PlcSps => write!(f, "plc_sps"),
+        }
+    }
+}
+
+/// The kind of artifact provided for a target.
+///
+/// Which scans are possible is a function of the target type *and* which of
+/// these are present (SAST needs code, DAST needs a running URL, and so on).
+#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
+#[serde(rename_all = "snake_case")]
+pub enum ArtifactKind {
+    /// A git repository (cloned for static analysis).
+    GitRepo,
+    /// A source archive (zip / tarball) with no live git remote.
+    SourceArchive,
+    /// A firmware image or binary blob.
+    FirmwareImage,
+    /// A mobile package: Android APK/AAB or iOS IPA.
+    MobilePackage,
+    /// An OCI/Docker container image reference.
+    ContainerImage,
+    /// A reachable running instance (base URL / endpoint) for dynamic testing.
+    LiveUrl,
+    /// A PLC project: PLCopen XML or Structured Text source.
+    PlcProject,
+    /// Free-form plaintext describing the target (feeds classification only).
+    PlaintextDescription,
+}
+
+impl std::fmt::Display for ArtifactKind {
+    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
+        match self {
+            Self::GitRepo => write!(f, "git_repo"),
+            Self::SourceArchive => write!(f, "source_archive"),
+            Self::FirmwareImage => write!(f, "firmware_image"),
+            Self::MobilePackage => write!(f, "mobile_package"),
+            Self::ContainerImage => write!(f, "container_image"),
+            Self::LiveUrl => write!(f, "live_url"),
+            Self::PlcProject => write!(f, "plc_project"),
+            Self::PlaintextDescription => write!(f, "plaintext_description"),
+        }
+    }
+}
+
+/// Credentials attached to an artifact.
+///
+/// This folds both `TrackedRepository`'s git auth (`auth_token` / `auth_username`
+/// / SSH key) and `DastAuthConfig`'s HTTP auth (form / bearer / cookie) into one
+/// shape so a single artifact carries whatever it needs to be fetched or probed.
+#[derive(Debug, Clone, Default, Serialize, Deserialize)]
+pub struct ArtifactAuth {
+    /// Auth method: `none` | `token` | `basic` | `bearer` | `cookie` | `form` | `ssh`.
+    #[serde(default)]
+    pub method: String,
+    /// Username (git user, basic-auth user, or `x-access-token` for PATs).
+    pub username: Option<String>,
+    /// The secret credential: PAT, password, or bearer token. Encrypted at rest.
+    pub secret: Option<String>,
+    /// Path to an SSH private key for git-over-SSH.
+    pub ssh_key_path: Option<String>,
+    /// Login URL for form-based authentication.
+    pub login_url: Option<String>,
+    /// Extra headers to send when authenticating / probing.
+    pub headers: Option<HashMap<String, String>>,
+}
+
+impl From<DastAuthConfig> for ArtifactAuth {
+    fn from(c: DastAuthConfig) -> Self {
+        Self {
+            method: c.method,
+            username: c.username,
+            // Prefer a bearer token; otherwise fall back to the password.
+            secret: c.token.or(c.password),
+            ssh_key_path: None,
+            login_url: c.login_url,
+            headers: c.headers,
+        }
+    }
+}
+
+/// Git-specific configuration for a [`ArtifactKind::GitRepo`] artifact.
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct GitArtifactConfig {
+    /// Branch to scan.
+    pub default_branch: String,
+    /// Commit SHA of the last completed scan (change-detection watermark).
+    pub last_scanned_commit: Option<String>,
+    /// Local clone path once the repo has been fetched.
+    pub local_path: Option<String>,
+}
+
+impl GitArtifactConfig {
+    /// Config for a fresh git artifact on the given branch.
+    pub fn on_branch(branch: impl Into<String>) -> Self {
+        Self {
+            default_branch: branch.into(),
+            last_scanned_commit: None,
+            local_path: None,
+        }
+    }
+}
+
+impl Default for GitArtifactConfig {
+    fn default() -> Self {
+        Self::on_branch("main")
+    }
+}
+
+/// Dynamic-analysis configuration for a [`ArtifactKind::LiveUrl`] artifact.
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct WebArtifactConfig {
+    /// Whether the endpoint is a web app, REST API, or GraphQL API.
+    pub target_kind: DastTargetType,
+    /// URL paths to exclude from crawling / scanning.
+    #[serde(default)]
+    pub excluded_paths: Vec<String>,
+    /// Maximum crawl depth.
+    pub max_crawl_depth: u32,
+    /// Rate limit in requests per second.
+    pub rate_limit: u32,
+    /// Whether destructive methods (DELETE / PUT) are permitted.
+    #[serde(default)]
+    pub allow_destructive: bool,
+}
+
+impl Default for WebArtifactConfig {
+    fn default() -> Self {
+        Self {
+            target_kind: DastTargetType::WebApp,
+            excluded_paths: Vec::new(),
+            max_crawl_depth: 3,
+            rate_limit: 10,
+            allow_destructive: false,
+        }
+    }
+}
+
+/// The source format of a PLC project artifact.
+#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
+#[serde(rename_all = "snake_case")]
+pub enum PlcFormat {
+    /// PLCopen XML project export.
+    PlcopenXml,
+    /// IEC 61131-3 Structured Text source.
+    StructuredText,
+}
+
+/// PLC-specific configuration for a [`ArtifactKind::PlcProject`] artifact.
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct PlcArtifactConfig {
+    /// The project source format.
+    pub format: PlcFormat,
+}
+
+/// A single fact discovered about a target by ingest or classification
+/// (e.g. `language=rust`, `build_system=cmake`, `mcu=stm32f429`).
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct DetectedFact {
+    /// The fact name.
+    pub key: String,
+    /// The fact value.
+    pub value: String,
+    /// What produced the fact (e.g. `tramiton`, `language-fingerprint`).
+    pub source: String,
+}
+
+impl DetectedFact {
+    /// Build a fact from its parts.
+    pub fn new(
+        key: impl Into<String>,
+        value: impl Into<String>,
+        source: impl Into<String>,
+    ) -> Self {
+        Self {
+            key: key.into(),
+            value: value.into(),
+            source: source.into(),
+        }
+    }
+}
+
+/// One concrete thing provided for a target: code, a binary, a URL, etc.
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct Artifact {
+    /// Stable per-artifact id (UUID v4) — scan steps reference this.
+    pub id: String,
+    /// What kind of artifact this is.
+    pub kind: ArtifactKind,
+    /// The source reference: git URL, blob id, live URL, or image ref.
+    pub source_ref: String,
+    /// Optional human-friendly label.
+    pub display_name: Option<String>,
+    /// Content-addressed storage path once ingested (blobs only).
+    pub stored_path: Option<String>,
+    /// SHA-256 of the ingested content (git artifacts store the head SHA).
+    pub content_hash: Option<String>,
+    /// Size of the stored blob in bytes.
+    pub size_bytes: Option<u64>,
+    /// Credentials for fetching or probing this artifact.
+    pub auth: Option<ArtifactAuth>,
+    /// Git configuration (present for [`ArtifactKind::GitRepo`]).
+    pub git: Option<GitArtifactConfig>,
+    /// Dynamic-analysis configuration (present for [`ArtifactKind::LiveUrl`]).
+    pub web: Option<WebArtifactConfig>,
+    /// PLC configuration (present for [`ArtifactKind::PlcProject`]).
+    pub plc: Option<PlcArtifactConfig>,
+    /// Facts discovered about this artifact by ingest / classification.
+    #[serde(default)]
+    pub detected: Vec<DetectedFact>,
+    /// When this artifact was last ingested.
+    #[serde(default, with = "super::serde_helpers::opt_bson_datetime")]
+    pub ingested_at: Option<DateTime<Utc>>,
+}
+
+impl Artifact {
+    /// A bare artifact of the given kind and source reference.
+    fn bare(kind: ArtifactKind, source_ref: impl Into<String>) -> Self {
+        Self {
+            id: uuid::Uuid::new_v4().to_string(),
+            kind,
+            source_ref: source_ref.into(),
+            display_name: None,
+            stored_path: None,
+            content_hash: None,
+            size_bytes: None,
+            auth: None,
+            git: None,
+            web: None,
+            plc: None,
+            detected: Vec::new(),
+            ingested_at: None,
+        }
+    }
+
+    /// A git-repository artifact tracking the given branch.
+    pub fn git_repo(url: impl Into<String>, branch: impl Into<String>) -> Self {
+        let mut a = Self::bare(ArtifactKind::GitRepo, url);
+        a.git = Some(GitArtifactConfig::on_branch(branch));
+        a
+    }
+
+    /// A live-URL artifact with default crawl settings.
+    pub fn live_url(url: impl Into<String>) -> Self {
+        let mut a = Self::bare(ArtifactKind::LiveUrl, url);
+        a.web = Some(WebArtifactConfig::default());
+        a
+    }
+
+    /// A firmware-image artifact referenced by name (blob ingested later).
+    pub fn firmware_image(source_ref: impl Into<String>) -> Self {
+        Self::bare(ArtifactKind::FirmwareImage, source_ref)
+    }
+
+    /// A source-archive artifact referenced by name (blob ingested later).
+    pub fn source_archive(source_ref: impl Into<String>) -> Self {
+        Self::bare(ArtifactKind::SourceArchive, source_ref)
+    }
+
+    /// A mobile-package artifact (APK/AAB/IPA) referenced by name.
+    pub fn mobile_package(source_ref: impl Into<String>) -> Self {
+        Self::bare(ArtifactKind::MobilePackage, source_ref)
+    }
+
+    /// A container-image artifact referenced by OCI ref.
+    pub fn container_image(source_ref: impl Into<String>) -> Self {
+        Self::bare(ArtifactKind::ContainerImage, source_ref)
+    }
+
+    /// A PLC-project artifact in the given format.
+    pub fn plc_project(source_ref: impl Into<String>, format: PlcFormat) -> Self {
+        let mut a = Self::bare(ArtifactKind::PlcProject, source_ref);
+        a.plc = Some(PlcArtifactConfig { format });
+        a
+    }
+
+    /// A plaintext-description artifact (classification input only).
+    pub fn plaintext(text: impl Into<String>) -> Self {
+        Self::bare(ArtifactKind::PlaintextDescription, text)
+    }
+}
+
+/// One ranked candidate produced by the classifier.
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct TargetTypeCandidate {
+    /// The candidate target type.
+    pub target_type: TargetType,
+    /// Confidence in `[0.0, 1.0]`.
+    pub confidence: f32,
+    /// Why this candidate was proposed.
+    pub rationale: String,
+}
+
+/// The classifier's verdict for a target: a suggested type plus ranked
+/// alternatives and the facts the decision rested on.
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct Classification {
+    /// The top-ranked target type.
+    pub suggested: TargetType,
+    /// All candidates, sorted by descending confidence.
+    #[serde(default)]
+    pub candidates: Vec<TargetTypeCandidate>,
+    /// Facts gathered during classification.
+    #[serde(default)]
+    pub facts: Vec<DetectedFact>,
+    /// Which classifiers contributed (e.g. `["tramiton", "language-fingerprint"]`).
+    #[serde(default)]
+    pub detected_by: Vec<String>,
+    /// When classification ran.
+    #[serde(with = "super::serde_helpers::bson_datetime")]
+    pub detected_at: DateTime<Utc>,
+    /// Whether a human confirmed the suggestion.
+    #[serde(default)]
+    pub confirmed: bool,
+}
+
+/// Issue-tracker linkage, migrated from `TrackedRepository`'s `tracker_*` fields.
+#[derive(Debug, Clone, Default, Serialize, Deserialize)]
+pub struct IssueTrackerConfig {
+    /// The tracker platform.
+    pub tracker_type: Option<TrackerType>,
+    /// Tracker owner / organization.
+    pub owner: Option<String>,
+    /// Tracker repository / project.
+    pub repo: Option<String>,
+    /// Per-target tracker access token.
+    pub token: Option<String>,
+}
+
+/// How a target should be scanned.
+///
+/// `enabled_scans` / `disabled_scans` override the scan-applicability matrix
+/// defaults; the pentest and tracker blocks reuse the existing wizard config.
+#[derive(Debug, Clone, Default, Serialize, Deserialize)]
+pub struct TargetScanConfig {
+    /// Scans explicitly turned on (empty means "use matrix defaults").
+    #[serde(default)]
+    pub enabled_scans: Vec<ScanType>,
+    /// Scans explicitly turned off.
+    #[serde(default)]
+    pub disabled_scans: Vec<ScanType>,
+    /// Target environment (gates destructive / active testing).
+    #[serde(default)]
+    pub environment: Environment,
+    /// Whether destructive tests are permitted for this target.
+    #[serde(default)]
+    pub allow_destructive: bool,
+    /// Pentest strategy selector.
+    pub strategy: Option<PentestStrategy>,
+    /// Full pentest wizard configuration.
+    pub pentest: Option<PentestConfig>,
+    /// Issue-tracker linkage.
+    pub issue_tracker: Option<IssueTrackerConfig>,
+}
+
+/// A sibling product in the company suite that may already hold authoritative
+/// data for a target. compliance-scanner reconciles with these rather than
+/// recomputing what they already know.
+#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
+#[serde(rename_all = "snake_case")]
+pub enum ExternalSystem {
+    /// Reproducible-build & firmware compliance engine (build plan, SBOM, VEX,
+    /// attestation).
+    Tramiton,
+    /// Code assistant (downstream remediation consumer).
+    Werkpilot,
+    /// Compliance-controls RAG (atomic controls derived from laws).
+    BreakpilotCompliance,
+}
+
+impl std::fmt::Display for ExternalSystem {
+    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
+        match self {
+            Self::Tramiton => write!(f, "tramiton"),
+            Self::Werkpilot => write!(f, "werkpilot"),
+            Self::BreakpilotCompliance => write!(f, "breakpilot_compliance"),
+        }
+    }
+}
+
+/// A link from this target to a record in a sibling product, used to reconcile
+/// existing evidence instead of recomputing it.
+///
+/// For tramiton, `project_id` is the shared cross-product key and
+/// `subject_sha256` matches a firmware artifact's [`Artifact::content_hash`]
+/// (which equals tramiton's `Artifact.sha256`).
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct ExternalRef {
+    /// Which sibling product this reference points at.
+    pub system: ExternalSystem,
+    /// The sibling product's project identifier, if known.
+    pub project_id: Option<String>,
+    /// Content digest of the subject artifact (firmware sha256), if known.
+    pub subject_sha256: Option<String>,
+    /// Reconciliation status: `linked` | `reconciled` | `unavailable`.
+    #[serde(default)]
+    pub status: String,
+    /// Opaque, offline-verifiable entitlement grant (e.g. tramiton's signed
+    /// `LicenseGrant`), if the tenant provided one.
+    pub license_grant: Option<String>,
+    /// When evidence was last reconciled from this system.
+    #[serde(default, with = "super::serde_helpers::opt_bson_datetime")]
+    pub last_reconciled_at: Option<DateTime<Utc>>,
+}
+
+impl ExternalRef {
+    /// A freshly linked (not yet reconciled) reference to a sibling system.
+    pub fn linked(system: ExternalSystem) -> Self {
+        Self {
+            system,
+            project_id: None,
+            subject_sha256: None,
+            status: "linked".to_string(),
+            license_grant: None,
+            last_reconciled_at: None,
+        }
+    }
+}
+
+/// A regulatory / standards framework a target must comply with. Drives which
+/// controls the mapping engine pulls from the [`crate::traits::ControlsProvider`].
+#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
+#[serde(rename_all = "snake_case")]
+pub enum ComplianceFramework {
+    /// EU Cyber Resilience Act.
+    Cra,
+    /// IEC 62443 (industrial automation & control systems security).
+    Iec62443,
+    /// EU General Data Protection Regulation.
+    Gdpr,
+    /// SOC 2.
+    Soc2,
+    /// ISO/IEC 27001.
+    Iso27001,
+    /// EU Radio Equipment Directive (RED) cybersecurity articles.
+    RedDirective,
+}
+
+impl std::fmt::Display for ComplianceFramework {
+    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
+        match self {
+            Self::Cra => write!(f, "cra"),
+            Self::Iec62443 => write!(f, "iec_62443"),
+            Self::Gdpr => write!(f, "gdpr"),
+            Self::Soc2 => write!(f, "soc2"),
+            Self::Iso27001 => write!(f, "iso_27001"),
+            Self::RedDirective => write!(f, "red_directive"),
+        }
+    }
+}
+
+/// The compliance scope of a target: which frameworks apply and, optionally, the
+/// jurisdiction. Captured at onboarding (with per-target-type defaults from
+/// [`default_compliance_profile`]).
+#[derive(Debug, Clone, Default, Serialize, Deserialize)]
+pub struct ComplianceProfile {
+    /// Applicable frameworks.
+    #[serde(default)]
+    pub frameworks: Vec<ComplianceFramework>,
+    /// Free-form jurisdiction (e.g. `eu`, `us`, `de`).
+    pub jurisdiction: Option<String>,
+}
+
+/// The sensible default compliance scope for a target type. Firmware / PLC /
+/// embedded default to CRA + IEC 62443; software defaults to GDPR + SOC 2.
+pub fn default_compliance_profile(target_type: TargetType) -> ComplianceProfile {
+    use ComplianceFramework::{Cra, Gdpr, Iec62443, Soc2};
+    let frameworks = match target_type {
+        TargetType::PlcSps
+        | TargetType::FirmwareBareMetal
+        | TargetType::FirmwareRtos
+        | TargetType::EmbeddedLinuxYocto => vec![Cra, Iec62443],
+        TargetType::WebApp | TargetType::BackendService => vec![Gdpr, Soc2],
+        TargetType::DesktopApp | TargetType::AndroidApp | TargetType::IosApp => {
+            vec![Gdpr, Cra]
+        }
+    };
+    ComplianceProfile {
+        frameworks,
+        jurisdiction: None,
+    }
+}
+
+/// A target onboarded for scanning: the unified replacement for the legacy
+/// `TrackedRepository` (SAST) and `DastTarget` (DAST) records.
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct OnboardedTarget {
+    /// Mongo id. Preserved from the legacy record during migration so every
+    /// downstream collection keyed by `repo_id` / `target_id` keeps resolving.
+    #[serde(rename = "_id", skip_serializing_if = "Option::is_none")]
+    pub id: Option<bson::oid::ObjectId>,
+    /// Human-friendly name.
+    #[serde(default)]
+    pub name: String,
+    /// The software family this target belongs to.
+    pub target_type: TargetType,
+    /// Optional free-form description (also a classification input).
+    pub description: Option<String>,
+    /// The artifacts provided for this target.
+    #[serde(default)]
+    pub artifacts: Vec<Artifact>,
+    /// The classifier's verdict, once run.
+    pub classification: Option<Classification>,
+    /// How this target should be scanned.
+    #[serde(default)]
+    pub scan_config: TargetScanConfig,
+    /// The compliance scope (applicable frameworks / jurisdiction).
+    #[serde(default)]
+    pub compliance_profile: ComplianceProfile,
+    /// Links to sibling products (tramiton, ...) holding reconcilable evidence.
+    #[serde(default)]
+    pub external_refs: Vec<ExternalRef>,
+    /// Cron schedule for recurring scans, if any.
+    pub scan_schedule: Option<String>,
+    /// Whether inbound webhooks are enabled for this target.
+    #[serde(default)]
+    pub webhook_enabled: bool,
+    /// HMAC secret for verifying inbound webhooks.
+    #[serde(default, skip_serializing_if = "Option::is_none")]
+    pub webhook_secret: Option<String>,
+    /// Cached count of findings across this target's scans.
+    #[serde(default)]
+    pub findings_count: u32,
+    /// Creation timestamp.
+    #[serde(
+        default = "chrono::Utc::now",
+        with = "super::serde_helpers::bson_datetime"
+    )]
+    pub created_at: DateTime<Utc>,
+    /// Last-update timestamp.
+    #[serde(
+        default = "chrono::Utc::now",
+        with = "super::serde_helpers::bson_datetime"
+    )]
+    pub updated_at: DateTime<Utc>,
+}
+
+impl OnboardedTarget {
+    /// A new target of the given type with a freshly generated webhook secret.
+    pub fn new(name: String, target_type: TargetType) -> Self {
+        let now = Utc::now();
+        let webhook_secret = uuid::Uuid::new_v4().to_string().replace('-', "");
+        Self {
+            id: None,
+            name,
+            target_type,
+            description: None,
+            artifacts: Vec::new(),
+            classification: None,
+            scan_config: TargetScanConfig::default(),
+            compliance_profile: default_compliance_profile(target_type),
+            external_refs: Vec::new(),
+            scan_schedule: None,
+            webhook_enabled: false,
+            webhook_secret: Some(webhook_secret),
+            findings_count: 0,
+            created_at: now,
+            updated_at: now,
+        }
+    }
+
+    /// The first artifact of the given kind, if present.
+    pub fn first_of(&self, kind: ArtifactKind) -> Option<&Artifact> {
+        self.artifacts.iter().find(|a| a.kind == kind)
+    }
+
+    /// Whether the target has at least one artifact of the given kind.
+    pub fn has(&self, kind: ArtifactKind) -> bool {
+        self.artifacts.iter().any(|a| a.kind == kind)
+    }
+
+    /// The primary code artifact (git repo or source archive), if any.
+    pub fn code_artifact(&self) -> Option<&Artifact> {
+        self.artifacts
+            .iter()
+            .find(|a| matches!(a.kind, ArtifactKind::GitRepo | ArtifactKind::SourceArchive))
+    }
+
+    /// The live-URL artifact, if any.
+    pub fn live_url(&self) -> Option<&Artifact> {
+        self.first_of(ArtifactKind::LiveUrl)
+    }
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+
+    fn sample_target() -> OnboardedTarget {
+        let mut t = OnboardedTarget::new("acme-web".to_string(), TargetType::WebApp);
+        t.artifacts.push(Artifact::git_repo(
+            "https://git.example.com/acme.git",
+            "main",
+        ));
+        t.artifacts
+            .push(Artifact::live_url("https://acme.example.com"));
+        t
+    }
+
+    #[test]
+    fn onboarded_target_bson_round_trip() {
+        let t = sample_target();
+        let b = bson::to_bson(&t).expect("serialize");
+        let back: OnboardedTarget = bson::from_bson(b.clone()).expect("deserialize");
+        let b2 = bson::to_bson(&back).expect("re-serialize");
+        assert_eq!(b, b2);
+    }
+
+    #[test]
+    fn enum_display_is_snake_case() {
+        assert_eq!(
+            TargetType::FirmwareBareMetal.to_string(),
+            "firmware_bare_metal"
+        );
+        assert_eq!(TargetType::PlcSps.to_string(), "plc_sps");
+        assert_eq!(ArtifactKind::PlcProject.to_string(), "plc_project");
+        assert_eq!(ArtifactKind::MobilePackage.to_string(), "mobile_package");
+    }
+
+    #[test]
+    fn helpers_locate_artifacts() {
+        let t = sample_target();
+        assert!(t.has(ArtifactKind::GitRepo));
+        assert!(t.live_url().is_some());
+        assert!(t.code_artifact().is_some());
+        assert!(!t.has(ArtifactKind::FirmwareImage));
+        assert_eq!(
+            t.first_of(ArtifactKind::GitRepo).map(|a| a.kind),
+            Some(ArtifactKind::GitRepo)
+        );
+    }
+
+    #[test]
+    fn new_target_generates_webhook_secret() {
+        let t = OnboardedTarget::new("t".to_string(), TargetType::BackendService);
+        let secret = t.webhook_secret.expect("secret present");
+        assert_eq!(secret.len(), 32);
+        assert!(!secret.contains('-'));
+    }
+
+    #[test]
+    fn dast_auth_folds_into_artifact_auth() {
+        let dast = DastAuthConfig {
+            method: "bearer".to_string(),
+            login_url: Some("https://x/login".to_string()),
+            username: Some("user".to_string()),
+            password: Some("pw".to_string()),
+            token: Some("tok".to_string()),
+            headers: None,
+        };
+        let auth = ArtifactAuth::from(dast);
+        assert_eq!(auth.method, "bearer");
+        // Bearer token wins over password.
+        assert_eq!(auth.secret.as_deref(), Some("tok"));
+        assert_eq!(auth.login_url.as_deref(), Some("https://x/login"));
+    }
+
+    #[test]
+    fn each_artifact_gets_a_unique_id() {
+        let a = Artifact::firmware_image("fw.bin");
+        let b = Artifact::firmware_image("fw.bin");
+        assert_ne!(a.id, b.id);
+    }
+
+    #[test]
+    fn firmware_default_profile_is_cra_and_62443() {
+        let p = default_compliance_profile(TargetType::FirmwareBareMetal);
+        assert!(p.frameworks.contains(&ComplianceFramework::Cra));
+        assert!(p.frameworks.contains(&ComplianceFramework::Iec62443));
+    }
+
+    #[test]
+    fn webapp_default_profile_is_gdpr_and_soc2() {
+        let p = default_compliance_profile(TargetType::WebApp);
+        assert!(p.frameworks.contains(&ComplianceFramework::Gdpr));
+        assert!(p.frameworks.contains(&ComplianceFramework::Soc2));
+    }
+
+    #[test]
+    fn new_target_gets_default_profile_and_no_external_refs() {
+        let t = OnboardedTarget::new("fw".to_string(), TargetType::FirmwareRtos);
+        assert!(!t.compliance_profile.frameworks.is_empty());
+        assert!(t.external_refs.is_empty());
+    }
+
+    #[test]
+    fn external_ref_linked_defaults() {
+        let r = ExternalRef::linked(ExternalSystem::Tramiton);
+        assert_eq!(r.system, ExternalSystem::Tramiton);
+        assert_eq!(r.status, "linked");
+        assert!(r.project_id.is_none());
+        assert!(r.last_reconciled_at.is_none());
+    }
+}

compliance-core/src/models/scan.rs

@@ -3,7 +3,7 @@ use serde::{Deserialize, Serialize};
 
 use super::repository::ScanTrigger;
 
-#[derive(Debug, Clone, Serialize, Deserialize, PartialEq, Eq)]
+#[derive(Debug, Clone, Copy, Serialize, Deserialize, PartialEq, Eq)]
 #[serde(rename_all = "lowercase")]
 pub enum ScanType {
     Sast,
@@ -16,6 +16,14 @@ pub enum ScanType {
     SecretDetection,
     Lint,
     CodeReview,
+    /// Static analysis of a firmware image (unpack + component CVE).
+    FirmwareStatic,
+    /// Control-logic security analysis of PLC / SPS programs.
+    PlcControlLogic,
+    /// Static analysis of a mobile package (APK / AAB / IPA).
+    MobileStatic,
+    /// Static analysis of a container image.
+    ContainerScan,
 }
 
 impl std::fmt::Display for ScanType {
@@ -31,6 +39,10 @@ impl std::fmt::Display for ScanType {
             Self::SecretDetection => write!(f, "secret_detection"),
             Self::Lint => write!(f, "lint"),
             Self::CodeReview => write!(f, "code_review"),
+            Self::FirmwareStatic => write!(f, "firmware_static"),
+            Self::PlcControlLogic => write!(f, "plc_control_logic"),
+            Self::MobileStatic => write!(f, "mobile_static"),
+            Self::ContainerScan => write!(f, "container_scan"),
         }
     }
 }
@@ -47,6 +59,8 @@ pub enum ScanRunStatus {
 #[serde(rename_all = "snake_case")]
 pub enum ScanPhase {
     ChangeDetection,
+    ArtifactIngest,
+    Classification,
     Sast,
     SbomGeneration,
     CveScanning,
@@ -55,6 +69,10 @@ pub enum ScanPhase {
     LintScanning,
     CodeReview,
     GraphBuilding,
+    FirmwareStatic,
+    PlcAnalysis,
+    MobileStatic,
+    ContainerScan,
     LlmTriage,
     IssueCreation,
     DastScanning,

compliance-core/src/scan_matrix.rs

@@ -0,0 +1,379 @@
+//! The scan-applicability matrix.
+//!
+//! Which scans are possible for a target is a function of its [`TargetType`] and
+//! which [`ArtifactKind`]s are actually present: SAST needs code, DAST needs a
+//! running URL, firmware-static analysis needs a firmware image, and so on. This
+//! module encodes that as a table — one rule set per target type — and resolves
+//! it against a concrete [`OnboardedTarget`] into a list of [`ScanOption`]s the
+//! onboarding wizard and the scan pipeline both consume.
+
+use crate::models::{ArtifactKind, OnboardedTarget, ScanType, TargetType};
+
+/// What an artifact a scan needs in order to run.
+#[derive(Debug, Clone, Copy, PartialEq, Eq)]
+pub enum ArtifactRequirement {
+    /// Source code — a git repo or a source archive.
+    Code,
+    /// A reachable running instance (live URL / endpoint).
+    RunningUrl,
+    /// A firmware image / binary blob.
+    Firmware,
+    /// A PLC project (PLCopen XML or Structured Text).
+    Plc,
+    /// A mobile package (APK / AAB / IPA).
+    Mobile,
+    /// A container image.
+    Container,
+    /// No specific artifact required.
+    Any,
+}
+
+/// A static rule: this scan applies to a target type, needs this artifact, and
+/// defaults on/off. The rationale explains the entry to the user.
+#[derive(Debug, Clone, Copy)]
+pub struct ScanRule {
+    /// The scan this rule governs.
+    pub scan: ScanType,
+    /// Whether the scan is on by default (only when its artifact is present).
+    pub default_on: bool,
+    /// Human-readable explanation of what the scan does here.
+    pub rationale: &'static str,
+    /// The artifact the scan consumes.
+    pub requires: ArtifactRequirement,
+}
+
+impl ScanRule {
+    const fn new(
+        scan: ScanType,
+        default_on: bool,
+        rationale: &'static str,
+        requires: ArtifactRequirement,
+    ) -> Self {
+        Self {
+            scan,
+            default_on,
+            rationale,
+            requires,
+        }
+    }
+}
+
+/// A resolved scan choice for a specific target: a rule intersected with the
+/// artifacts actually present. `blocked_reason` is `Some` when the required
+/// artifact is missing.
+#[derive(Debug, Clone)]
+pub struct ScanOption {
+    /// The scan.
+    pub scan: ScanType,
+    /// Whether to pre-select the scan (false when blocked).
+    pub default_on: bool,
+    /// Why the scan is offered.
+    pub rationale: String,
+    /// The artifact kind the scan needs, if any specific one.
+    pub required_artifact: Option<ArtifactKind>,
+    /// Set when the required artifact is absent, explaining the block.
+    pub blocked_reason: Option<String>,
+}
+
+/// The SAST umbrella: every static-analysis sub-scan that runs over source code.
+fn sast_umbrella() -> Vec<ScanRule> {
+    use ArtifactRequirement::Code;
+    vec![
+        ScanRule::new(
+            ScanType::Sast,
+            true,
+            "Static analysis (Semgrep) over source",
+            Code,
+        ),
+        ScanRule::new(
+            ScanType::Sbom,
+            true,
+            "Software bill of materials from source",
+            Code,
+        ),
+        ScanRule::new(
+            ScanType::Cve,
+            true,
+            "Match dependencies against known CVEs",
+            Code,
+        ),
+        ScanRule::new(
+            ScanType::SecretDetection,
+            true,
+            "Scan source for committed secrets",
+            Code,
+        ),
+        ScanRule::new(ScanType::Lint, true, "Language linters over source", Code),
+        ScanRule::new(
+            ScanType::Gdpr,
+            true,
+            "GDPR data-handling pattern checks",
+            Code,
+        ),
+        ScanRule::new(
+            ScanType::OAuth,
+            true,
+            "OAuth misconfiguration patterns",
+            Code,
+        ),
+        ScanRule::new(
+            ScanType::Graph,
+            true,
+            "Build the code graph for impact analysis",
+            Code,
+        ),
+        ScanRule::new(
+            ScanType::CodeReview,
+            false,
+            "LLM code review over changed source",
+            Code,
+        ),
+    ]
+}
+
+/// The rule set for a target type. Scans that are never applicable to a type are
+/// simply absent (e.g. DAST is not listed for a PLC target).
+pub fn rules_for(target_type: TargetType) -> Vec<ScanRule> {
+    use ArtifactRequirement::{Firmware, Mobile, Plc, RunningUrl};
+    match target_type {
+        TargetType::WebApp | TargetType::BackendService => {
+            let mut r = sast_umbrella();
+            r.push(ScanRule::new(
+                ScanType::Dast,
+                true,
+                "Dynamic scan of the running endpoint",
+                RunningUrl,
+            ));
+            r
+        }
+        TargetType::DesktopApp => sast_umbrella(),
+        TargetType::AndroidApp | TargetType::IosApp => {
+            let mut r = sast_umbrella();
+            r.push(ScanRule::new(
+                ScanType::MobileStatic,
+                true,
+                "Static analysis of the mobile package (manifest, permissions, libs)",
+                Mobile,
+            ));
+            r
+        }
+        TargetType::FirmwareBareMetal | TargetType::FirmwareRtos => {
+            let mut r = sast_umbrella();
+            r.push(ScanRule::new(
+                ScanType::FirmwareStatic,
+                true,
+                "Unpack and statically analyze the firmware image",
+                Firmware,
+            ));
+            r.push(ScanRule::new(
+                ScanType::Sbom,
+                true,
+                "SBOM from the firmware image (binwalk / tramiton)",
+                Firmware,
+            ));
+            r.push(ScanRule::new(
+                ScanType::Cve,
+                true,
+                "Match firmware components against known CVEs",
+                Firmware,
+            ));
+            r
+        }
+        TargetType::EmbeddedLinuxYocto => {
+            let mut r = sast_umbrella();
+            r.push(ScanRule::new(
+                ScanType::FirmwareStatic,
+                true,
+                "EMBA / binwalk static analysis of the image",
+                Firmware,
+            ));
+            r.push(ScanRule::new(
+                ScanType::Sbom,
+                true,
+                "SBOM from image layers / recipes",
+                Firmware,
+            ));
+            r.push(ScanRule::new(
+                ScanType::Cve,
+                true,
+                "Match image components against known CVEs",
+                Firmware,
+            ));
+            r.push(ScanRule::new(
+                ScanType::Dast,
+                false,
+                "Dynamic scan of exposed network services (if any)",
+                RunningUrl,
+            ));
+            r
+        }
+        TargetType::PlcSps => vec![ScanRule::new(
+            ScanType::PlcControlLogic,
+            true,
+            "Control-logic security rules over the PLC program",
+            Plc,
+        )],
+    }
+}
+
+/// Whether an active penetration test is applicable to this target type.
+///
+/// Pentest runs as its own session (not a [`ScanType`] scan) and needs a
+/// reachable running target, so it is offered only for the network-reachable
+/// families.
+pub fn supports_pentest(target_type: TargetType) -> bool {
+    matches!(
+        target_type,
+        TargetType::WebApp
+            | TargetType::BackendService
+            | TargetType::AndroidApp
+            | TargetType::IosApp
+            | TargetType::EmbeddedLinuxYocto
+    )
+}
+
+/// The representative artifact kind a requirement is satisfied by.
+fn representative_kind(req: ArtifactRequirement) -> Option<ArtifactKind> {
+    match req {
+        ArtifactRequirement::Code => Some(ArtifactKind::GitRepo),
+        ArtifactRequirement::RunningUrl => Some(ArtifactKind::LiveUrl),
+        ArtifactRequirement::Firmware => Some(ArtifactKind::FirmwareImage),
+        ArtifactRequirement::Plc => Some(ArtifactKind::PlcProject),
+        ArtifactRequirement::Mobile => Some(ArtifactKind::MobilePackage),
+        ArtifactRequirement::Container => Some(ArtifactKind::ContainerImage),
+        ArtifactRequirement::Any => None,
+    }
+}
+
+/// Whether the target carries an artifact that satisfies the requirement.
+fn requirement_satisfied(req: ArtifactRequirement, target: &OnboardedTarget) -> bool {
+    match req {
+        ArtifactRequirement::Code => target.code_artifact().is_some(),
+        ArtifactRequirement::RunningUrl => target.has(ArtifactKind::LiveUrl),
+        ArtifactRequirement::Firmware => target.has(ArtifactKind::FirmwareImage),
+        ArtifactRequirement::Plc => target.has(ArtifactKind::PlcProject),
+        ArtifactRequirement::Mobile => target.has(ArtifactKind::MobilePackage),
+        ArtifactRequirement::Container => target.has(ArtifactKind::ContainerImage),
+        ArtifactRequirement::Any => true,
+    }
+}
+
+/// Resolve the matrix for a concrete target into the scans it can run, marking
+/// any whose required artifact is missing as blocked.
+pub fn applicable_scans(target: &OnboardedTarget) -> Vec<ScanOption> {
+    rules_for(target.target_type)
+        .into_iter()
+        .map(|rule| {
+            let satisfied = requirement_satisfied(rule.requires, target);
+            let required_artifact = representative_kind(rule.requires);
+            let blocked_reason = if satisfied {
+                None
+            } else {
+                Some(match required_artifact {
+                    Some(kind) => format!("no {kind} artifact provided"),
+                    None => "required artifact missing".to_string(),
+                })
+            };
+            ScanOption {
+                scan: rule.scan,
+                default_on: rule.default_on && satisfied,
+                rationale: rule.rationale.to_string(),
+                required_artifact,
+                blocked_reason,
+            }
+        })
+        .collect()
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use crate::models::{Artifact, PlcFormat};
+
+    fn target_with(target_type: TargetType, artifacts: Vec<Artifact>) -> OnboardedTarget {
+        let mut t = OnboardedTarget::new("t".to_string(), target_type);
+        t.artifacts = artifacts;
+        t
+    }
+
+    fn option<'a>(opts: &'a [ScanOption], scan: ScanType) -> Option<&'a ScanOption> {
+        opts.iter().find(|o| o.scan == scan)
+    }
+
+    #[test]
+    fn webapp_with_code_and_url_offers_sast_and_dast() {
+        let t = target_with(
+            TargetType::WebApp,
+            vec![
+                Artifact::git_repo("u", "main"),
+                Artifact::live_url("http://x"),
+            ],
+        );
+        let opts = applicable_scans(&t);
+        let sast = option(&opts, ScanType::Sast).expect("sast offered");
+        assert!(sast.default_on && sast.blocked_reason.is_none());
+        let dast = option(&opts, ScanType::Dast).expect("dast offered");
+        assert!(dast.default_on && dast.blocked_reason.is_none());
+    }
+
+    #[test]
+    fn webapp_without_url_blocks_dast() {
+        let t = target_with(TargetType::WebApp, vec![Artifact::git_repo("u", "main")]);
+        let opts = applicable_scans(&t);
+        let dast = option(&opts, ScanType::Dast).expect("dast listed");
+        assert!(!dast.default_on);
+        assert!(dast.blocked_reason.is_some());
+        assert_eq!(dast.required_artifact, Some(ArtifactKind::LiveUrl));
+    }
+
+    #[test]
+    fn firmware_offers_firmware_static_and_not_dast() {
+        let t = target_with(
+            TargetType::FirmwareBareMetal,
+            vec![Artifact::firmware_image("fw.bin")],
+        );
+        let opts = applicable_scans(&t);
+        let fw = option(&opts, ScanType::FirmwareStatic).expect("firmware static offered");
+        assert!(fw.default_on && fw.blocked_reason.is_none());
+        assert!(option(&opts, ScanType::Dast).is_none());
+    }
+
+    #[test]
+    fn plc_offers_only_control_logic() {
+        let t = target_with(
+            TargetType::PlcSps,
+            vec![Artifact::plc_project("p.xml", PlcFormat::PlcopenXml)],
+        );
+        let opts = applicable_scans(&t);
+        assert_eq!(opts.len(), 1);
+        assert_eq!(opts[0].scan, ScanType::PlcControlLogic);
+        assert!(opts[0].default_on);
+    }
+
+    #[test]
+    fn pentest_support_matches_reachable_families() {
+        assert!(supports_pentest(TargetType::WebApp));
+        assert!(supports_pentest(TargetType::BackendService));
+        assert!(!supports_pentest(TargetType::PlcSps));
+        assert!(!supports_pentest(TargetType::FirmwareBareMetal));
+        assert!(!supports_pentest(TargetType::DesktopApp));
+    }
+
+    #[test]
+    fn every_target_type_has_at_least_one_rule() {
+        for tt in [
+            TargetType::WebApp,
+            TargetType::BackendService,
+            TargetType::DesktopApp,
+            TargetType::AndroidApp,
+            TargetType::IosApp,
+            TargetType::FirmwareBareMetal,
+            TargetType::FirmwareRtos,
+            TargetType::EmbeddedLinuxYocto,
+            TargetType::PlcSps,
+        ] {
+            assert!(!rules_for(tt).is_empty(), "{tt} has no rules");
+        }
+    }
+}

compliance-core/src/tenant.rs

@@ -0,0 +1,165 @@
+//! Tenant context propagated through every authenticated request.
+//!
+//! M7.1 single source of truth for "who is this request for". Claims come
+//! from a Keycloak-issued JWT and land here via [`crate::auth::require_jwt_auth`]
+//! (enabled with the `axum` feature). Handlers reach into the request
+//! extensions with the [`crate::tenant_ctx::TenantCtx`] extractor.
+//!
+//! The shape mirrors the JWT claim names the breakpilot-platform realm
+//! emits (see `platform/orca-platform/dev/keycloak/realm-export.json`).
+//! Stable contract — adding fields is fine; renaming is a breaking
+//! change for every downstream product.
+
+use serde::{Deserialize, Serialize};
+
+/// Tenant lifecycle status from `PLATFORM_ARCHITECTURE.md §5c`.
+///
+/// Drives the `tenant_status` middleware:
+/// * `Demo` / `Trial` / `Active` — full access.
+/// * `Frozen` — read-only after cancel / non-payment. Mutating endpoints
+///   return 402.
+/// * `Archived` — data-retention window closed. Every endpoint returns 410.
+#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
+#[serde(rename_all = "lowercase")]
+pub enum TenantStatus {
+    Demo,
+    Trial,
+    Active,
+    Frozen,
+    Archived,
+}
+
+impl TenantStatus {
+    /// True for statuses that block write paths.
+    pub fn is_frozen(&self) -> bool {
+        matches!(self, TenantStatus::Frozen)
+    }
+    /// True for statuses that block every request.
+    pub fn is_archived(&self) -> bool {
+        matches!(self, TenantStatus::Archived)
+    }
+    /// True for the shared demo tenant — metering, billing, and audit
+    /// export are skipped.
+    pub fn is_demo(&self) -> bool {
+        matches!(self, TenantStatus::Demo)
+    }
+}
+
+impl std::fmt::Display for TenantStatus {
+    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
+        match self {
+            Self::Demo => write!(f, "demo"),
+            Self::Trial => write!(f, "trial"),
+            Self::Active => write!(f, "active"),
+            Self::Frozen => write!(f, "frozen"),
+            Self::Archived => write!(f, "archived"),
+        }
+    }
+}
+
+/// Org-level role baked into the JWT by the realm's protocol mapper.
+/// `PLATFORM_ARCHITECTURE.md §6` is the canonical list.
+#[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
+#[serde(rename_all = "UPPERCASE")]
+pub enum OrgRole {
+    ItAdmin,
+    Cxo,
+    Finance,
+    Legal,
+    User,
+    /// Anything we haven't enumerated yet — forwards-compatible.
+    #[serde(other)]
+    Unknown,
+}
+
+impl OrgRole {
+    /// Parses a single role string (Keycloak emits these as `IT_ADMIN`,
+    /// `CXO`, etc.). Round-trips with the JSON layer.
+    pub fn parse(s: &str) -> Self {
+        match s {
+            "IT_ADMIN" => OrgRole::ItAdmin,
+            "CXO" => OrgRole::Cxo,
+            "FINANCE" => OrgRole::Finance,
+            "LEGAL" => OrgRole::Legal,
+            "USER" => OrgRole::User,
+            _ => OrgRole::Unknown,
+        }
+    }
+}
+
+/// Everything we know about the requesting tenant at the moment a request
+/// lands. Cheap to clone (every field is owned + small).
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct TenantContext {
+    /// `tenants.id` from the platform's tenant-registry (UUID).
+    pub tenant_id: String,
+    /// Lowercase URL-safe slug. Useful for log lines + audit emit.
+    pub tenant_slug: String,
+    /// Org-level roles the authenticated user holds inside this tenant.
+    /// Drives the per-handler RBAC in `M7.1-followup` PRs.
+    pub org_roles: Vec<OrgRole>,
+    /// Products this tenant is currently entitled to. Used to short-circuit
+    /// MCP / API calls for unsubscribed products.
+    pub products: Vec<String>,
+    /// Customer plan (`starter` / `professional` / `enterprise`) — gates
+    /// per-plan feature flags (e.g., MCP server is enterprise-only).
+    pub plan: String,
+    /// Lifecycle status — read by `require_tenant_status` middleware.
+    pub status: TenantStatus,
+    /// Keycloak user id of the requester (`sub` claim). Required for audit
+    /// emit so we know WHO did the thing, not just WHICH tenant.
+    pub user_id: String,
+    /// Optional user-facing name from the `name` / `preferred_username`
+    /// claim. Only used in audit + log lines.
+    pub user_name: Option<String>,
+}
+
+impl TenantContext {
+    /// True if the caller holds at least one of the listed roles.
+    pub fn has_any_role(&self, roles: &[OrgRole]) -> bool {
+        self.org_roles.iter().any(|r| roles.contains(r))
+    }
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    #[test]
+    fn org_role_parses_known_values() {
+        assert_eq!(OrgRole::parse("IT_ADMIN"), OrgRole::ItAdmin);
+        assert_eq!(OrgRole::parse("CXO"), OrgRole::Cxo);
+        assert_eq!(OrgRole::parse("USER"), OrgRole::User);
+    }
+
+    #[test]
+    fn org_role_unknown_is_forward_compat() {
+        assert_eq!(OrgRole::parse("FUTURE_ROLE"), OrgRole::Unknown);
+    }
+
+    #[test]
+    fn tenant_status_predicates() {
+        assert!(TenantStatus::Frozen.is_frozen());
+        assert!(!TenantStatus::Active.is_frozen());
+        assert!(TenantStatus::Archived.is_archived());
+        assert!(TenantStatus::Demo.is_demo());
+        assert!(!TenantStatus::Active.is_demo());
+    }
+
+    #[test]
+    fn has_any_role_matches() {
+        let ctx = TenantContext {
+            tenant_id: "t1".into(),
+            tenant_slug: "acme".into(),
+            org_roles: vec![OrgRole::ItAdmin],
+            products: vec![],
+            plan: "professional".into(),
+            status: TenantStatus::Active,
+            user_id: "u".into(),
+            user_name: None,
+        };
+        assert!(ctx.has_any_role(&[OrgRole::ItAdmin]));
+        assert!(ctx.has_any_role(&[OrgRole::Cxo, OrgRole::ItAdmin]));
+        assert!(!ctx.has_any_role(&[OrgRole::User, OrgRole::Cxo]));
+    }
+}

compliance-core/src/tenant_ctx.rs

@@ -0,0 +1,95 @@
+//! Axum extractor for the per-request `TenantContext`.
+//!
+//! Handlers consume it as a normal extractor argument:
+//!
+//! ```ignore
+//! async fn list_findings(TenantCtx(ctx): TenantCtx) -> Json<...> {
+//!     let filter = compliance_core::db::tenant_filter(&ctx);
+//!     ...
+//! }
+//! ```
+//!
+//! The middleware ([`crate::auth::require_jwt_auth`]) is responsible for
+//! inserting the context into the request extensions. If it's missing on
+//! a route that uses this extractor, that's a bug in the wiring — we
+//! return 401 so the caller sees an auth failure rather than a 500.
+
+use axum::{
+    extract::FromRequestParts,
+    http::{request::Parts, StatusCode},
+    response::{IntoResponse, Response},
+};
+
+use crate::TenantContext;
+
+#[derive(Debug, Clone)]
+pub struct TenantCtx(pub TenantContext);
+
+#[derive(Debug)]
+pub struct TenantCtxRejection;
+
+impl IntoResponse for TenantCtxRejection {
+    fn into_response(self) -> Response {
+        (
+            StatusCode::UNAUTHORIZED,
+            "Missing tenant context — request was not authenticated",
+        )
+            .into_response()
+    }
+}
+
+impl<S> FromRequestParts<S> for TenantCtx
+where
+    S: Send + Sync,
+{
+    type Rejection = TenantCtxRejection;
+
+    async fn from_request_parts(parts: &mut Parts, _state: &S) -> Result<Self, Self::Rejection> {
+        parts
+            .extensions
+            .get::<TenantContext>()
+            .cloned()
+            .map(TenantCtx)
+            .ok_or(TenantCtxRejection)
+    }
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use crate::TenantStatus;
+    use axum::http::Request;
+
+    fn ctx() -> TenantContext {
+        TenantContext {
+            tenant_id: "t-1".to_string(),
+            tenant_slug: "acme".to_string(),
+            org_roles: vec![],
+            products: vec![],
+            plan: "starter".to_string(),
+            status: TenantStatus::Active,
+            user_id: "u-1".to_string(),
+            user_name: None,
+        }
+    }
+
+    #[tokio::test]
+    async fn extracts_context_when_present() {
+        let mut req = Request::new(());
+        req.extensions_mut().insert(ctx());
+        let (mut parts, _) = req.into_parts();
+        let TenantCtx(found) = TenantCtx::from_request_parts(&mut parts, &())
+            .await
+            .expect("extractor should succeed");
+        assert_eq!(found.tenant_id, "t-1");
+    }
+
+    #[tokio::test]
+    async fn rejects_when_missing() {
+        let req: Request<()> = Request::new(());
+        let (mut parts, _) = req.into_parts();
+        let err = TenantCtx::from_request_parts(&mut parts, &()).await;
+        assert!(err.is_err());
+    }
+}

compliance-core/src/traits/classifier.rs

@@ -0,0 +1,51 @@
+//! The target-classification port.
+//!
+//! A [`TargetClassifier`] inspects a target's artifacts (and optionally their
+//! ingested working directories) and proposes one or more [`ClassifierVerdict`]s
+//! — a target type, a confidence, and the facts the decision rested on. Concrete
+//! classifiers live in the agent (language/build-system fingerprinting, a
+//! firmware detector backed by tramiton, etc.); a registry merges and ranks
+//! their verdicts. This mirrors the [`crate::traits::Scanner`] port so the two
+//! read the same way.
+
+use std::collections::HashMap;
+use std::path::PathBuf;
+
+use crate::error::CoreError;
+use crate::models::{Artifact, DetectedFact, TargetType};
+
+/// Everything a classifier needs to reason about a target.
+pub struct ClassificationInput<'a> {
+    /// The artifacts declared for the target.
+    pub artifacts: &'a [Artifact],
+    /// Ingested working paths, keyed by [`Artifact::id`]. Absent for artifacts
+    /// with no on-disk form (e.g. a live URL).
+    pub working_paths: &'a HashMap<String, PathBuf>,
+    /// Free-form description of the target, if provided.
+    pub description: Option<&'a str>,
+}
+
+/// A single classifier's proposal for a target.
+pub struct ClassifierVerdict {
+    /// The proposed target type.
+    pub target_type: TargetType,
+    /// Confidence in `[0.0, 1.0]`.
+    pub confidence: f32,
+    /// Facts that informed the proposal.
+    pub facts: Vec<DetectedFact>,
+    /// Human-readable explanation.
+    pub rationale: String,
+}
+
+/// A source of target-type classification.
+#[allow(async_fn_in_trait)]
+pub trait TargetClassifier: Send + Sync {
+    /// Stable identifier for this classifier (recorded in `detected_by`).
+    fn name(&self) -> &str;
+
+    /// Propose zero or more ranked verdicts for the given input.
+    async fn classify(
+        &self,
+        input: &ClassificationInput<'_>,
+    ) -> Result<Vec<ClassifierVerdict>, CoreError>;
+}