feat(pipeline): unified run_target execution behind UNIFIED_PIPELINE (#133 part 2)

Wire the scan-plan builder into a runnable pipeline that scans an OnboardedTarget:
- AgentConfig.unified_pipeline (env UNIFIED_PIPELINE, default off). agent.run_scan
  dispatches to run_target when set, else the legacy run().
- orchestrator::run_target: loads the target from onboarded_targets, creates a
  ScanRun, and runs run_target_pipeline; run_target_pipeline builds the scan plan
  and, for a code (git) artifact, reuses the full legacy pipeline via a
  TrackedRepository view (clone → SAST umbrella → triage → persist → issues →
  DAST) then syncs findings_count + the git watermark back to the target.
  Firmware/PLC/mobile scanners are follow-ups (#128/#129/#130); URL-only targets
  attempt DAST.
- repo_view_from_target: inverse of the migration's repo_to_target, _id-preserving.

Additive + flag-gated: the legacy path is unchanged and default. Unit tests for
repo_view_from_target (+ the part-1 build_scan_plan tests). Full E2E verification
is via UNIFIED_PIPELINE=1 on a running instance.

Closes #133.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

.env.example

@@ -34,24 +34,6 @@ SCAN_SCHEDULE=0 0 */6 * * *
 CVE_MONITOR_SCHEDULE=0 0 0 * * *
 GIT_CLONE_BASE_PATH=/tmp/compliance-scanner/repos
 
-# Dynamic PLC testing — ephemeral soft-PLC provisioning (#183). Off unless
-# enabled; requires the agent container to have Docker access (socket mount).
-# When on, a PLC/SPS target with control logic but no reachable device gets its
-# logic instantiated on a throwaway OpenPLC, probed, then torn down.
-PLC_RUNTIME_ENABLED=0
-PLC_RUNTIME_IMAGE=registry.meghsakha.com/openplc:latest
-PLC_RUNTIME_NETWORK=certifai
-PLC_RUNTIME_MEMORY=512m
-PLC_RUNTIME_CPUS=0.5
-PLC_RUNTIME_MAX_LIFETIME_SECS=180
-PLC_RUNTIME_OPENPLC_USER=openplc
-PLC_RUNTIME_OPENPLC_PASSWORD=openplc
-
-# Werkbank runner API (/api/v1/werkbank/jobs/*, /api/v1/werkbank/artifacts/*).
-# When set, mounts the runner-facing queue + artifact endpoints behind this
-# bearer token; runners present the same token. Unset = endpoints not mounted.
-WERKBANK_RUNNER_TOKEN=
-
 # Dashboard
 DASHBOARD_PORT=8080
 AGENT_API_URL=http://localhost:3001

.gitea/workflows/ci.yml

@@ -29,13 +29,10 @@ env:
   CARGO_NET_RETRY: "10"
   CARGO_HTTP_MULTIPLEXING: "false"
 
-# Cancel superseded PR runs, but NEVER cancel main-branch runs — those build and
-# deploy per-service images, and cancelling one merge's deploy when the next
-# merge lands leaves a service un-deployed (as happened between two back-to-back
-# merges). So cancel-in-progress only for pull_request events.
+# Cancel in-progress runs for the same branch/PR
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  cancel-in-progress: true
 
 jobs:
   # ---------------------------------------------------------------------------
@@ -107,8 +104,6 @@ jobs:
         run: cargo clippy -p compliance-dashboard --features web --no-default-features -- -D warnings
       - name: Clippy (mcp)
         run: cargo clippy -p compliance-mcp -- -D warnings
-      - name: Clippy (werkbank-exec)
-        run: cargo clippy -p werkbank-exec -- -D warnings
 
       # Security audit
       - name: Security Audit
@@ -117,8 +112,8 @@ jobs:
           RUSTC_WRAPPER: ""
 
       # Tests (reuses compilation artifacts from clippy)
-      - name: Tests (core + agent + werkbank-exec)
-        run: cargo test -p compliance-core -p compliance-agent -p werkbank-exec --lib
+      - name: Tests (core + agent)
+        run: cargo test -p compliance-core -p compliance-agent --lib
       - name: Tests (dashboard server)
         run: cargo test -p compliance-dashboard --features server --no-default-features
       - name: Tests (dashboard web)
@@ -196,18 +191,13 @@ jobs:
       image: docker:27-cli
     steps:
       - name: Build, push and trigger orca redeploy
-        env:
-          # PAT for fetching the private tramiton-core git dependency during the
-          # image build (injected as a BuildKit secret, never baked into a layer).
-          TRAMITON_FETCH_TOKEN: ${{ secrets.TRAMITON_FETCH_TOKEN }}
         run: |
           apk add --no-cache git curl openssl
           git init && git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
           git fetch --depth=1 origin "${GITHUB_SHA}" && git checkout FETCH_HEAD
           IMAGE=registry.meghsakha.com/compliance-agent
           echo "${{ secrets.REGISTRY_PASSWORD }}" | docker login registry.meghsakha.com -u "${{ secrets.REGISTRY_USERNAME }}" --password-stdin
-          DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN \
-            -f Dockerfile.agent -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
+          docker build -f Dockerfile.agent -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
           docker push "$IMAGE:latest" && docker push "$IMAGE:${GITHUB_SHA}"
           PAYLOAD=$(printf '{"ref":"refs/heads/main","repository":{"full_name":"sharang/compliance-scanner-agent"},"head_commit":{"id":"%s","message":"deploy agent"}}' "${GITHUB_SHA}")
           SIG=$(printf '%s' "$PAYLOAD" | openssl dgst -sha256 -hmac "${{ secrets.ORCA_WEBHOOK_SECRET }}" | awk '{print $2}')
@@ -222,16 +212,13 @@ jobs:
       image: docker:27-cli
     steps:
       - name: Build, push and trigger orca redeploy
-        env:
-          TRAMITON_FETCH_TOKEN: ${{ secrets.TRAMITON_FETCH_TOKEN }}
         run: |
           apk add --no-cache git curl openssl
           git init && git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
           git fetch --depth=1 origin "${GITHUB_SHA}" && git checkout FETCH_HEAD
           IMAGE=registry.meghsakha.com/compliance-dashboard
           echo "${{ secrets.REGISTRY_PASSWORD }}" | docker login registry.meghsakha.com -u "${{ secrets.REGISTRY_USERNAME }}" --password-stdin
-          DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN \
-            -f Dockerfile.dashboard -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
+          docker build -f Dockerfile.dashboard -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
           docker push "$IMAGE:latest" && docker push "$IMAGE:${GITHUB_SHA}"
           PAYLOAD=$(printf '{"ref":"refs/heads/main","repository":{"full_name":"sharang/compliance-scanner-agent"},"head_commit":{"id":"%s","message":"deploy dashboard"}}' "${GITHUB_SHA}")
           SIG=$(printf '%s' "$PAYLOAD" | openssl dgst -sha256 -hmac "${{ secrets.ORCA_WEBHOOK_SECRET }}" | awk '{print $2}')
@@ -267,16 +254,13 @@ jobs:
       image: docker:27-cli
     steps:
       - name: Build, push and trigger orca redeploy
-        env:
-          TRAMITON_FETCH_TOKEN: ${{ secrets.TRAMITON_FETCH_TOKEN }}
         run: |
           apk add --no-cache git curl openssl
           git init && git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
           git fetch --depth=1 origin "${GITHUB_SHA}" && git checkout FETCH_HEAD
           IMAGE=registry.meghsakha.com/compliance-mcp
           echo "${{ secrets.REGISTRY_PASSWORD }}" | docker login registry.meghsakha.com -u "${{ secrets.REGISTRY_USERNAME }}" --password-stdin
-          DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN \
-            -f Dockerfile.mcp -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
+          docker build -f Dockerfile.mcp -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
           docker push "$IMAGE:latest" && docker push "$IMAGE:${GITHUB_SHA}"
           PAYLOAD=$(printf '{"ref":"refs/heads/main","repository":{"full_name":"sharang/compliance-scanner-agent"},"head_commit":{"id":"%s","message":"deploy mcp"}}' "${GITHUB_SHA}")
           SIG=$(printf '%s' "$PAYLOAD" | openssl dgst -sha256 -hmac "${{ secrets.ORCA_WEBHOOK_SECRET }}" | awk '{print $2}')

Cargo.lock

@@ -679,7 +679,6 @@ dependencies = [
  "rand 0.9.2",
  "regex",
  "reqwest",
- "roxmltree",
  "secrecy",
  "serde",
  "serde_json",
@@ -694,12 +693,9 @@ dependencies = [
  "tracing",
  "tracing-subscriber",
  "tramiton-core",
- "tramiton-repro",
- "tramiton-sbom",
  "urlencoding",
  "uuid",
  "walkdir",
- "werkbank-exec",
  "zip",
 ]
 
@@ -724,7 +720,6 @@ dependencies = [
  "sha2",
  "thiserror 2.0.18",
  "tokio",
- "toml",
  "tracing",
  "tracing-opentelemetry",
  "tracing-subscriber",
@@ -3772,15 +3767,6 @@ dependencies = [
  "syn",
 ]
 
-[[package]]
-name = "object"
-version = "0.36.7"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "62948e14d923ea95ea2c7c86c71013138b66525b86bdc08d2dcc262bdb497b87"
-dependencies = [
- "memchr",
-]
-
 [[package]]
 name = "octocrab"
 version = "0.44.1"
@@ -4631,12 +4617,6 @@ dependencies = [
  "syn",
 ]
 
-[[package]]
-name = "roxmltree"
-version = "0.20.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6c20b6793b5c2fa6553b250154b78d6d0db37e72700ae35fad9387a46f487c97"
-
 [[package]]
 name = "rust-stemmers"
 version = "1.2.0"
@@ -5224,7 +5204,7 @@ version = "0.8.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c1c97747dbf44bb1ca44a561ece23508e99cb592e862f22222dcf42f51d1e451"
 dependencies = [
- "heck 0.5.0",
+ "heck 0.4.1",
  "proc-macro2",
  "quote",
  "syn",
@@ -6159,8 +6139,8 @@ dependencies = [
 
 [[package]]
 name = "tramiton-core"
-version = "0.4.1"
-source = "git+ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git?tag=v0.4.1#ae4fc1376279f9edb9882605b20877335e7ba8ba"
+version = "0.4.0"
+source = "git+ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git?tag=v0.4.0#e3dc1bf7027a2f6d7b1fe43043d6dfa887ce4af3"
 dependencies = [
  "serde",
  "tempfile",
@@ -6169,34 +6149,6 @@ dependencies = [
  "walkdir",
 ]
 
-[[package]]
-name = "tramiton-repro"
-version = "0.4.1"
-source = "git+ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git?tag=v0.4.1#ae4fc1376279f9edb9882605b20877335e7ba8ba"
-dependencies = [
- "serde",
- "serde_json",
- "sha2",
- "tempfile",
- "thiserror 1.0.69",
- "toml",
- "tramiton-core",
- "walkdir",
-]
-
-[[package]]
-name = "tramiton-sbom"
-version = "0.4.1"
-source = "git+ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git?tag=v0.4.1#ae4fc1376279f9edb9882605b20877335e7ba8ba"
-dependencies = [
- "object",
- "serde",
- "serde_json",
- "sha2",
- "tramiton-core",
- "tramiton-repro",
-]
-
 [[package]]
 name = "tree-sitter"
 version = "0.24.7"
@@ -6715,25 +6667,6 @@ dependencies = [
  "rustls-pki-types",
 ]
 
-[[package]]
-name = "werkbank-exec"
-version = "0.1.0"
-dependencies = [
- "compliance-core",
- "compliance-dast",
- "futures-util",
- "hex",
- "regex",
- "reqwest",
- "secrecy",
- "sha2",
- "thiserror 2.0.18",
- "tokio",
- "tracing",
- "uuid",
- "walkdir",
-]
-
 [[package]]
 name = "which"
 version = "6.0.3"

Cargo.toml

@@ -7,7 +7,6 @@ members = [
     "compliance-dast",
     "compliance-mcp",
     "compliance-smoke",
-    "werkbank-exec",
 ]
 resolver = "2"
 
@@ -24,7 +23,7 @@ tracing = "0.1"
 tracing-subscriber = { version = "0.3", features = ["env-filter"] }
 chrono = { version = "0.4", features = ["serde"] }
 mongodb = { version = "3", features = ["rustls-tls", "compat-3-0-0"] }
-reqwest = { version = "0.12", features = ["json", "rustls-tls", "multipart", "cookies"], default-features = false }
+reqwest = { version = "0.12", features = ["json", "rustls-tls"], default-features = false }
 thiserror = "2"
 sha2 = "0.10"
 hex = "0.4"

Dockerfile.agent

@@ -2,22 +2,7 @@ FROM rust:1.94-bookworm AS builder
 
 WORKDIR /app
 COPY . .
-# compliance-agent depends on the private tramiton-core git repo. Authenticate
-# the fetch with a PAT passed as a BuildKit secret (never baked into a layer).
-# Build with: DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN ...
-RUN --mount=type=secret,id=tramiton_token \
-    if [ -s /run/secrets/tramiton_token ]; then \
-      git config --global \
-        url."https://sharang:$(cat /run/secrets/tramiton_token)@gitea.meghsakha.com/".insteadOf \
-        "ssh://git@gitea.meghsakha.com:22222/"; \
-    fi && \
-    CARGO_NET_GIT_FETCH_WITH_CLI=true cargo build --release -p compliance-agent
-
-# A throwaway stage that packs a real nix store (store paths + the validity DB)
-# into a compressed bootstrap tarball. Only the tarball is copied into the final
-# image, so we don't carry a raw /nix copy layer.
-FROM nixos/nix:latest AS nixseed
-RUN tar -C / -czf /nix-bootstrap.tar.gz nix
+RUN cargo build --release -p compliance-agent
 
 FROM debian:bookworm-slim
 RUN apt-get update && apt-get install -y ca-certificates libssl3 git curl python3 python3-pip npm golang-go php-cli && rm -rf /var/lib/apt/lists/*
@@ -46,30 +31,7 @@ RUN pip3 install --break-system-packages semgrep
 # Install ruff for Python linting
 RUN pip3 install --break-system-packages ruff
 
-# Real nix for the tramiton reproducible-build firmware SBOM.
-#
-# nix-portable's proot fallback can't run here: user namespaces are blocked by
-# the container's default seccomp/apparmor profile, and orca exposes no way to
-# relax it. So ship a *real* nix and disable its build sandbox
-# (`sandbox = false`) — a plain gcc/make firmware build needs no user namespace,
-# so it runs fine under the locked-down profile with no proot involved.
-#
-# The store is shipped as a bootstrap tarball and seeded onto /nix at first
-# start (see docker/agent-entrypoint.sh), so a persistent /nix volume survives
-# redeploys. A missing/broken nix just falls back to the analysis-only SBOM.
-COPY --from=nixseed /nix-bootstrap.tar.gz /opt/nix-bootstrap.tar.gz
-ENV PATH="/nix/var/nix/profiles/default/bin:${PATH}"
-RUN mkdir -p /etc/nix && printf '%s\n' \
-      'experimental-features = nix-command flakes' \
-      'sandbox = false' \
-      'build-users-group =' \
-      'substituters = https://cache.nixos.org' \
-      'trusted-public-keys = cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=' \
-      > /etc/nix/nix.conf
-
 COPY --from=builder /app/target/release/compliance-agent /usr/local/bin/compliance-agent
-COPY docker/agent-entrypoint.sh /usr/local/bin/agent-entrypoint.sh
-RUN chmod +x /usr/local/bin/agent-entrypoint.sh
 
 # Copy documentation for the help chat assistant
 COPY --from=builder /app/README.md /app/README.md
@@ -81,6 +43,5 @@ RUN mkdir -p /data/compliance-scanner/ssh
 
 EXPOSE 3001 3002
 
-# Seeds /nix (fresh volume) from the bootstrap tarball, then runs the agent.
-ENTRYPOINT ["/usr/local/bin/agent-entrypoint.sh"]
+ENTRYPOINT ["compliance-agent"]
 

Dockerfile.dashboard

@@ -7,16 +7,7 @@ ARG DOCS_URL=/docs
 WORKDIR /app
 COPY . .
 ENV DOCS_URL=${DOCS_URL}
-# compliance-agent (a workspace member) depends on the private tramiton-core git
-# repo, so the workspace resolve needs it even to build the dashboard.
-# Authenticate the fetch with a PAT passed as a BuildKit secret.
-RUN --mount=type=secret,id=tramiton_token \
-    if [ -s /run/secrets/tramiton_token ]; then \
-      git config --global \
-        url."https://sharang:$(cat /run/secrets/tramiton_token)@gitea.meghsakha.com/".insteadOf \
-        "ssh://git@gitea.meghsakha.com:22222/"; \
-    fi && \
-    CARGO_NET_GIT_FETCH_WITH_CLI=true dx build --release --package compliance-dashboard
+RUN dx build --release --package compliance-dashboard
 
 FROM debian:bookworm-slim
 RUN apt-get update && apt-get install -y ca-certificates libssl3 && rm -rf /var/lib/apt/lists/*

Dockerfile.mcp

@@ -2,16 +2,7 @@ FROM rust:1.94-bookworm AS builder
 
 WORKDIR /app
 COPY . .
-# compliance-agent (a workspace member) depends on the private tramiton-core git
-# repo, so the workspace resolve needs it even to build the mcp binary.
-# Authenticate the fetch with a PAT passed as a BuildKit secret.
-RUN --mount=type=secret,id=tramiton_token \
-    if [ -s /run/secrets/tramiton_token ]; then \
-      git config --global \
-        url."https://sharang:$(cat /run/secrets/tramiton_token)@gitea.meghsakha.com/".insteadOf \
-        "ssh://git@gitea.meghsakha.com:22222/"; \
-    fi && \
-    CARGO_NET_GIT_FETCH_WITH_CLI=true cargo build --release -p compliance-mcp
+RUN cargo build --release -p compliance-mcp
 
 FROM debian:bookworm-slim
 RUN apt-get update && apt-get install -y ca-certificates libssl3 && rm -rf /var/lib/apt/lists/*

compliance-agent/Cargo.toml

@@ -10,19 +10,11 @@ workspace = true
 compliance-core = { workspace = true, features = ["mongodb", "telemetry", "axum"] }
 compliance-graph = { path = "../compliance-graph" }
 compliance-dast = { path = "../compliance-dast" }
-# Shared dynamic-execution logic (soft-PLC provisioning + ICS probing), also
-# used by the Werkbank runner.
-werkbank-exec = { path = "../werkbank-exec" }
 # Native firmware build/target detection for bare-metal & RTOS artifacts.
 # Same-company IP, used directly (not via CLI) so the whole tramiton suite is
 # available to the onboarding classifier. NOTE: CI must be able to fetch this
 # private repo (see the git-auth step in .gitea/workflows/ci.yml).
-tramiton-core = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.1" }
-# tramiton-repro drives the reproducible build (NixBackend seal_and_build) that
-# yields a sealed lock; `libraries_from_inputs` is the analysis-only fallback.
-tramiton-repro = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.1" }
-# tramiton-sbom renders the bill of materials from a sealed lock (+ binary SCA).
-tramiton-sbom = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.1" }
+tramiton-core = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.0" }
 serde = { workspace = true }
 serde_json = { workspace = true }
 tokio = { workspace = true }
@@ -37,7 +29,7 @@ hex = { workspace = true }
 uuid = { workspace = true }
 secrecy = { workspace = true }
 regex = { workspace = true }
-axum = { version = "0.8", features = ["multipart"] }
+axum = "0.8"
 tower-http = { version = "0.6", features = ["cors", "trace", "set-header"] }
 git2 = "0.20"
 octocrab = "0.44"
@@ -45,8 +37,6 @@ tokio-cron-scheduler = "0.13"
 dotenvy = "0.15"
 hmac = "0.12"
 walkdir = "2"
-# Read-only XML tree parsing for PLCopen project files (POU extraction).
-roxmltree = "0.20"
 base64 = "0.22"
 urlencoding = "2"
 futures-util = "0.3"
@@ -68,5 +58,5 @@ tokio = { workspace = true }
 mongodb = { workspace = true }
 uuid = { workspace = true }
 secrecy = { workspace = true }
-axum = { version = "0.8", features = ["multipart"] }
+axum = "0.8"
 tower-http = { version = "0.6", features = ["cors"] }

compliance-agent/src/agent.rs

@@ -63,22 +63,11 @@ impl ComplianceAgent {
         let db = self.db_pool.for_tenant_id(tenant_id).await?;
         let orchestrator =
             PipelineOrchestrator::new(self.config.clone(), db, self.llm.clone(), self.http.clone());
-        orchestrator.run_target(repo_id, trigger).await
-    }
-
-    /// Alias for [`Self::run_scan`] — every scan runs the unified onboarded-target
-    /// pipeline. Kept as a distinct name for the `/targets/{id}/scan` endpoint's
-    /// intent.
-    pub async fn run_target_scan(
-        &self,
-        tenant_id: &str,
-        target_id: &str,
-        trigger: compliance_core::models::ScanTrigger,
-    ) -> Result<(), crate::error::AgentError> {
-        let db = self.db_pool.for_tenant_id(tenant_id).await?;
-        let orchestrator =
-            PipelineOrchestrator::new(self.config.clone(), db, self.llm.clone(), self.http.clone());
-        orchestrator.run_target(target_id, trigger).await
+        if self.config.unified_pipeline {
+            orchestrator.run_target(repo_id, trigger).await
+        } else {
+            orchestrator.run(repo_id, trigger).await
+        }
     }
 
     /// Run a PR review: scan the diff and post review comments.
@@ -91,19 +80,16 @@ impl ComplianceAgent {
         head_sha: &str,
     ) -> Result<(), crate::error::AgentError> {
         let db = self.db_pool.for_tenant_id(tenant_id).await?;
-        let oid = mongodb::bson::oid::ObjectId::parse_str(repo_id)
-            .map_err(|e| crate::error::AgentError::Other(e.to_string()))?;
-        let target = db
-            .onboarded_targets()
-            .find_one(mongodb::bson::doc! { "_id": oid })
+        let repo = db
+            .repositories()
+            .find_one(mongodb::bson::doc! {
+                "_id": mongodb::bson::oid::ObjectId::parse_str(repo_id)
+                    .map_err(|e| crate::error::AgentError::Other(e.to_string()))?
+            })
             .await?
             .ok_or_else(|| {
-                crate::error::AgentError::Other(format!("Target {repo_id} not found"))
+                crate::error::AgentError::Other(format!("Repository {repo_id} not found"))
             })?;
-        let code = target.code_artifact().ok_or_else(|| {
-            crate::error::AgentError::Other(format!("Target {repo_id} has no code artifact"))
-        })?;
-        let repo = crate::pipeline::repo_view::RepoView::from_target(&target, code);
 
         let orchestrator =
             PipelineOrchestrator::new(self.config.clone(), db, self.llm.clone(), self.http.clone());

compliance-agent/src/api/handlers/chat.rs

@@ -146,7 +146,7 @@ pub async fn build_embeddings(
     let agent_clone = (*agent).clone();
     tokio::spawn(async move {
         let repo = match db
-            .onboarded_targets()
+            .repositories()
             .find_one(doc! { "_id": mongodb::bson::oid::ObjectId::parse_str(&repo_id).ok() })
             .await
         {
@@ -194,22 +194,14 @@ pub async fn build_embeddings(
                 }
             };
 
-        let code = match repo.code_artifact() {
-            Some(c) => c,
-            None => {
-                tracing::error!("Target {repo_id} has no code artifact for embedding build");
-                return;
-            }
-        };
-        let view = crate::pipeline::repo_view::RepoView::from_target(&repo, code);
         let creds = crate::pipeline::git::RepoCredentials {
             ssh_key_path: Some(agent_clone.config.ssh_key_path.clone()),
-            auth_token: view.auth_token.clone(),
-            auth_username: view.auth_username.clone(),
+            auth_token: repo.auth_token.clone(),
+            auth_username: repo.auth_username.clone(),
         };
         let git_ops =
             crate::pipeline::git::GitOps::new(&agent_clone.config.git_clone_base_path, creds);
-        let repo_path = match git_ops.clone_or_fetch(&view.git_url, &view.name) {
+        let repo_path = match git_ops.clone_or_fetch(&repo.git_url, &repo.name) {
             Ok(p) => p,
             Err(e) => {
                 tracing::error!("Failed to clone repo for embedding build: {e}");

compliance-agent/src/api/handlers/graph.rs

@@ -255,7 +255,7 @@ pub async fn get_file_content(
 
     // Look up the repository to get repo name
     let repo = db
-        .onboarded_targets()
+        .repositories()
         .find_one(doc! { "_id": mongodb::bson::oid::ObjectId::parse_str(&repo_id).ok() })
         .await
         .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
@@ -317,7 +317,7 @@ pub async fn trigger_build(
     let agent_clone = (*agent).clone();
     tokio::spawn(async move {
         let repo = match db
-            .onboarded_targets()
+            .repositories()
             .find_one(doc! { "_id": mongodb::bson::oid::ObjectId::parse_str(&repo_id).ok() })
             .await
         {
@@ -328,22 +328,14 @@ pub async fn trigger_build(
             }
         };
 
-        let code = match repo.code_artifact() {
-            Some(c) => c,
-            None => {
-                tracing::error!("Target {repo_id} has no code artifact for graph build");
-                return;
-            }
-        };
-        let view = crate::pipeline::repo_view::RepoView::from_target(&repo, code);
         let creds = crate::pipeline::git::RepoCredentials {
             ssh_key_path: Some(agent_clone.config.ssh_key_path.clone()),
-            auth_token: view.auth_token.clone(),
-            auth_username: view.auth_username.clone(),
+            auth_token: repo.auth_token.clone(),
+            auth_username: repo.auth_username.clone(),
         };
         let git_ops =
             crate::pipeline::git::GitOps::new(&agent_clone.config.git_clone_base_path, creds);
-        let repo_path = match git_ops.clone_or_fetch(&view.git_url, &view.name) {
+        let repo_path = match git_ops.clone_or_fetch(&repo.git_url, &repo.name) {
             Ok(p) => p,
             Err(e) => {
                 tracing::error!("Failed to clone repo for graph build: {e}");

compliance-agent/src/api/handlers/health.rs

@@ -10,18 +10,6 @@ pub async fn health() -> Json<serde_json::Value> {
     Json(serde_json::json!({ "status": "ok" }))
 }
 
-/// GET /api/v1/settings/ssh-public-key — the agent's SSH deploy public key,
-/// for adding as a read-only deploy key on private git targets.
-#[tracing::instrument(skip_all)]
-pub async fn get_ssh_public_key(
-    axum::extract::Extension(agent): AgentExt,
-) -> Result<Json<serde_json::Value>, axum::http::StatusCode> {
-    let public_path = format!("{}.pub", agent.config.ssh_key_path);
-    let public_key =
-        std::fs::read_to_string(&public_path).map_err(|_| axum::http::StatusCode::NOT_FOUND)?;
-    Ok(Json(serde_json::json!({ "public_key": public_key.trim() })))
-}
-
 #[tracing::instrument(skip_all)]
 pub async fn stats_overview(
     axum::extract::Extension(agent): AgentExt,
@@ -31,7 +19,7 @@ pub async fn stats_overview(
     let db = &db;
 
     let total_repositories = db
-        .onboarded_targets()
+        .repositories()
         .count_documents(doc! {})
         .await
         .unwrap_or(0);

compliance-agent/src/api/handlers/mod.rs

@@ -12,14 +12,15 @@ pub mod notifications;
 pub mod onboarding;
 pub mod pentest_handlers;
 pub use pentest_handlers as pentest;
+pub mod repos;
 pub mod sbom;
 pub mod scans;
-pub mod werkbank_jobs;
 
 // Re-export all handler functions so routes.rs can use `handlers::function_name`
 pub use dto::*;
 pub use findings::*;
 pub use health::*;
 pub use issues::*;
+pub use repos::*;
 pub use sbom::*;
 pub use scans::*;

compliance-agent/src/api/handlers/onboarding.rs

@@ -5,7 +5,7 @@
 use std::collections::HashMap;
 use std::sync::Arc;
 
-use axum::extract::{Extension, Multipart, Path, Query};
+use axum::extract::{Extension, Path, Query};
 use axum::http::StatusCode;
 use axum::Json;
 use mongodb::bson::{doc, oid::ObjectId, to_bson};
@@ -75,9 +75,6 @@ pub struct UpdateTargetRequest {
     pub scan_config: Option<TargetScanConfig>,
     pub compliance_profile: Option<ComplianceProfile>,
     pub scan_schedule: Option<String>,
-    /// Replace the target's artifacts wholesale (used by the dashboard editor).
-    #[serde(default)]
-    pub artifacts: Option<Vec<ArtifactInput>>,
 }
 
 /// One applicable-scan option, serialized for the wizard.
@@ -217,13 +214,6 @@ pub async fn update_target(
     if let Some(ss) = req.scan_schedule {
         set.insert("scan_schedule", ss);
     }
-    if let Some(arts) = req.artifacts {
-        let built: Vec<Artifact> = arts.iter().map(ArtifactInput::build).collect();
-        set.insert(
-            "artifacts",
-            to_bson(&built).map_err(|_| StatusCode::BAD_REQUEST)?,
-        );
-    }
 
     db.onboarded_targets()
         .update_one(doc! { "_id": oid }, doc! { "$set": set })
@@ -246,116 +236,15 @@ pub async fn delete_target(
         .delete_one(doc! { "_id": oid })
         .await
         .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
-    // Cascade all data keyed by repo_id == target id (best-effort).
-    let db = &db;
-    let _ = db.findings().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db.sbom_entries().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db.scan_runs().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db.cve_alerts().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db
-        .tracker_issues()
-        .delete_many(doc! { "repo_id": &id })
-        .await;
-    let _ = db.graph_nodes().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db.graph_edges().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db.graph_builds().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db
-        .impact_analyses()
-        .delete_many(doc! { "repo_id": &id })
-        .await;
-    let _ = db
-        .code_embeddings()
-        .delete_many(doc! { "repo_id": &id })
-        .await;
-    let _ = db
-        .embedding_builds()
-        .delete_many(doc! { "repo_id": &id })
-        .await;
-
-    // DAST targets linked to this target, and all their downstream data.
-    if let Ok(mut cursor) = db.dast_targets().find(doc! { "repo_id": &id }).await {
-        use futures_util::StreamExt;
-        while let Some(Ok(dt)) = cursor.next().await {
-            let dast_target_id = dt.id.map(|oid| oid.to_hex()).unwrap_or_default();
-            if !dast_target_id.is_empty() {
-                cascade_delete_dast_target(db, &dast_target_id).await;
-            }
-        }
-    }
-
-    // Pentest sessions linked directly to this target (not via a DAST target).
-    if let Ok(mut cursor) = db.pentest_sessions().find(doc! { "repo_id": &id }).await {
-        use futures_util::StreamExt;
-        while let Some(Ok(session)) = cursor.next().await {
-            let session_id = session.id.map(|oid| oid.to_hex()).unwrap_or_default();
-            if !session_id.is_empty() {
-                let _ = db
-                    .attack_chain_nodes()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-                let _ = db
-                    .pentest_messages()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-                let _ = db
-                    .dast_findings()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-            }
-        }
-    }
-    let _ = db
-        .pentest_sessions()
-        .delete_many(doc! { "repo_id": &id })
-        .await;
-
+    // Cascade the collections keyed by repo_id == target id (best-effort).
+    let by_repo = doc! { "repo_id": &id };
+    let _ = db.findings().delete_many(by_repo.clone()).await;
+    let _ = db.scan_runs().delete_many(by_repo.clone()).await;
+    let _ = db.sbom_entries().delete_many(by_repo.clone()).await;
+    let _ = db.cve_alerts().delete_many(by_repo).await;
     Ok(Json(serde_json::json!({ "status": "deleted" })))
 }
 
-/// Delete a DAST target and everything downstream of it (pentest sessions +
-/// their attack chains / messages / findings, DAST scan runs + findings).
-async fn cascade_delete_dast_target(db: &crate::database::Database, target_id: &str) {
-    use futures_util::StreamExt;
-    if let Ok(mut cursor) = db
-        .pentest_sessions()
-        .find(doc! { "target_id": target_id })
-        .await
-    {
-        while let Some(Ok(session)) = cursor.next().await {
-            let session_id = session.id.map(|oid| oid.to_hex()).unwrap_or_default();
-            if !session_id.is_empty() {
-                let _ = db
-                    .attack_chain_nodes()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-                let _ = db
-                    .pentest_messages()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-                let _ = db
-                    .dast_findings()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-            }
-        }
-    }
-    let _ = db
-        .pentest_sessions()
-        .delete_many(doc! { "target_id": target_id })
-        .await;
-    let _ = db
-        .dast_findings()
-        .delete_many(doc! { "target_id": target_id })
-        .await;
-    let _ = db
-        .dast_scan_runs()
-        .delete_many(doc! { "target_id": target_id })
-        .await;
-    if let Ok(oid) = mongodb::bson::oid::ObjectId::parse_str(target_id) {
-        let _ = db.dast_targets().delete_one(doc! { "_id": oid }).await;
-    }
-}
-
 /// POST /api/v1/targets/{id}/artifacts — attach an artifact (by reference).
 #[tracing::instrument(skip_all, fields(target_id = %id))]
 pub async fn add_artifact(
@@ -377,116 +266,6 @@ pub async fn add_artifact(
     get_target(Extension(agent), tenant, Path(id)).await
 }
 
-/// POST /api/v1/targets/{id}/artifacts/upload — attach an artifact by uploading
-/// its file (PLC project, firmware image, source archive, mobile package). The
-/// bytes are written to the artifact blob store and referenced by `stored_path`,
-/// so ingest resolves them locally (no URL fetch).
-///
-/// Multipart fields: `file` (required), `kind` (required, snake_case
-/// `ArtifactKind`), `plc_format` (optional, for PLC projects).
-#[tracing::instrument(skip_all, fields(target_id = %id))]
-pub async fn upload_artifact(
-    Extension(agent): AgentExt,
-    tenant: TenantCtx,
-    Path(id): Path<String>,
-    mut multipart: Multipart,
-) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
-    let oid = parse_oid(&id)?;
-    let db = tenant_db(&agent, &tenant).await?;
-    if db
-        .onboarded_targets()
-        .find_one(doc! { "_id": oid })
-        .await
-        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
-        .is_none()
-    {
-        return Err(StatusCode::NOT_FOUND);
-    }
-
-    let mut kind: Option<ArtifactKind> = None;
-    let mut plc_format: Option<PlcFormat> = None;
-    let mut filename = String::from("upload.bin");
-    let mut bytes: Option<axum::body::Bytes> = None;
-
-    while let Some(field) = multipart
-        .next_field()
-        .await
-        .map_err(|_| StatusCode::BAD_REQUEST)?
-    {
-        match field.name().unwrap_or("") {
-            "kind" => {
-                let v = field.text().await.map_err(|_| StatusCode::BAD_REQUEST)?;
-                kind = parse_enum(&v);
-            }
-            "plc_format" => {
-                let v = field.text().await.map_err(|_| StatusCode::BAD_REQUEST)?;
-                plc_format = parse_enum(&v);
-            }
-            "file" => {
-                if let Some(fname) = field.file_name() {
-                    filename = fname.to_string();
-                }
-                bytes = Some(field.bytes().await.map_err(|_| StatusCode::BAD_REQUEST)?);
-            }
-            _ => {}
-        }
-    }
-
-    let (Some(kind), Some(bytes)) = (kind, bytes) else {
-        return Err(StatusCode::BAD_REQUEST);
-    };
-
-    // Store the uploaded bytes under the artifact blob store.
-    let safe_name: String = filename
-        .chars()
-        .map(|c| {
-            if c.is_ascii_alphanumeric() || matches!(c, '.' | '-' | '_') {
-                c
-            } else {
-                '_'
-            }
-        })
-        .collect();
-    let dir = std::path::Path::new(&agent.config.artifact_store_base_path)
-        .join("uploads")
-        .join(&id);
-    std::fs::create_dir_all(&dir).map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
-    let dest = dir.join(format!("{}_{safe_name}", uuid::Uuid::new_v4()));
-    std::fs::write(&dest, bytes.as_ref()).map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
-
-    // Build the artifact for this kind, referencing the stored file.
-    let mut artifact = match kind {
-        ArtifactKind::PlcProject => Artifact::plc_project(
-            filename.clone(),
-            plc_format.unwrap_or(PlcFormat::PlcopenXml),
-        ),
-        ArtifactKind::FirmwareImage => Artifact::firmware_image(filename.clone()),
-        ArtifactKind::SourceArchive => Artifact::source_archive(filename.clone()),
-        ArtifactKind::MobilePackage => Artifact::mobile_package(filename.clone()),
-        // Non-file kinds (git repo, live URL, container ref, text) use the JSON
-        // add-artifact endpoint, not upload.
-        _ => return Err(StatusCode::BAD_REQUEST),
-    };
-    artifact.stored_path = Some(dest.to_string_lossy().to_string());
-    artifact.size_bytes = Some(bytes.len() as u64);
-
-    let artifact_bson = to_bson(&artifact).map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
-    db.onboarded_targets()
-        .update_one(
-            doc! { "_id": oid },
-            doc! { "$push": { "artifacts": artifact_bson }, "$set": { "updated_at": mongodb::bson::DateTime::now() } },
-        )
-        .await
-        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
-
-    get_target(Extension(agent), tenant, Path(id)).await
-}
-
-/// Deserialize a snake_case enum value from a plain string.
-fn parse_enum<T: for<'de> Deserialize<'de>>(s: &str) -> Option<T> {
-    serde_json::from_value(serde_json::Value::String(s.to_string())).ok()
-}
-
 /// GET /api/v1/targets/{id}/applicable-scans — the scan-applicability matrix.
 #[tracing::instrument(skip_all, fields(target_id = %id))]
 pub async fn applicable_scans_for_target(
@@ -569,46 +348,3 @@ pub async fn detect_target(
         page: None,
     }))
 }
-
-/// POST /api/v1/targets/{id}/scan — trigger a scan for the target.
-///
-/// Dispatches to the unified pipeline when `UNIFIED_PIPELINE` is set (else the
-/// legacy path). Runs in the background and returns immediately.
-#[tracing::instrument(skip_all, fields(target_id = %id))]
-pub async fn trigger_target_scan(
-    Extension(agent): AgentExt,
-    tenant: TenantCtx,
-    Path(id): Path<String>,
-) -> Result<Json<serde_json::Value>, StatusCode> {
-    let oid = parse_oid(&id)?;
-    let db = tenant_db(&agent, &tenant).await?;
-    // 404 if the target doesn't exist for this tenant.
-    if db
-        .onboarded_targets()
-        .find_one(doc! { "_id": oid })
-        .await
-        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
-        .is_none()
-    {
-        return Err(StatusCode::NOT_FOUND);
-    }
-
-    let agent_clone = (*agent).clone();
-    let tenant_id = tenant.0.tenant_id.clone();
-    tokio::spawn(async move {
-        // Always the unified target pipeline — this endpoint is about an
-        // onboarded target by construction, independent of the global
-        // `unified_pipeline` transition flag used by the legacy paths.
-        if let Err(e) = agent_clone
-            .run_target_scan(
-                &tenant_id,
-                &id,
-                compliance_core::models::ScanTrigger::Manual,
-            )
-            .await
-        {
-            tracing::error!("Manual target scan failed for {id}: {e}");
-        }
-    });
-    Ok(Json(serde_json::json!({ "status": "scan_triggered" })))
-}

compliance-agent/src/api/handlers/pentest_handlers/session.rs

@@ -113,14 +113,14 @@ pub async fn create_session(
         session.config = Some(config.clone());
         session.repo_id = target.repo_id.clone();
 
-        // Resolve repo_id (target id) from git_repo_url if provided
+        // Resolve repo_id from git_repo_url if provided
         if let Some(ref git_url) = config.git_repo_url {
-            if let Ok(Some(target)) = db
-                .onboarded_targets()
-                .find_one(doc! { "artifacts.source_ref": git_url })
+            if let Ok(Some(repo)) = db
+                .repositories()
+                .find_one(doc! { "git_url": git_url })
                 .await
             {
-                session.repo_id = target.id.map(|oid| oid.to_hex());
+                session.repo_id = repo.id.map(|oid| oid.to_hex());
             }
         }
 
@@ -380,20 +380,17 @@ pub async fn lookup_repo(
 ) -> Result<Json<ApiResponse<serde_json::Value>>, StatusCode> {
     let db = tenant_db(&agent, &tenant).await?;
     let repo = db
-        .onboarded_targets()
-        .find_one(doc! { "artifacts.source_ref": &params.url })
+        .repositories()
+        .find_one(doc! { "git_url": &params.url })
         .await
         .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
 
     let data = match repo {
-        Some(r) => {
-            let git = r.code_artifact().and_then(|c| c.git.as_ref());
-            serde_json::json!({
-                "name": r.name,
-                "default_branch": git.map(|g| g.default_branch.clone()),
-                "last_scanned_commit": git.and_then(|g| g.last_scanned_commit.clone()),
-            })
-        }
+        Some(r) => serde_json::json!({
+            "name": r.name,
+            "default_branch": r.default_branch,
+            "last_scanned_commit": r.last_scanned_commit,
+        }),
         None => serde_json::Value::Null,
     };
 

compliance-agent/src/api/handlers/repos.rs

@@ -0,0 +1,339 @@
+use axum::extract::{Extension, Path, Query};
+use axum::http::StatusCode;
+use axum::Json;
+use mongodb::bson::doc;
+
+use super::dto::*;
+use compliance_core::models::*;
+use compliance_core::tenant_ctx::TenantCtx;
+
+#[tracing::instrument(skip_all)]
+pub async fn list_repositories(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Query(params): Query<PaginationParams>,
+) -> ApiResult<Vec<TrackedRepository>> {
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
+    let skip = (params.page.saturating_sub(1)) * params.limit as u64;
+    let total = db
+        .repositories()
+        .count_documents(doc! {})
+        .await
+        .unwrap_or(0);
+
+    let repos = match db
+        .repositories()
+        .find(doc! {})
+        .skip(skip)
+        .limit(params.limit)
+        .await
+    {
+        Ok(cursor) => collect_cursor_async(cursor).await,
+        Err(e) => {
+            tracing::warn!("Failed to fetch repositories: {e}");
+            Vec::new()
+        }
+    };
+
+    Ok(Json(ApiResponse {
+        data: repos,
+        total: Some(total),
+        page: Some(params.page),
+    }))
+}
+
+#[tracing::instrument(skip_all)]
+pub async fn add_repository(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Json(req): Json<AddRepositoryRequest>,
+) -> Result<Json<ApiResponse<TrackedRepository>>, (StatusCode, String)> {
+    // Validate repository access before saving
+    let creds = crate::pipeline::git::RepoCredentials {
+        ssh_key_path: Some(agent.config.ssh_key_path.clone()),
+        auth_token: req.auth_token.clone(),
+        auth_username: req.auth_username.clone(),
+    };
+
+    if let Err(e) = crate::pipeline::git::GitOps::test_access(&req.git_url, &creds) {
+        return Err((
+            StatusCode::BAD_REQUEST,
+            format!("Cannot access repository: {e}"),
+        ));
+    }
+
+    let mut repo = TrackedRepository::new(req.name, req.git_url);
+    repo.default_branch = req.default_branch;
+    repo.auth_token = req.auth_token;
+    repo.auth_username = req.auth_username;
+    repo.tracker_type = req.tracker_type;
+    repo.tracker_owner = req.tracker_owner;
+    repo.tracker_repo = req.tracker_repo;
+    repo.tracker_token = req.tracker_token;
+    repo.scan_schedule = req.scan_schedule;
+
+    let db = tenant_db(&agent, &tenant)
+        .await
+        .map_err(|s| (s, "failed to acquire tenant database".to_string()))?;
+    db.repositories().insert_one(&repo).await.map_err(|_| {
+        (
+            StatusCode::CONFLICT,
+            "Repository already exists".to_string(),
+        )
+    })?;
+
+    Ok(Json(ApiResponse {
+        data: repo,
+        total: None,
+        page: None,
+    }))
+}
+
+#[tracing::instrument(skip_all, fields(repo_id = %id))]
+pub async fn update_repository(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+    Json(req): Json<UpdateRepositoryRequest>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
+
+    let mut set_doc = doc! { "updated_at": mongodb::bson::DateTime::now() };
+
+    if let Some(name) = &req.name {
+        set_doc.insert("name", name);
+    }
+    if let Some(branch) = &req.default_branch {
+        set_doc.insert("default_branch", branch);
+    }
+    if let Some(token) = &req.auth_token {
+        set_doc.insert("auth_token", token);
+    }
+    if let Some(username) = &req.auth_username {
+        set_doc.insert("auth_username", username);
+    }
+    if let Some(tracker_type) = &req.tracker_type {
+        set_doc.insert("tracker_type", tracker_type.to_string());
+    }
+    if let Some(owner) = &req.tracker_owner {
+        set_doc.insert("tracker_owner", owner);
+    }
+    if let Some(repo) = &req.tracker_repo {
+        set_doc.insert("tracker_repo", repo);
+    }
+    if let Some(token) = &req.tracker_token {
+        set_doc.insert("tracker_token", token);
+    }
+    if let Some(schedule) = &req.scan_schedule {
+        set_doc.insert("scan_schedule", schedule);
+    }
+
+    let result = db
+        .repositories()
+        .update_one(doc! { "_id": oid }, doc! { "$set": set_doc })
+        .await
+        .map_err(|e| {
+            tracing::warn!("Failed to update repository: {e}");
+            StatusCode::INTERNAL_SERVER_ERROR
+        })?;
+
+    if result.matched_count == 0 {
+        return Err(StatusCode::NOT_FOUND);
+    }
+
+    Ok(Json(serde_json::json!({ "status": "updated" })))
+}
+
+#[tracing::instrument(skip_all)]
+pub async fn get_ssh_public_key(
+    Extension(agent): AgentExt,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let public_path = format!("{}.pub", agent.config.ssh_key_path);
+    let public_key = std::fs::read_to_string(&public_path).map_err(|_| StatusCode::NOT_FOUND)?;
+    Ok(Json(serde_json::json!({ "public_key": public_key.trim() })))
+}
+
+#[tracing::instrument(skip_all, fields(repo_id = %id))]
+pub async fn trigger_scan(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let agent_clone = (*agent).clone();
+    let tenant_id = tenant.0.tenant_id.clone();
+    tokio::spawn(async move {
+        if let Err(e) = agent_clone
+            .run_scan(&tenant_id, &id, ScanTrigger::Manual)
+            .await
+        {
+            tracing::error!("Manual scan failed for {id}: {e}");
+        }
+    });
+
+    Ok(Json(serde_json::json!({ "status": "scan_triggered" })))
+}
+
+/// Return the webhook secret for a repository (used by dashboard to display it)
+pub async fn get_webhook_config(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    let repo = db
+        .repositories()
+        .find_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
+        .ok_or(StatusCode::NOT_FOUND)?;
+
+    let tracker_type = repo
+        .tracker_type
+        .as_ref()
+        .map(|t| t.to_string())
+        .unwrap_or_else(|| "gitea".to_string());
+
+    Ok(Json(serde_json::json!({
+        "webhook_secret": repo.webhook_secret,
+        "tracker_type": tracker_type,
+    })))
+}
+
+#[tracing::instrument(skip_all, fields(repo_id = %id))]
+pub async fn delete_repository(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    let db = &db;
+
+    // Delete the repository
+    let result = db
+        .repositories()
+        .delete_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+
+    if result.deleted_count == 0 {
+        return Err(StatusCode::NOT_FOUND);
+    }
+
+    // Cascade delete all related data
+    let _ = db.findings().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db.sbom_entries().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db.scan_runs().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db.cve_alerts().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db
+        .tracker_issues()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+    let _ = db.graph_nodes().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db.graph_edges().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db.graph_builds().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db
+        .impact_analyses()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+    let _ = db
+        .code_embeddings()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+    let _ = db
+        .embedding_builds()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+
+    // Cascade delete DAST targets linked to this repo, and all their downstream data
+    // (scan runs, findings, pentest sessions, attack chains, messages)
+    if let Ok(mut cursor) = db.dast_targets().find(doc! { "repo_id": &id }).await {
+        use futures_util::StreamExt;
+        while let Some(Ok(target)) = cursor.next().await {
+            let target_id = target.id.map(|oid| oid.to_hex()).unwrap_or_default();
+            if !target_id.is_empty() {
+                cascade_delete_dast_target(db, &target_id).await;
+            }
+        }
+    }
+
+    // Also delete pentest sessions linked directly to this repo (not via target)
+    if let Ok(mut cursor) = db.pentest_sessions().find(doc! { "repo_id": &id }).await {
+        use futures_util::StreamExt;
+        while let Some(Ok(session)) = cursor.next().await {
+            let session_id = session.id.map(|oid| oid.to_hex()).unwrap_or_default();
+            if !session_id.is_empty() {
+                let _ = db
+                    .attack_chain_nodes()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                let _ = db
+                    .pentest_messages()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                // Delete DAST findings produced by this session
+                let _ = db
+                    .dast_findings()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+            }
+        }
+    }
+    let _ = db
+        .pentest_sessions()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+
+    Ok(Json(serde_json::json!({ "status": "deleted" })))
+}
+
+/// Cascade-delete a DAST target and all its downstream data.
+async fn cascade_delete_dast_target(db: &crate::database::Database, target_id: &str) {
+    // Delete pentest sessions for this target (and their attack chains + messages)
+    if let Ok(mut cursor) = db
+        .pentest_sessions()
+        .find(doc! { "target_id": target_id })
+        .await
+    {
+        use futures_util::StreamExt;
+        while let Some(Ok(session)) = cursor.next().await {
+            let session_id = session.id.map(|oid| oid.to_hex()).unwrap_or_default();
+            if !session_id.is_empty() {
+                let _ = db
+                    .attack_chain_nodes()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                let _ = db
+                    .pentest_messages()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                let _ = db
+                    .dast_findings()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+            }
+        }
+    }
+    let _ = db
+        .pentest_sessions()
+        .delete_many(doc! { "target_id": target_id })
+        .await;
+
+    // Delete DAST scan runs and their findings
+    let _ = db
+        .dast_findings()
+        .delete_many(doc! { "target_id": target_id })
+        .await;
+    let _ = db
+        .dast_scan_runs()
+        .delete_many(doc! { "target_id": target_id })
+        .await;
+
+    // Delete the target itself
+    if let Ok(oid) = mongodb::bson::oid::ObjectId::parse_str(target_id) {
+        let _ = db.dast_targets().delete_one(doc! { "_id": oid }).await;
+    }
+}

compliance-agent/src/api/handlers/sbom.rs

@@ -282,7 +282,7 @@ pub async fn license_summary(
             }
         })
         .collect();
-    summaries.sort_by_key(|s| std::cmp::Reverse(s.count));
+    summaries.sort_by(|a, b| b.count.cmp(&a.count));
 
     Ok(Json(ApiResponse {
         data: summaries,

compliance-agent/src/api/handlers/werkbank_jobs.rs

@@ -1,289 +0,0 @@
-//! Werkbank runner endpoints (`/api/v1/werkbank/jobs/*`).
-//!
-//! The pull API a Werkbank runner talks to: lease a job, heartbeat while it runs,
-//! and post the result back. Machine auth is a **static bearer token**
-//! (`WERKBANK_RUNNER_TOKEN`) — not a Keycloak JWT, because a runner acts across
-//! tenants (each request names its `tenant`). Routes are only mounted when the
-//! token is configured; with none set they don't exist (404).
-//!
-//! On completion the runner's findings are persisted against the job's target,
-//! so a job run by a remote runner lands the same findings an in-process run
-//! would (WB-05, the control-plane cut-over).
-
-use axum::extract::{Extension, Path, Request};
-use axum::http::{header, StatusCode};
-use axum::middleware::Next;
-use axum::response::{IntoResponse, Response};
-use axum::Json;
-use mongodb::bson::{doc, oid::ObjectId};
-use secrecy::ExposeSecret;
-use serde::{Deserialize, Serialize};
-use std::time::Duration;
-
-use compliance_core::models::werkbank::{
-    CompleteRequest, CompleteResponse, HeartbeatRequest, InputRef, Job, JobResult, LeaseRequest,
-};
-use compliance_core::models::ArtifactKind;
-
-use super::dto::AgentExt;
-use crate::database::Database;
-use crate::werkbank::JobQueue;
-
-/// Gate the runner endpoints behind the static runner bearer token.
-pub async fn require_runner_token(
-    Extension(agent): AgentExt,
-    request: Request,
-    next: Next,
-) -> Response {
-    let Some(expected) = agent.config.werkbank_runner_token.as_ref() else {
-        return (StatusCode::NOT_FOUND, "werkbank runner API disabled").into_response();
-    };
-    let presented = request
-        .headers()
-        .get(header::AUTHORIZATION)
-        .and_then(|v| v.to_str().ok())
-        .and_then(|s| s.strip_prefix("Bearer "))
-        .map(str::trim)
-        .filter(|s| !s.is_empty());
-    let Some(presented) = presented else {
-        return (StatusCode::UNAUTHORIZED, "Missing bearer token").into_response();
-    };
-    if !constant_time_eq(presented, expected.expose_secret()) {
-        return (StatusCode::UNAUTHORIZED, "Invalid runner token").into_response();
-    }
-    next.run(request).await
-}
-
-/// `POST /api/v1/werkbank/jobs/lease` — lease the oldest runnable job, or `204`.
-#[tracing::instrument(skip_all, fields(tenant = %req.tenant, runner = %req.runner_id))]
-pub async fn lease(
-    Extension(agent): AgentExt,
-    Json(req): Json<LeaseRequest>,
-) -> Result<Response, StatusCode> {
-    let queue = JobQueue::new(&tenant_db(&agent, &req.tenant).await?);
-    let leased = queue
-        .lease(
-            &req.runner_id,
-            req.executor,
-            &req.labels,
-            Duration::from_secs(req.lease_ttl_secs),
-            chrono::Utc::now(),
-        )
-        .await
-        .map_err(internal)?;
-    Ok(match leased {
-        Some(job) => Json(job).into_response(),
-        None => StatusCode::NO_CONTENT.into_response(),
-    })
-}
-
-/// `POST /api/v1/werkbank/jobs/heartbeat` — extend the lease; `409` if it's lost.
-#[tracing::instrument(skip_all, fields(tenant = %req.tenant, job = %req.job_id))]
-pub async fn heartbeat(
-    Extension(agent): AgentExt,
-    Json(req): Json<HeartbeatRequest>,
-) -> Result<Response, StatusCode> {
-    let queue = JobQueue::new(&tenant_db(&agent, &req.tenant).await?);
-    let ack = queue
-        .heartbeat(
-            &req.job_id,
-            &req.lease_token,
-            Duration::from_secs(req.lease_ttl_secs),
-            chrono::Utc::now(),
-        )
-        .await
-        .map_err(internal)?;
-    Ok(match ack {
-        Some(ack) => Json(ack).into_response(),
-        // Lease lost — the runner should abandon the job.
-        None => StatusCode::CONFLICT.into_response(),
-    })
-}
-
-/// `POST /api/v1/werkbank/jobs/complete` — record the result and persist findings.
-#[tracing::instrument(skip_all, fields(tenant = %req.tenant, job = %req.job_id))]
-pub async fn complete(
-    Extension(agent): AgentExt,
-    Json(req): Json<CompleteRequest>,
-) -> Result<Json<CompleteResponse>, StatusCode> {
-    let db = tenant_db(&agent, &req.tenant).await?;
-    let queue = JobQueue::new(&db);
-    let now = chrono::Utc::now();
-    let recorded = queue
-        .complete(&req.job_id, &req.lease_token, &req.result, now)
-        .await
-        .map_err(internal)?;
-
-    // Only persist findings for the run that actually recorded the result, so a
-    // duplicate/late completion can't double-insert.
-    if recorded {
-        if let Some(record) = queue.get(&req.job_id).await.map_err(internal)? {
-            persist_findings(&db, &record.job.target_id, &req.result).await;
-        }
-    }
-    Ok(Json(CompleteResponse { recorded }))
-}
-
-/// `GET /api/v1/werkbank/artifacts/{hash}` — serve a content-addressed blob (the
-/// program a runner needs to load). The hash is validated against traversal by
-/// [`crate::ingest::blob::read_blob`]; a runner fetches this for a job's `blob`
-/// input.
-#[tracing::instrument(skip_all, fields(hash = %hash))]
-pub async fn serve_artifact(
-    Extension(agent): AgentExt,
-    Path(hash): Path<String>,
-) -> Result<Response, StatusCode> {
-    let base = std::path::Path::new(&agent.config.artifact_store_base_path);
-    match crate::ingest::blob::read_blob(base, &hash) {
-        Ok(bytes) => {
-            Ok(([(header::CONTENT_TYPE, "application/octet-stream")], bytes).into_response())
-        }
-        Err(_) => Err(StatusCode::NOT_FOUND),
-    }
-}
-
-/// Enqueue a `plc-provision` job for a target: extract its control-logic program,
-/// stash it as a content-addressed blob (which the runner fetches via
-/// [`serve_artifact`]), and queue the job. This is the control-plane "enqueue"
-/// half of the loop — a runner then leases it, provisions, and posts results.
-#[derive(Debug, Deserialize)]
-pub struct EnqueueRequest {
-    /// The tenant whose queue to enqueue into.
-    pub tenant: String,
-    /// The onboarded target to test.
-    pub target_id: String,
-}
-
-/// The enqueued job's id.
-#[derive(Debug, Serialize)]
-pub struct EnqueueResponse {
-    /// The new job id.
-    pub job_id: String,
-    /// Whether this call inserted it (false = already queued).
-    pub enqueued: bool,
-}
-
-#[tracing::instrument(skip_all, fields(tenant = %req.tenant, target = %req.target_id))]
-pub async fn enqueue(
-    Extension(agent): AgentExt,
-    Json(req): Json<EnqueueRequest>,
-) -> Result<Json<EnqueueResponse>, StatusCode> {
-    let db = tenant_db(&agent, &req.tenant).await?;
-    let oid = ObjectId::parse_str(&req.target_id).map_err(|_| StatusCode::BAD_REQUEST)?;
-    let target = db
-        .onboarded_targets()
-        .find_one(doc! { "_id": oid })
-        .await
-        .map_err(internal)?
-        .ok_or(StatusCode::NOT_FOUND)?;
-
-    // Extract the control-logic program from the target's PLC-source artifacts
-    // (same selection as the in-process PLC scan).
-    let ctx = crate::ingest::IngestContext::from_config(&agent.config, &req.target_id);
-    let ingest_set = crate::ingest::ingest_all(&target, &ctx).map_err(internal)?;
-    let program = target
-        .artifacts
-        .iter()
-        .filter(|a| {
-            matches!(
-                a.kind,
-                ArtifactKind::PlcProject | ArtifactKind::GitRepo | ArtifactKind::SourceArchive
-            )
-        })
-        .find_map(|a| {
-            let path = ingest_set
-                .get(&a.id)
-                .and_then(|ia| ia.working_path.clone())?;
-            werkbank_exec::plc::extract_program(&path)
-        })
-        .ok_or(StatusCode::UNPROCESSABLE_ENTITY)?;
-
-    // Stash the program source so the runner can fetch it by hash.
-    let base = std::path::Path::new(&agent.config.artifact_store_base_path);
-    let hash =
-        crate::ingest::blob::store_bytes(base, program.source.as_bytes()).map_err(internal)?;
-
-    let job_id = format!("job_{}", uuid::Uuid::new_v4().simple());
-    let job = Job::plc_provision(
-        &job_id,
-        &req.tenant,
-        &req.target_id,
-        InputRef::blob(hash),
-        agent.config.plc_runtime.max_lifetime_secs,
-    );
-    let enqueued = JobQueue::new(&db)
-        .enqueue(job, chrono::Utc::now())
-        .await
-        .map_err(internal)?;
-    Ok(Json(EnqueueResponse { job_id, enqueued }))
-}
-
-/// Persist a job result's findings against its target: general findings
-/// (dedup'd by fingerprint) and DAST findings. Best-effort — a persistence hiccup
-/// is logged, not surfaced to the runner (its result is already recorded).
-async fn persist_findings(db: &Database, target_id: &str, result: &JobResult) {
-    for finding in &result.findings {
-        let exists = db
-            .findings()
-            .find_one(doc! { "fingerprint": &finding.fingerprint })
-            .await
-            .ok()
-            .flatten()
-            .is_some();
-        if !exists {
-            if let Err(e) = db.findings().insert_one(finding).await {
-                tracing::warn!(target_id, error = %e, "werkbank: persist finding failed");
-            }
-        }
-    }
-    for finding in &result.dast_findings {
-        if let Err(e) = db.dast_findings().insert_one(finding).await {
-            tracing::warn!(target_id, error = %e, "werkbank: persist DAST finding failed");
-        }
-    }
-    tracing::info!(
-        target_id,
-        findings = result.findings.len(),
-        dast = result.dast_findings.len(),
-        "werkbank: persisted runner results"
-    );
-}
-
-/// Resolve the tenant-scoped database for a request.
-async fn tenant_db(
-    agent: &crate::agent::ComplianceAgent,
-    tenant: &str,
-) -> Result<Database, StatusCode> {
-    agent.db_pool.for_tenant_id(tenant).await.map_err(internal)
-}
-
-/// Map any internal error to a 500.
-fn internal<E: std::fmt::Display>(e: E) -> StatusCode {
-    tracing::error!("werkbank endpoint error: {e}");
-    StatusCode::INTERNAL_SERVER_ERROR
-}
-
-/// Length-checked, constant-time-ish token comparison.
-fn constant_time_eq(a: &str, b: &str) -> bool {
-    if a.len() != b.len() {
-        return false;
-    }
-    let mut diff = 0u8;
-    for (x, y) in a.bytes().zip(b.bytes()) {
-        diff |= x ^ y;
-    }
-    diff == 0
-}
-
-#[cfg(test)]
-mod tests {
-    use super::constant_time_eq;
-
-    #[test]
-    fn token_compare() {
-        assert!(constant_time_eq("secret", "secret"));
-        assert!(!constant_time_eq("secret", "secrex"));
-        assert!(!constant_time_eq("secret", "secretx"));
-        assert!(!constant_time_eq("", "x"));
-    }
-}

compliance-agent/src/api/routes.rs

@@ -11,6 +11,20 @@ pub fn build_router() -> Router {
             "/api/v1/settings/ssh-public-key",
             get(handlers::get_ssh_public_key),
         )
+        .route("/api/v1/repositories", get(handlers::list_repositories))
+        .route("/api/v1/repositories", post(handlers::add_repository))
+        .route(
+            "/api/v1/repositories/{id}/scan",
+            post(handlers::trigger_scan),
+        )
+        .route(
+            "/api/v1/repositories/{id}",
+            delete(handlers::delete_repository).patch(handlers::update_repository),
+        )
+        .route(
+            "/api/v1/repositories/{id}/webhook-config",
+            get(handlers::get_webhook_config),
+        )
         // Unified onboarding targets (#131).
         .route(
             "/api/v1/targets",
@@ -26,10 +40,6 @@ pub fn build_router() -> Router {
             "/api/v1/targets/{id}/artifacts",
             post(handlers::onboarding::add_artifact),
         )
-        .route(
-            "/api/v1/targets/{id}/artifacts/upload",
-            post(handlers::onboarding::upload_artifact),
-        )
         .route(
             "/api/v1/targets/{id}/applicable-scans",
             get(handlers::onboarding::applicable_scans_for_target),
@@ -38,10 +48,6 @@ pub fn build_router() -> Router {
             "/api/v1/targets/{id}/detect",
             post(handlers::onboarding::detect_target),
         )
-        .route(
-            "/api/v1/targets/{id}/scan",
-            post(handlers::onboarding::trigger_target_scan),
-        )
         .route("/api/v1/findings", get(handlers::list_findings))
         .route("/api/v1/findings/{id}", get(handlers::get_finding))
         .route(

compliance-agent/src/api/server.rs

@@ -1,10 +1,10 @@
 use std::sync::Arc;
 
-use axum::extract::{DefaultBodyLimit, Request};
+use axum::extract::Request;
 use axum::http::HeaderValue;
 use axum::middleware::Next;
 use axum::response::Response;
-use axum::routing::{delete, get, post};
+use axum::routing::{delete, get};
 use axum::{middleware, Extension, Router};
 use tokio::sync::RwLock;
 use tower_http::cors::CorsLayer;
@@ -72,46 +72,8 @@ pub async fn start_api_server(agent: ComplianceAgent, port: u16) -> Result<(), A
         Router::new()
     };
 
-    // Werkbank runner API. Like admin, only mounted when its bearer token is
-    // configured; runners authenticate with WERKBANK_RUNNER_TOKEN (not a JWT).
-    let werkbank_router: Router = if agent.config.werkbank_runner_token.is_some() {
-        tracing::info!(
-            "Werkbank runner API enabled — /api/v1/werkbank/jobs/* behind WERKBANK_RUNNER_TOKEN"
-        );
-        Router::new()
-            .route(
-                "/api/v1/werkbank/jobs/lease",
-                post(handlers::werkbank_jobs::lease),
-            )
-            .route(
-                "/api/v1/werkbank/jobs/heartbeat",
-                post(handlers::werkbank_jobs::heartbeat),
-            )
-            .route(
-                "/api/v1/werkbank/jobs/complete",
-                post(handlers::werkbank_jobs::complete),
-            )
-            .route(
-                "/api/v1/werkbank/jobs/enqueue",
-                post(handlers::werkbank_jobs::enqueue),
-            )
-            .route(
-                "/api/v1/werkbank/artifacts/{hash}",
-                get(handlers::werkbank_jobs::serve_artifact),
-            )
-            .layer(middleware::from_fn(
-                handlers::werkbank_jobs::require_runner_token,
-            ))
-    } else {
-        Router::new()
-    };
-
     let mut app = routes::build_router()
         .merge(admin_router)
-        .merge(werkbank_router)
-        // Allow large artifact uploads (PLC .projectarchive, firmware images,
-        // mobile packages) — axum's default request-body limit is only 2 MiB.
-        .layer(DefaultBodyLimit::max(512 * 1024 * 1024))
         .layer(Extension(Arc::new(agent.clone())))
         .layer(CorsLayer::permissive())
         .layer(TraceLayer::new_for_http())

compliance-agent/src/config.rs

@@ -1,4 +1,3 @@
-use compliance_core::config::PlcRuntimeConfig;
 use compliance_core::AgentConfig;
 use secrecy::SecretString;
 
@@ -48,6 +47,9 @@ pub fn load_config() -> Result<AgentConfig, AgentError> {
             .unwrap_or_else(|| "/tmp/compliance-scanner/repos".to_string()),
         artifact_store_base_path: env_var_opt("ARTIFACT_STORE_BASE_PATH")
             .unwrap_or_else(|| "/data/compliance-scanner/artifacts".to_string()),
+        unified_pipeline: env_var_opt("UNIFIED_PIPELINE")
+            .map(|v| v == "1" || v.eq_ignore_ascii_case("true"))
+            .unwrap_or(false),
         ssh_key_path: env_var_opt("SSH_KEY_PATH")
             .unwrap_or_else(|| "/data/compliance-scanner/ssh/id_ed25519".to_string()),
         keycloak_url: env_var_opt("KEYCLOAK_URL"),
@@ -64,29 +66,5 @@ pub fn load_config() -> Result<AgentConfig, AgentError> {
         pentest_imap_password: env_secret_opt("PENTEST_IMAP_PASSWORD"),
         admin_api_token: env_secret_opt("ADMIN_API_TOKEN"),
         tenant_registry_url: env_var_opt("TENANT_REGISTRY_URL"),
-        plc_runtime: load_plc_runtime_config(),
-        werkbank_runner_token: env_secret_opt("WERKBANK_RUNNER_TOKEN"),
     })
 }
-
-/// Build the ephemeral soft-PLC provisioning config from the environment,
-/// falling back to [`PlcRuntimeConfig::default`] for any unset knob. Disabled
-/// unless `PLC_RUNTIME_ENABLED` is truthy — it requires Docker access.
-fn load_plc_runtime_config() -> PlcRuntimeConfig {
-    let d = PlcRuntimeConfig::default();
-    PlcRuntimeConfig {
-        enabled: env_var_opt("PLC_RUNTIME_ENABLED")
-            .map(|v| v == "1" || v.eq_ignore_ascii_case("true"))
-            .unwrap_or(d.enabled),
-        image: env_var_opt("PLC_RUNTIME_IMAGE").unwrap_or(d.image),
-        network: env_var_opt("PLC_RUNTIME_NETWORK").unwrap_or(d.network),
-        memory: env_var_opt("PLC_RUNTIME_MEMORY").unwrap_or(d.memory),
-        cpus: env_var_opt("PLC_RUNTIME_CPUS").unwrap_or(d.cpus),
-        max_lifetime_secs: env_var_opt("PLC_RUNTIME_MAX_LIFETIME_SECS")
-            .and_then(|v| v.parse().ok())
-            .unwrap_or(d.max_lifetime_secs),
-        openplc_user: env_var_opt("PLC_RUNTIME_OPENPLC_USER").unwrap_or(d.openplc_user),
-        openplc_password: env_secret_opt("PLC_RUNTIME_OPENPLC_PASSWORD")
-            .unwrap_or(d.openplc_password),
-    }
-}

compliance-agent/src/controls/mod.rs

@@ -1,10 +0,0 @@
-//! Controls corpus providers.
-//!
-//! Implementations of [`compliance_core::traits::ControlsProvider`] that supply
-//! the control corpus the mapping engine assesses findings against. Currently:
-//! [`OscalControlsProvider`], which pulls breakpilot-compliance's OSCAL catalog
-//! and snapshots it locally.
-
-mod oscal_provider;
-
-pub use oscal_provider::OscalControlsProvider;

compliance-agent/src/controls/oscal_provider.rs

@@ -1,233 +0,0 @@
-//! Pull + snapshot [`ControlsProvider`] backed by breakpilot-compliance's OSCAL
-//! catalog export.
-//!
-//! Fetches `GET {base}/api/compliance/v1/oscal/catalog?framework=<fw>`, snapshots
-//! the exact bytes to disk (so scans are deterministic and keep working offline /
-//! on-prem), and maps the catalog into the corpus controls the mapping engine
-//! consumes. The producer owns the catalog; we own the assessment — this is the
-//! ingest half of the loop.
-
-use std::path::PathBuf;
-
-use secrecy::{ExposeSecret, SecretString};
-
-use compliance_core::error::CoreError;
-use compliance_core::models::onboarding::ComplianceFramework;
-use compliance_core::models::oscal::OscalDocument;
-use compliance_core::traits::{Control, ControlQuery, ControlsProvider};
-
-/// A [`ControlsProvider`] that pulls the OSCAL catalog from breakpilot-compliance
-/// and snapshots it locally for deterministic / offline reuse.
-pub struct OscalControlsProvider {
-    http: reqwest::Client,
-    base_url: String,
-    token: Option<SecretString>,
-    snapshot_dir: PathBuf,
-}
-
-impl OscalControlsProvider {
-    /// Create a provider. `base_url` is the breakpilot-compliance root (e.g.
-    /// `http://backend-compliance:8002`); `snapshot_dir` is where catalog
-    /// snapshots are written so a later scan can reuse them without the network.
-    pub fn new(
-        http: reqwest::Client,
-        base_url: impl Into<String>,
-        token: Option<SecretString>,
-        snapshot_dir: impl Into<PathBuf>,
-    ) -> Self {
-        Self {
-            http,
-            base_url: base_url.into(),
-            token,
-            snapshot_dir: snapshot_dir.into(),
-        }
-    }
-
-    fn catalog_url(&self, framework: ComplianceFramework) -> String {
-        format!(
-            "{}/api/compliance/v1/oscal/catalog?framework={framework}",
-            self.base_url.trim_end_matches('/')
-        )
-    }
-
-    fn snapshot_path(&self, framework: ComplianceFramework) -> PathBuf {
-        self.snapshot_dir
-            .join(format!("oscal-catalog-{framework}.json"))
-    }
-
-    /// Fetch the raw catalog bytes for a framework over HTTP.
-    async fn fetch_raw(&self, framework: ComplianceFramework) -> Result<Vec<u8>, CoreError> {
-        let mut req = self.http.get(self.catalog_url(framework));
-        if let Some(token) = &self.token {
-            req = req.bearer_auth(token.expose_secret());
-        }
-        let resp = req
-            .send()
-            .await
-            .map_err(|e| CoreError::Http(e.to_string()))?;
-        if !resp.status().is_success() {
-            return Err(CoreError::Http(format!(
-                "catalog fetch for {framework} returned HTTP {}",
-                resp.status()
-            )));
-        }
-        resp.bytes()
-            .await
-            .map(|b| b.to_vec())
-            .map_err(|e| CoreError::Http(e.to_string()))
-    }
-
-    /// Write a catalog snapshot atomically (temp file + rename).
-    async fn write_snapshot(
-        &self,
-        framework: ComplianceFramework,
-        raw: &[u8],
-    ) -> Result<(), CoreError> {
-        tokio::fs::create_dir_all(&self.snapshot_dir).await?;
-        let path = self.snapshot_path(framework);
-        let tmp = path.with_extension("json.tmp");
-        tokio::fs::write(&tmp, raw).await?;
-        tokio::fs::rename(&tmp, &path).await?;
-        Ok(())
-    }
-
-    /// Read a previously written snapshot, if one exists.
-    async fn read_snapshot(
-        &self,
-        framework: ComplianceFramework,
-    ) -> Result<Option<OscalDocument>, CoreError> {
-        match tokio::fs::read(self.snapshot_path(framework)).await {
-            Ok(raw) => Ok(Some(serde_json::from_slice(&raw)?)),
-            Err(e) if e.kind() == std::io::ErrorKind::NotFound => Ok(None),
-            Err(e) => Err(e.into()),
-        }
-    }
-
-    /// Load the catalog for a framework: fetch fresh + snapshot the exact bytes;
-    /// on network failure, fall back to the last snapshot so scans still run.
-    pub async fn load(&self, framework: ComplianceFramework) -> Result<OscalDocument, CoreError> {
-        match self.fetch_raw(framework).await {
-            Ok(raw) => {
-                let doc: OscalDocument = serde_json::from_slice(&raw)?;
-                if let Err(e) = self.write_snapshot(framework, &raw).await {
-                    tracing::warn!(%framework, error = %e, "failed to write OSCAL snapshot");
-                }
-                Ok(doc)
-            }
-            Err(fetch_err) => match self.read_snapshot(framework).await? {
-                Some(doc) => {
-                    tracing::warn!(
-                        %framework, error = %fetch_err,
-                        "OSCAL catalog fetch failed; falling back to snapshot"
-                    );
-                    Ok(doc)
-                }
-                None => Err(fetch_err),
-            },
-        }
-    }
-}
-
-/// Order controls whose title/text mention the query context first (stable), then
-/// truncate to the requested limit. Naive relevance — refined when the assessment
-/// layer lands.
-fn rank_and_truncate(mut controls: Vec<Control>, context: &str, limit: usize) -> Vec<Control> {
-    if !context.is_empty() {
-        let needle = context.to_lowercase();
-        controls.sort_by_key(|c| {
-            let hit =
-                c.title.to_lowercase().contains(&needle) || c.text.to_lowercase().contains(&needle);
-            u8::from(!hit)
-        });
-    }
-    controls.truncate(limit);
-    controls
-}
-
-impl ControlsProvider for OscalControlsProvider {
-    fn name(&self) -> &str {
-        "breakpilot-oscal"
-    }
-
-    async fn controls(&self, query: &ControlQuery<'_>) -> Result<Vec<Control>, CoreError> {
-        let mut out: Vec<Control> = Vec::new();
-        for &framework in query.frameworks {
-            match self.load(framework).await {
-                Ok(doc) => out.extend(doc.to_controls()),
-                Err(e) => {
-                    tracing::warn!(%framework, error = %e, "skipping framework: catalog unavailable")
-                }
-            }
-        }
-        Ok(rank_and_truncate(out, query.context, query.limit))
-    }
-}
-
-#[cfg(test)]
-#[allow(clippy::unwrap_used)]
-mod tests {
-    use super::*;
-
-    const MINI_CATALOG: &str = r#"{"catalog":{"uuid":"u","metadata":{"title":"T",
-      "version":"1.0.0","oscal-version":"1.1.2","props":[{"name":"framework","value":"cra"}]},
-      "groups":[{"id":"g","title":"G","controls":[{"id":"cra-ai-1","title":"MFA",
-      "props":[],"parts":[{"name":"statement","prose":"require mfa"}]}]}]}}"#;
-
-    fn provider(dir: &std::path::Path) -> OscalControlsProvider {
-        OscalControlsProvider::new(reqwest::Client::new(), "http://unused/", None, dir)
-    }
-
-    #[test]
-    fn builds_catalog_url_and_snapshot_path() {
-        let p = provider(std::path::Path::new("/snap"));
-        assert_eq!(
-            p.catalog_url(ComplianceFramework::Cra),
-            "http://unused/api/compliance/v1/oscal/catalog?framework=cra"
-        );
-        assert_eq!(
-            p.snapshot_path(ComplianceFramework::Cra),
-            std::path::Path::new("/snap/oscal-catalog-cra.json")
-        );
-    }
-
-    #[test]
-    fn ranks_context_hits_first_then_truncates() {
-        let mk = |id: &str, title: &str| Control {
-            id: id.into(),
-            framework: ComplianceFramework::Cra,
-            title: title.into(),
-            text: String::new(),
-            source: None,
-        };
-        let controls = vec![
-            mk("a", "logging policy"),
-            mk("b", "multi-factor auth"),
-            mk("c", "backup"),
-        ];
-        let ranked = rank_and_truncate(controls, "auth", 2);
-        assert_eq!(ranked.len(), 2);
-        assert_eq!(ranked[0].id, "b"); // the "auth" hit floats to the top
-    }
-
-    #[tokio::test]
-    async fn snapshot_round_trip_and_offline_fallback() {
-        let dir = std::env::temp_dir().join(format!("oscal-test-{}", uuid::Uuid::new_v4()));
-        let p = provider(&dir);
-        assert!(p
-            .read_snapshot(ComplianceFramework::Cra)
-            .await
-            .unwrap()
-            .is_none());
-        p.write_snapshot(ComplianceFramework::Cra, MINI_CATALOG.as_bytes())
-            .await
-            .unwrap();
-        let doc = p
-            .read_snapshot(ComplianceFramework::Cra)
-            .await
-            .unwrap()
-            .unwrap();
-        assert_eq!(doc.to_controls().len(), 1);
-        assert_eq!(doc.framework(), Some(ComplianceFramework::Cra));
-        let _ = std::fs::remove_dir_all(&dir);
-    }
-}

compliance-agent/src/database.rs

@@ -249,6 +249,16 @@ impl Database {
     }
 
     pub async fn ensure_indexes(&self) -> Result<(), AgentError> {
+        // repositories: unique git_url
+        self.repositories()
+            .create_index(
+                IndexModel::builder()
+                    .keys(doc! { "git_url": 1 })
+                    .options(IndexOptions::builder().unique(true).build())
+                    .build(),
+            )
+            .await?;
+
         // findings: unique fingerprint
         self.findings()
             .create_index(
@@ -465,38 +475,14 @@ impl Database {
             )
             .await?;
 
-        // werkbank_jobs: unique job id (idempotent enqueue by job id)
-        self.werkbank_jobs()
-            .create_index(
-                IndexModel::builder()
-                    .keys(doc! { "job.id": 1 })
-                    .options(IndexOptions::builder().unique(true).build())
-                    .build(),
-            )
-            .await?;
-
-        // werkbank_jobs: lease query — oldest queued job for an executor
-        self.werkbank_jobs()
-            .create_index(
-                IndexModel::builder()
-                    .keys(doc! { "status": 1, "job.executor": 1, "created_at": 1 })
-                    .build(),
-            )
-            .await?;
-
-        // werkbank_jobs: visibility-timeout sweep of expired leases
-        self.werkbank_jobs()
-            .create_index(
-                IndexModel::builder()
-                    .keys(doc! { "status": 1, "lease_expires_at": 1 })
-                    .build(),
-            )
-            .await?;
-
         tracing::info!("Database indexes ensured");
         Ok(())
     }
 
+    pub fn repositories(&self) -> Collection<TrackedRepository> {
+        self.inner.collection("repositories")
+    }
+
     pub fn findings(&self) -> Collection<Finding> {
         self.inner.collection("findings")
     }
@@ -591,12 +577,6 @@ impl Database {
         self.inner.collection("pentest_messages")
     }
 
-    /// The Werkbank job queue (WB-02): declarative dynamic-execution jobs the
-    /// control plane enqueues and runners lease.
-    pub fn werkbank_jobs(&self) -> Collection<compliance_core::models::werkbank::JobRecord> {
-        self.inner.collection("werkbank_jobs")
-    }
-
     #[allow(dead_code)]
     pub fn raw_collection(&self, name: &str) -> Collection<mongodb::bson::Document> {
         self.inner.collection(name)

compliance-agent/src/error.rs

@@ -27,9 +27,6 @@ pub enum AgentError {
     #[error("Configuration error: {0}")]
     Config(String),
 
-    #[error("Dynamic-execution error: {0}")]
-    Exec(#[from] werkbank_exec::ExecError),
-
     #[error("{0}")]
     Other(String),
 }

compliance-agent/src/ingest/blob.rs

@@ -32,30 +32,6 @@ pub fn hash_file(path: &Path) -> Result<(String, u64), AgentError> {
     Ok((hex::encode(hasher.finalize()), total))
 }
 
-/// Store raw bytes in the content-addressed blob store under `base`, returning
-/// the SHA-256 digest. Used to stash a small derived artifact (e.g. the extracted
-/// PLC program source) so a Werkbank runner can fetch it by hash. Idempotent.
-pub fn store_bytes(base: &Path, bytes: &[u8]) -> Result<String, AgentError> {
-    let sha = hex::encode(Sha256::digest(bytes));
-    let dir = base.join("blobs").join(&sha[0..2]);
-    fs::create_dir_all(&dir)?;
-    let dest = dir.join(&sha);
-    if !dest.exists() {
-        fs::write(&dest, bytes)?;
-    }
-    Ok(sha)
-}
-
-/// Read a blob's bytes by its SHA-256 digest. Rejects a non-hex/wrong-length hash
-/// so a request can't traverse outside the blob store.
-pub fn read_blob(base: &Path, sha: &str) -> Result<Vec<u8>, AgentError> {
-    if sha.len() != 64 || !sha.bytes().all(|b| b.is_ascii_hexdigit()) {
-        return Err(AgentError::Other(format!("invalid content hash '{sha}'")));
-    }
-    let path = base.join("blobs").join(&sha[0..2]).join(sha);
-    Ok(fs::read(path)?)
-}
-
 /// Copy `src` into the content-addressed blob store under `base`, returning the
 /// stored path. Idempotent: an already-present blob is not rewritten.
 pub fn store_file(base: &Path, src: &Path, sha: &str) -> Result<PathBuf, AgentError> {

compliance-agent/src/ingest/mod.rs

@@ -6,7 +6,7 @@
 //! is also the reconciliation key against sibling products (a firmware sha256
 //! matches tramiton's `Artifact.sha256`).
 
-pub(crate) mod blob;
+mod blob;
 
 use std::collections::HashMap;
 use std::path::{Path, PathBuf};
@@ -162,27 +162,14 @@ fn ingest_blob(
         match blob::extract_zip(&stored, &dest) {
             Ok(()) => dest,
             Err(e) => {
-                // Not a zip container — this is a single uploaded file (e.g. a
-                // `.st`/`.xml` PLC project or a `.tar.gz`). The content-addressed
-                // blob has no extension, so materialize it into a working dir
-                // under its original name; extension-based scanners (PLC) can then
-                // discover it and report a readable path.
+                // Not a zip (e.g. a tar.gz source archive) — keep the blob and
+                // note it so later stages can decide what to do.
                 facts.push(DetectedFact::new(
                     "archive_unextracted",
                     e.to_string(),
                     "ingest",
                 ));
-                match materialize_single(&stored, &dest, &blob_file_name(artifact)) {
-                    Ok(dir) => dir,
-                    Err(copy_err) => {
-                        facts.push(DetectedFact::new(
-                            "materialize_failed",
-                            copy_err.to_string(),
-                            "ingest",
-                        ));
-                        stored.clone()
-                    }
-                }
+                stored.clone()
             }
         }
     } else {
@@ -199,27 +186,6 @@ fn ingest_blob(
     })
 }
 
-/// Copy a stored blob into `dest`/`name`, returning `dest`. Used when an
-/// "extractable" artifact turns out to be a single file rather than an archive.
-fn materialize_single(stored: &Path, dest: &Path, name: &str) -> Result<PathBuf, AgentError> {
-    std::fs::create_dir_all(dest)?;
-    std::fs::copy(stored, dest.join(name))?;
-    Ok(dest.to_path_buf())
-}
-
-/// A safe, single-segment file name for an artifact, preserving the original
-/// extension so scanners can identify it. Derives from `source_ref` (the
-/// uploaded/original file name); `file_name` strips any directory components,
-/// so this is traversal-safe. Falls back to the artifact id.
-fn blob_file_name(artifact: &Artifact) -> String {
-    Path::new(&artifact.source_ref)
-        .file_name()
-        .and_then(|n| n.to_str())
-        .map(str::to_string)
-        .filter(|s| !s.is_empty())
-        .unwrap_or_else(|| format!("artifact-{}", artifact.id))
-}
-
 /// An artifact with no on-disk form: record a single fact, no hash/path.
 fn metadata_only(artifact: &Artifact, fact: DetectedFact) -> IngestedArtifact {
     IngestedArtifact {
@@ -365,52 +331,4 @@ mod tests {
         assert_eq!(creds.ssh_key_path.as_deref(), Some("/default/ssh/key"));
         assert!(creds.auth_token.is_none());
     }
-
-    /// A single uploaded PLC file (not an archive) must land in a working dir
-    /// under its original name so the PLC scanner can discover it by extension
-    /// and report a readable path — the demo's upload → scan path.
-    #[test]
-    fn single_uploaded_plc_file_is_materialized_and_scannable() {
-        use compliance_core::models::PlcFormat;
-
-        let scratch = Scratch::new();
-        let store = scratch.0.join("store");
-        // Simulate the upload handler: bytes written to an `uploads/` path,
-        // `source_ref` carrying the original (clean) file name.
-        let uploads = scratch.0.join("uploads");
-        std::fs::create_dir_all(&uploads).expect("mkdir uploads");
-        let uploaded = uploads.join("a1b2c3_pump_station.st");
-        std::fs::write(
-            &uploaded,
-            "PROGRAM P\nVAR\n  ApiKey : STRING := 'sk-live-1234';\nEND_VAR\nEND_PROGRAM\n",
-        )
-        .expect("write st");
-
-        let mut artifact = Artifact::plc_project("pump_station.st", PlcFormat::StructuredText);
-        artifact.stored_path = Some(uploaded.to_string_lossy().to_string());
-
-        let ctx = ctx_for(&store, "t-plc");
-        let out = ingest_artifact(&artifact, &ctx).expect("ingest");
-
-        // Working path is a directory (not the extensionless blob) holding the
-        // file under its original name.
-        let wp = out.working_path.expect("working path");
-        assert!(wp.is_dir(), "expected a working dir, got {wp:?}");
-        assert!(wp.join("pump_station.st").is_file());
-
-        // The PLC scanner finds the hardcoded credential and reports a clean path.
-        let findings = crate::pipeline::plc::analyze_tree(&wp, "t-plc");
-        assert!(
-            !findings.is_empty(),
-            "scanner should flag the uploaded file"
-        );
-        assert!(findings
-            .iter()
-            .any(|f| f.rule_id.as_deref() == Some("plc-hardcoded-credential")));
-        assert_eq!(
-            findings[0].file_path.as_deref(),
-            Some("pump_station.st"),
-            "finding should reference the original file name"
-        );
-    }
 }

compliance-agent/src/lib.rs

@@ -4,11 +4,11 @@ pub mod agent;
 pub mod api;
 pub mod classify;
 pub mod config;
-pub mod controls;
 pub mod database;
 pub mod error;
 pub mod ingest;
 pub mod llm;
+pub mod migrate;
 pub mod pentest;
 pub mod pipeline;
 pub mod rag;
@@ -17,4 +17,3 @@ pub mod ssh;
 #[allow(dead_code)]
 pub mod trackers;
 pub mod webhooks;
-pub mod werkbank;

compliance-agent/src/main.rs

@@ -1,4 +1,50 @@
-use compliance_agent::{agent, api, config, database, scheduler, ssh, webhooks};
+use compliance_agent::{agent, api, config, database, migrate, scheduler, ssh, webhooks};
+
+/// Run the `migrate onboarding` subcommand and exit. Backfills (or reverts) the
+/// unified `onboarded_targets` collection per tenant.
+///
+/// Usage: `compliance-agent migrate onboarding [--all | --tenant <id>] [--dry-run] [--revert]`
+async fn run_migration(
+    args: &[String],
+    pool: &database::DatabasePool,
+) -> Result<(), compliance_agent::error::AgentError> {
+    if args.get(2).map(String::as_str) != Some("onboarding") {
+        eprintln!(
+            "usage: compliance-agent migrate onboarding [--all | --tenant <id>] [--dry-run] [--revert]"
+        );
+        std::process::exit(2);
+    }
+    let has = |flag: &str| args.iter().any(|a| a == flag);
+    let dry_run = has("--dry-run");
+    let revert = has("--revert");
+    let tenant = args
+        .iter()
+        .position(|a| a == "--tenant")
+        .and_then(|i| args.get(i + 1))
+        .cloned();
+
+    let tenants: Vec<String> = if has("--all") {
+        pool.list_tenant_ids().await?
+    } else if let Some(t) = tenant {
+        vec![t]
+    } else {
+        eprintln!("specify --all or --tenant <id>");
+        std::process::exit(2);
+    };
+
+    for tenant_id in tenants {
+        let db = pool.for_tenant_id(&tenant_id).await?;
+        if revert {
+            migrate::onboarding::revert(&db).await?;
+            println!("[{tenant_id}] reverted onboarding backfill");
+        } else {
+            let report = migrate::onboarding::backfill_onboarded_targets(&db, dry_run).await?;
+            let prefix = if dry_run { "(dry-run) " } else { "" };
+            println!("[{tenant_id}] {prefix}{report:?}");
+        }
+    }
+    Ok(())
+}
 
 #[tokio::main]
 async fn main() -> Result<(), Box<dyn std::error::Error>> {
@@ -31,6 +77,13 @@ async fn main() -> Result<(), Box<dyn std::error::Error>> {
     let db_pool =
         database::DatabasePool::connect(&config.mongodb_uri, &config.mongodb_database).await?;
 
+    // One-shot subcommands run and exit without starting the servers.
+    let args: Vec<String> = std::env::args().collect();
+    if args.get(1).map(String::as_str) == Some("migrate") {
+        run_migration(&args, &db_pool).await?;
+        return Ok(());
+    }
+
     let agent = agent::ComplianceAgent::new(config.clone(), db_pool);
 
     tracing::info!("Starting scheduler...");

compliance-agent/src/migrate/mod.rs

@@ -0,0 +1,8 @@
+//! One-time data migrations.
+//!
+//! Currently just the onboarding backfill ([`onboarding`]), which folds the
+//! legacy `repositories` and `dast_targets` collections into the unified
+//! `onboarded_targets` collection, preserving `_id` so every downstream record
+//! keyed by `repo_id` / `target_id` keeps resolving.
+
+pub mod onboarding;

compliance-agent/src/migrate/onboarding.rs

@@ -0,0 +1,406 @@
+//! Backfill: legacy `repositories` + `dast_targets` → `onboarded_targets`.
+//!
+//! The transforms here are **id-preserving**: an [`OnboardedTarget`] keeps the
+//! same `_id` as the `TrackedRepository` / `DastTarget` it came from, so every
+//! downstream collection keyed by that hex id (findings, sbom, scan_runs,
+//! graph, dast_*, pentest_*) keeps resolving with zero row rewrites, and
+//! existing webhook URLs keep working. The mapping functions are pure and unit
+//! tested; the DB orchestration (idempotent per-tenant backfill + revert) is a
+//! thin driver over them.
+
+use compliance_core::models::{
+    Artifact, ArtifactKind, DastTarget, DastTargetType, GitArtifactConfig, IssueTrackerConfig,
+    OnboardedTarget, TargetType, TrackedRepository, WebArtifactConfig,
+};
+use futures_util::TryStreamExt;
+use mongodb::bson::{doc, Document};
+
+use crate::database::Database;
+use crate::error::AgentError;
+
+/// Marker id in `schema_migrations` recording that the backfill has run.
+const MIGRATION_MARKER: &str = "onboarding_backfill_v1";
+
+/// Summary of a backfill run.
+#[derive(Debug, Clone, Default, PartialEq, Eq)]
+pub struct MigrationReport {
+    /// Repositories turned into onboarded targets.
+    pub repos_migrated: u64,
+    /// DAST targets folded into an existing (repo-linked) target as a LiveUrl.
+    pub dast_targets_folded: u64,
+    /// DAST targets with no repo link, migrated as standalone targets.
+    pub dast_targets_standalone: u64,
+    /// Records skipped because a target with that `_id` already existed.
+    pub skipped_existing: u64,
+}
+
+/// Map a legacy `DastTargetType` to a unified [`TargetType`]. REST/GraphQL APIs
+/// are backend services; a browser app is a web app.
+fn target_type_for_dast(kind: &DastTargetType) -> TargetType {
+    match kind {
+        DastTargetType::WebApp => TargetType::WebApp,
+        DastTargetType::RestApi | DastTargetType::GraphQl => TargetType::BackendService,
+    }
+}
+
+/// Build the LiveUrl artifact for a DAST target (its base URL + crawl config +
+/// auth). Shared by fold-in and standalone migration.
+pub fn dast_to_artifact(dast: &DastTarget) -> Artifact {
+    let mut artifact = Artifact::live_url(dast.base_url.clone());
+    artifact.web = Some(WebArtifactConfig {
+        target_kind: dast.target_type.clone(),
+        excluded_paths: dast.excluded_paths.clone(),
+        max_crawl_depth: dast.max_crawl_depth,
+        rate_limit: dast.rate_limit,
+        allow_destructive: dast.allow_destructive,
+    });
+    artifact.auth = dast.auth_config.clone().map(Into::into);
+    artifact
+}
+
+/// Map a `TrackedRepository` to an onboarded target, preserving `_id`. The git
+/// remote becomes a `GitRepo` artifact carrying the repo's branch, watermark,
+/// and auth; tracker config folds into `scan_config`.
+///
+/// `target_type` is a safe default (`BackendService`) — the classifier can
+/// refine it later; `classification` is left `None` (unconfirmed).
+pub fn repo_to_target(repo: &TrackedRepository) -> OnboardedTarget {
+    let mut target = OnboardedTarget::new(repo.name.clone(), TargetType::BackendService);
+    target.id = repo.id;
+
+    let mut artifact = Artifact::git_repo(repo.git_url.clone(), repo.default_branch.clone());
+    artifact.git = Some(GitArtifactConfig {
+        default_branch: repo.default_branch.clone(),
+        last_scanned_commit: repo.last_scanned_commit.clone(),
+        local_path: repo.local_path.clone(),
+    });
+    if repo.auth_token.is_some() || repo.auth_username.is_some() {
+        artifact.auth = Some(compliance_core::models::ArtifactAuth {
+            method: "token".to_string(),
+            username: repo.auth_username.clone(),
+            secret: repo.auth_token.clone(),
+            ..Default::default()
+        });
+    }
+    target.artifacts.push(artifact);
+
+    if repo.tracker_type.is_some() {
+        target.scan_config.issue_tracker = Some(IssueTrackerConfig {
+            tracker_type: repo.tracker_type.clone(),
+            owner: repo.tracker_owner.clone(),
+            repo: repo.tracker_repo.clone(),
+            token: repo.tracker_token.clone(),
+        });
+    }
+
+    target.scan_schedule = repo.scan_schedule.clone();
+    target.webhook_enabled = repo.webhook_enabled;
+    target.webhook_secret = repo.webhook_secret.clone();
+    target.findings_count = repo.findings_count;
+    target.created_at = repo.created_at;
+    target.updated_at = repo.updated_at;
+    target
+}
+
+/// Append a DAST target's LiveUrl artifact onto an existing (repo-derived)
+/// target. If the repo default was `BackendService` but the DAST target is a
+/// browser web app, promote the type to `WebApp`.
+pub fn fold_dast_into_target(target: &mut OnboardedTarget, dast: &DastTarget) {
+    if matches!(dast.target_type, DastTargetType::WebApp)
+        && target.target_type == TargetType::BackendService
+    {
+        target.target_type = TargetType::WebApp;
+    }
+    if !target.has(ArtifactKind::LiveUrl) {
+        target.artifacts.push(dast_to_artifact(dast));
+    }
+}
+
+/// Map a repo-less DAST target to a standalone onboarded target, preserving `_id`.
+pub fn dast_to_standalone_target(dast: &DastTarget) -> OnboardedTarget {
+    let mut target =
+        OnboardedTarget::new(dast.name.clone(), target_type_for_dast(&dast.target_type));
+    target.id = dast.id;
+    target.artifacts.push(dast_to_artifact(dast));
+    target.created_at = dast.created_at;
+    target.updated_at = dast.updated_at;
+    target
+}
+
+/// Whether the onboarding backfill has already been applied to this database.
+pub async fn already_applied(db: &Database) -> Result<bool, AgentError> {
+    let found = db
+        .collection_named::<Document>("schema_migrations")
+        .find_one(doc! { "_id": MIGRATION_MARKER })
+        .await?;
+    Ok(found.is_some())
+}
+
+/// Backfill `onboarded_targets` from `repositories` + `dast_targets` for one
+/// tenant database.
+///
+/// Id-preserving and **idempotent**: targets that already exist (by `_id`) are
+/// skipped, so re-running is safe. With `dry_run`, computes the report without
+/// writing. The legacy collections are never deleted; the only mutation outside
+/// `onboarded_targets` is the history relink of folded DAST targets, which is
+/// logged so [`revert`] can undo it.
+pub async fn backfill_onboarded_targets(
+    db: &Database,
+    dry_run: bool,
+) -> Result<MigrationReport, AgentError> {
+    let mut report = MigrationReport::default();
+
+    // 1. repositories -> onboarded_targets (preserve _id, skip existing).
+    let mut repos = db.repositories().find(doc! {}).await?;
+    while let Some(repo) = repos.try_next().await? {
+        let Some(id) = repo.id else { continue };
+        if db
+            .onboarded_targets()
+            .find_one(doc! { "_id": id })
+            .await?
+            .is_some()
+        {
+            report.skipped_existing += 1;
+            continue;
+        }
+        if !dry_run {
+            db.onboarded_targets()
+                .insert_one(repo_to_target(&repo))
+                .await?;
+        }
+        report.repos_migrated += 1;
+    }
+
+    // 2. dast_targets -> fold into the linked repo target, or migrate standalone.
+    let mut dasts = db.dast_targets().find(doc! {}).await?;
+    while let Some(dast) = dasts.try_next().await? {
+        let Some(dast_id) = dast.id else { continue };
+        let repo_oid = dast
+            .repo_id
+            .as_deref()
+            .and_then(|r| mongodb::bson::oid::ObjectId::parse_str(r).ok());
+        let linked = match repo_oid {
+            Some(oid) => db.onboarded_targets().find_one(doc! { "_id": oid }).await?,
+            None => None,
+        };
+
+        match (linked, repo_oid) {
+            // Fold into an existing repo-derived target.
+            (Some(mut target), Some(oid)) => {
+                if target.has(ArtifactKind::LiveUrl) {
+                    report.skipped_existing += 1; // already folded on a prior run
+                    continue;
+                }
+                fold_dast_into_target(&mut target, &dast);
+                if !dry_run {
+                    db.onboarded_targets()
+                        .replace_one(doc! { "_id": oid }, &target)
+                        .await?;
+                    relink_history(db, &dast_id.to_hex(), &oid.to_hex()).await?;
+                }
+                report.dast_targets_folded += 1;
+            }
+            // No linked repo target: migrate as a standalone target (keeps _id).
+            _ => {
+                if db
+                    .onboarded_targets()
+                    .find_one(doc! { "_id": dast_id })
+                    .await?
+                    .is_some()
+                {
+                    report.skipped_existing += 1;
+                    continue;
+                }
+                if !dry_run {
+                    db.onboarded_targets()
+                        .insert_one(dast_to_standalone_target(&dast))
+                        .await?;
+                }
+                report.dast_targets_standalone += 1;
+            }
+        }
+    }
+
+    if !dry_run {
+        db.collection_named::<Document>("schema_migrations")
+            .update_one(
+                doc! { "_id": MIGRATION_MARKER },
+                doc! { "$set": { "applied_at": mongodb::bson::DateTime::now() } },
+            )
+            .upsert(true)
+            .await?;
+    }
+    Ok(report)
+}
+
+/// Relink DAST scan runs and pentest sessions from the old DAST target id to the
+/// unified target id, logging each move so [`revert`] can undo it.
+///
+/// Note: if multiple DAST targets fold into the same repo target, revert
+/// restores only the last-logged mapping — a rare edge. The source collections
+/// (`repositories`, `dast_targets`) are never deleted, so no data is lost.
+async fn relink_history(db: &Database, old_id: &str, new_id: &str) -> Result<(), AgentError> {
+    db.dast_scan_runs()
+        .update_many(
+            doc! { "target_id": old_id },
+            doc! { "$set": { "target_id": new_id } },
+        )
+        .await?;
+    db.pentest_sessions()
+        .update_many(
+            doc! { "target_id": old_id },
+            doc! { "$set": { "target_id": new_id } },
+        )
+        .await?;
+    db.collection_named::<Document>("onboarding_migration_log")
+        .insert_one(doc! { "old_target_id": old_id, "new_target_id": new_id })
+        .await?;
+    Ok(())
+}
+
+/// Undo the backfill: replay the relink log in reverse, drop `onboarded_targets`
+/// and the log, and clear the marker. The legacy collections are untouched, so
+/// this restores the pre-migration state.
+pub async fn revert(db: &Database) -> Result<(), AgentError> {
+    let log = db.collection_named::<Document>("onboarding_migration_log");
+    let mut cursor = log.find(doc! {}).await?;
+    while let Some(entry) = cursor.try_next().await? {
+        if let (Ok(old), Ok(new)) = (
+            entry.get_str("old_target_id"),
+            entry.get_str("new_target_id"),
+        ) {
+            db.dast_scan_runs()
+                .update_many(
+                    doc! { "target_id": new },
+                    doc! { "$set": { "target_id": old } },
+                )
+                .await?;
+            db.pentest_sessions()
+                .update_many(
+                    doc! { "target_id": new },
+                    doc! { "$set": { "target_id": old } },
+                )
+                .await?;
+        }
+    }
+    db.onboarded_targets().drop().await?;
+    log.drop().await?;
+    db.collection_named::<Document>("schema_migrations")
+        .delete_one(doc! { "_id": MIGRATION_MARKER })
+        .await?;
+    Ok(())
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use compliance_core::models::{DastAuthConfig, TrackerType};
+
+    fn repo() -> TrackedRepository {
+        let mut r = TrackedRepository::new("acme".to_string(), "https://git/acme.git".to_string());
+        r.id = Some(mongodb::bson::oid::ObjectId::new());
+        r.default_branch = "develop".to_string();
+        r.last_scanned_commit = Some("abc123".to_string());
+        r.auth_token = Some("pat".to_string());
+        r.auth_username = Some("bob".to_string());
+        r.tracker_type = Some(TrackerType::Gitea);
+        r.tracker_owner = Some("acme".to_string());
+        r.findings_count = 7;
+        r
+    }
+
+    fn dast(repo_id: Option<String>, kind: DastTargetType) -> DastTarget {
+        let mut d = DastTarget::new(
+            "acme-web".to_string(),
+            "https://acme.example.com".to_string(),
+            kind,
+        );
+        d.id = Some(mongodb::bson::oid::ObjectId::new());
+        d.repo_id = repo_id;
+        d.max_crawl_depth = 5;
+        d.auth_config = Some(DastAuthConfig {
+            method: "bearer".to_string(),
+            login_url: None,
+            username: None,
+            password: None,
+            token: Some("tok".to_string()),
+            headers: None,
+        });
+        d
+    }
+
+    #[test]
+    fn repo_maps_preserving_id_and_git_artifact() {
+        let r = repo();
+        let t = repo_to_target(&r);
+        assert_eq!(t.id, r.id); // id preserved
+        assert_eq!(t.findings_count, 7);
+        assert_eq!(t.scan_schedule, r.scan_schedule);
+        let git = t.code_artifact().expect("git artifact");
+        assert_eq!(git.kind, ArtifactKind::GitRepo);
+        assert_eq!(git.source_ref, "https://git/acme.git");
+        let gc = git.git.as_ref().expect("git config");
+        assert_eq!(gc.default_branch, "develop");
+        assert_eq!(gc.last_scanned_commit.as_deref(), Some("abc123"));
+        let auth = git.auth.as_ref().expect("auth");
+        assert_eq!(auth.secret.as_deref(), Some("pat"));
+        assert_eq!(auth.username.as_deref(), Some("bob"));
+        assert_eq!(
+            t.scan_config
+                .issue_tracker
+                .as_ref()
+                .and_then(|it| it.tracker_type.clone()),
+            Some(TrackerType::Gitea)
+        );
+    }
+
+    #[test]
+    fn standalone_dast_maps_preserving_id_and_live_url() {
+        let d = dast(None, DastTargetType::WebApp);
+        let t = dast_to_standalone_target(&d);
+        assert_eq!(t.id, d.id);
+        assert_eq!(t.target_type, TargetType::WebApp);
+        let url = t.live_url().expect("live url");
+        assert_eq!(url.source_ref, "https://acme.example.com");
+        let web = url.web.as_ref().expect("web config");
+        assert_eq!(web.max_crawl_depth, 5);
+        assert_eq!(
+            url.auth.as_ref().and_then(|a| a.secret.clone()),
+            Some("tok".to_string())
+        );
+    }
+
+    #[test]
+    fn rest_api_dast_maps_to_backend_service() {
+        let d = dast(None, DastTargetType::RestApi);
+        assert_eq!(
+            dast_to_standalone_target(&d).target_type,
+            TargetType::BackendService
+        );
+    }
+
+    #[test]
+    fn fold_adds_live_url_and_promotes_webapp() {
+        let mut t = repo_to_target(&repo());
+        assert_eq!(t.target_type, TargetType::BackendService);
+        fold_dast_into_target(&mut t, &dast(Some("x".to_string()), DastTargetType::WebApp));
+        assert_eq!(t.target_type, TargetType::WebApp); // promoted
+        assert!(t.has(ArtifactKind::LiveUrl));
+        assert!(t.has(ArtifactKind::GitRepo));
+    }
+
+    #[test]
+    fn fold_is_idempotent_on_live_url() {
+        let mut t = repo_to_target(&repo());
+        let d = dast(Some("x".to_string()), DastTargetType::WebApp);
+        fold_dast_into_target(&mut t, &d);
+        fold_dast_into_target(&mut t, &d);
+        let live_urls = t
+            .artifacts
+            .iter()
+            .filter(|a| a.kind == ArtifactKind::LiveUrl)
+            .count();
+        assert_eq!(live_urls, 1);
+    }
+}

compliance-agent/src/pentest/cleanup.rs

@@ -342,8 +342,7 @@ mod tests {
             pentest_imap_password: None,
             admin_api_token: None,
             tenant_registry_url: None,
-            plc_runtime: compliance_core::PlcRuntimeConfig::default(),
-            werkbank_runner_token: None,
+            unified_pipeline: false,
         }
     }
 

compliance-agent/src/pipeline/cve.rs

@@ -204,202 +204,6 @@ impl CveScanner {
 
         Ok(results)
     }
-
-    /// Match the CODESYS **runtime** component against NVD by CPE.
-    ///
-    /// CODESYS advisories (the CoDe16 cluster and friends) are indexed in NVD by
-    /// CPE (`cpe:2.3:a:codesys:control*`) keyed off the *runtime* version — not by
-    /// the internal `Cmp*`/`Sys*` library names OSV-by-purl would look up. So we
-    /// find the runtime SBOM entry, pull every `cpe:2.3:a:codesys:*` CVE from NVD,
-    /// and keep the ones whose affected-version range covers our runtime version.
-    /// Best-effort: returns empty without an NVD key, on a network error, or when
-    /// no CODESYS runtime component is present.
-    pub async fn scan_codesys(&self, repo_id: &str, entries: &mut [SbomEntry]) -> Vec<CveAlert> {
-        let Some((name, version)) = codesys_runtime(entries) else {
-            return Vec::new();
-        };
-        let url = "https://services.nvd.nist.gov/rest/json/cves/2.0\
-                   ?virtualMatchString=cpe:2.3:a:codesys";
-        let mut req = self.http.get(url);
-        if let Some(key) = &self.nvd_api_key {
-            req = req.header("apiKey", key.as_str());
-        }
-        let body: serde_json::Value = match req.send().await {
-            Ok(r) if r.status().is_success() => match r.json().await {
-                Ok(b) => b,
-                Err(e) => {
-                    tracing::warn!("CODESYS NVD parse failed: {e}");
-                    return Vec::new();
-                }
-            },
-            Ok(r) => {
-                tracing::warn!("CODESYS NVD returned {}", r.status());
-                return Vec::new();
-            }
-            Err(e) => {
-                tracing::warn!("CODESYS NVD request failed: {e}");
-                return Vec::new();
-            }
-        };
-
-        let matched = parse_codesys_nvd(&body, &version);
-        let mut alerts = Vec::new();
-        for cve in matched {
-            if let Some(e) = entries
-                .iter_mut()
-                .find(|e| e.name == name && e.version == version)
-            {
-                e.known_vulnerabilities.push(VulnRef {
-                    id: cve.id.clone(),
-                    source: "nvd".to_string(),
-                    severity: None,
-                    url: Some(format!("https://nvd.nist.gov/vuln/detail/{}", cve.id)),
-                });
-            }
-            let mut alert = CveAlert::new(
-                cve.id,
-                repo_id.to_string(),
-                name.clone(),
-                version.clone(),
-                CveSource::Nvd,
-            );
-            alert.summary = cve.summary;
-            alert.cvss_score = cve.cvss;
-            alerts.push(alert);
-        }
-        tracing::info!(runtime = %name, version = %version, cves = alerts.len(), "CODESYS CVE match");
-        alerts
-    }
-}
-
-/// The CODESYS runtime component (name + version) from an SBOM, if present. The
-/// runtime carries the version CODESYS advisories key off; the internal library
-/// components do not.
-fn codesys_runtime(entries: &[SbomEntry]) -> Option<(String, String)> {
-    entries
-        .iter()
-        .find(|e| e.package_manager == "codesys" && e.name.starts_with("CODESYS Control"))
-        .map(|e| (e.name.clone(), e.version.clone()))
-}
-
-/// A parsed NVD CVE that affects the CODESYS runtime.
-struct CodesysCve {
-    id: String,
-    summary: Option<String>,
-    cvss: Option<f64>,
-}
-
-/// Version constraints from an NVD `cpeMatch` node.
-#[derive(Default)]
-struct CpeRange {
-    exact: Option<String>,
-    start_incl: Option<String>,
-    start_excl: Option<String>,
-    end_incl: Option<String>,
-    end_excl: Option<String>,
-}
-
-/// Parse an NVD CVE-list response and keep the CVEs whose CODESYS CPE match covers
-/// `runtime_version`.
-fn parse_codesys_nvd(body: &serde_json::Value, runtime_version: &str) -> Vec<CodesysCve> {
-    let mut out = Vec::new();
-    let Some(vulns) = body["vulnerabilities"].as_array() else {
-        return out;
-    };
-    for v in vulns {
-        let cve = &v["cve"];
-        let Some(id) = cve["id"].as_str() else {
-            continue;
-        };
-        let covered = cve["configurations"]
-            .as_array()
-            .into_iter()
-            .flatten()
-            .flat_map(|c| c["nodes"].as_array().into_iter().flatten())
-            .flat_map(|n| n["cpeMatch"].as_array().into_iter().flatten())
-            .any(|cm| {
-                cm["vulnerable"].as_bool() == Some(true)
-                    && cm["criteria"]
-                        .as_str()
-                        .is_some_and(|c| c.contains(":codesys:"))
-                    && version_matches(runtime_version, &cpe_range(cm))
-            });
-        if covered {
-            let summary = cve["descriptions"]
-                .as_array()
-                .and_then(|d| d.iter().find(|x| x["lang"].as_str() == Some("en")))
-                .and_then(|x| x["value"].as_str())
-                .map(String::from);
-            let cvss = cve["metrics"]["cvssMetricV31"]
-                .as_array()
-                .and_then(|m| m.first())
-                .and_then(|m| m["cvssData"]["baseScore"].as_f64());
-            out.push(CodesysCve {
-                id: id.to_string(),
-                summary,
-                cvss,
-            });
-        }
-    }
-    out
-}
-
-/// Build a [`CpeRange`] from an NVD `cpeMatch` object.
-fn cpe_range(cm: &serde_json::Value) -> CpeRange {
-    let exact = cm["criteria"]
-        .as_str()
-        .and_then(cpe_version)
-        .filter(|v| v != "*" && v != "-" && !v.is_empty());
-    CpeRange {
-        exact,
-        start_incl: cm["versionStartIncluding"].as_str().map(String::from),
-        start_excl: cm["versionStartExcluding"].as_str().map(String::from),
-        end_incl: cm["versionEndIncluding"].as_str().map(String::from),
-        end_excl: cm["versionEndExcluding"].as_str().map(String::from),
-    }
-}
-
-/// The version field (6th component) of a CPE 2.3 string.
-fn cpe_version(criteria: &str) -> Option<String> {
-    criteria.split(':').nth(5).map(String::from)
-}
-
-/// Whether `v` satisfies a CPE version range.
-fn version_matches(v: &str, r: &CpeRange) -> bool {
-    use std::cmp::Ordering::{Equal, Greater, Less};
-    if let Some(exact) = &r.exact {
-        return cmp_dotted(v, exact) == Equal;
-    }
-    let mut ok = true;
-    if let Some(s) = &r.start_incl {
-        ok &= cmp_dotted(v, s) != Less;
-    }
-    if let Some(s) = &r.start_excl {
-        ok &= cmp_dotted(v, s) == Greater;
-    }
-    if let Some(e) = &r.end_incl {
-        ok &= cmp_dotted(v, e) != Greater;
-    }
-    if let Some(e) = &r.end_excl {
-        ok &= cmp_dotted(v, e) == Less;
-    }
-    ok
-}
-
-/// Compare two dotted numeric versions (`4.17.0.0` vs `4.9.0.0`); missing
-/// components count as 0, non-numeric components as 0.
-fn cmp_dotted(a: &str, b: &str) -> std::cmp::Ordering {
-    let pa: Vec<u64> = a.split('.').map(|x| x.parse().unwrap_or(0)).collect();
-    let pb: Vec<u64> = b.split('.').map(|x| x.parse().unwrap_or(0)).collect();
-    for i in 0..pa.len().max(pb.len()) {
-        let x = pa.get(i).copied().unwrap_or(0);
-        let y = pb.get(i).copied().unwrap_or(0);
-        match x.cmp(&y) {
-            std::cmp::Ordering::Equal => continue,
-            other => return other,
-        }
-    }
-    std::cmp::Ordering::Equal
 }
 
 #[derive(serde::Deserialize)]
@@ -424,90 +228,3 @@ struct OsvVuln {
     summary: Option<String>,
     severity: Option<String>,
 }
-
-#[cfg(test)]
-mod tests {
-    use super::*;
-    use std::cmp::Ordering::{Equal, Greater, Less};
-
-    fn entry(name: &str, ver: &str, pm: &str) -> SbomEntry {
-        SbomEntry::new("t".into(), name.into(), ver.into(), pm.into())
-    }
-
-    #[test]
-    fn finds_the_codesys_runtime_component() {
-        let entries = vec![
-            entry("Standard", "3.5.18.0", "codesys"),
-            entry("CODESYS Control for Linux ARM SL", "4.17.0.0", "codesys"),
-        ];
-        assert_eq!(
-            codesys_runtime(&entries),
-            Some(("CODESYS Control for Linux ARM SL".into(), "4.17.0.0".into()))
-        );
-        // Internal library components are not the runtime.
-        assert!(codesys_runtime(&[entry("Util", "3.5.21.0", "codesys")]).is_none());
-    }
-
-    #[test]
-    fn dotted_version_comparison() {
-        assert_eq!(cmp_dotted("4.17.0.0", "4.9.0.0"), Greater);
-        assert_eq!(cmp_dotted("4.9.0.0", "4.17.0.0"), Less);
-        assert_eq!(cmp_dotted("3.5.18.0", "3.5.18.0"), Equal);
-        assert_eq!(cmp_dotted("4.2", "4.2.0.0"), Equal); // missing components = 0
-    }
-
-    #[test]
-    fn version_range_matching() {
-        let end_excl = CpeRange {
-            end_excl: Some("4.9.0.0".into()),
-            ..Default::default()
-        };
-        assert!(!version_matches("4.17.0.0", &end_excl)); // patched
-        assert!(version_matches("4.5.0.0", &end_excl)); // affected
-
-        let exact = CpeRange {
-            exact: Some("3.5.16.0".into()),
-            ..Default::default()
-        };
-        assert!(version_matches("3.5.16.0", &exact));
-        assert!(!version_matches("3.5.17.0", &exact));
-
-        let span = CpeRange {
-            start_incl: Some("3.0.0.0".into()),
-            end_incl: Some("3.5.16.0".into()),
-            ..Default::default()
-        };
-        assert!(version_matches("3.5.16.0", &span));
-        assert!(!version_matches("3.5.17.0", &span));
-    }
-
-    #[test]
-    fn parses_nvd_and_matches_by_runtime_version() {
-        // Two CODESYS CVEs: one affects < 4.9 (our 4.17 is patched), one affects
-        // <= 4.20 (our 4.17 is affected). Only the latter should match.
-        let body = serde_json::json!({
-          "vulnerabilities": [
-            {"cve": {"id":"CVE-2023-0001",
-              "descriptions":[{"lang":"en","value":"old CmpBlkDrvTcp bug"}],
-              "metrics":{"cvssMetricV31":[{"cvssData":{"baseScore":7.5}}]},
-              "configurations":[{"nodes":[{"cpeMatch":[
-                {"vulnerable":true,
-                 "criteria":"cpe:2.3:a:codesys:control_for_linux_sl:*:*:*:*:*:*:*:*",
-                 "versionEndExcluding":"4.9.0.0"}
-              ]}]}]}},
-            {"cve": {"id":"CVE-2024-0002",
-              "descriptions":[{"lang":"en","value":"recent runtime bug"}],
-              "metrics":{"cvssMetricV31":[{"cvssData":{"baseScore":9.8}}]},
-              "configurations":[{"nodes":[{"cpeMatch":[
-                {"vulnerable":true,
-                 "criteria":"cpe:2.3:a:codesys:control_for_linux_sl:*:*:*:*:*:*:*:*",
-                 "versionEndIncluding":"4.20.0.0"}
-              ]}]}]}}
-          ]
-        });
-        let matched = parse_codesys_nvd(&body, "4.17.0.0");
-        let ids: Vec<&str> = matched.iter().map(|c| c.id.as_str()).collect();
-        assert_eq!(ids, vec!["CVE-2024-0002"]);
-        assert_eq!(matched[0].cvss, Some(9.8));
-    }
-}

compliance-agent/src/pipeline/firmware_sbom.rs

@@ -1,152 +0,0 @@
-//! Firmware SBOM via tramiton.
-//!
-//! Phase 2 (full, the default): drive a **reproducible build** with tramiton's
-//! `NixBackend` — `analyze` → `seal_and_build` → a sealed lock whose libraries
-//! are pinned and whose firmware artifact carries a content hash — then render
-//! the SBOM from the lock plus deep binary SCA of pre-compiled inputs. This is
-//! the complete bill of materials (toolchain + every fetched library + the
-//! firmware image), the same one `tramiton sbom` produces.
-//!
-//! Phase 1 fallback (analysis-only): when no nix backend is available or the
-//! build fails, fall back to the resolvable libraries + toolchain from the build
-//! plan alone (no build). A scan therefore always yields *something*, and a nix
-//! that can't run in the deployment never breaks a scan.
-
-use std::path::Path;
-
-use compliance_core::models::{SbomEntry, TargetType};
-use tramiton_repro::ReproBackend;
-use tramiton_sbom::ComponentKind;
-
-/// Whether firmware SBOM applies to this target family.
-pub fn is_firmware_target(target_type: TargetType) -> bool {
-    matches!(
-        target_type,
-        TargetType::FirmwareBareMetal | TargetType::FirmwareRtos | TargetType::EmbeddedLinuxYocto
-    )
-}
-
-/// Build SBOM entries for a firmware target from its source tree. Prefers a full
-/// reproducible build (sealed lock); falls back to analysis-only. Returns an
-/// empty vector when tramiton cannot even form a build plan.
-pub async fn firmware_sbom_entries(path: &Path, repo_id: &str) -> Vec<SbomEntry> {
-    let p = path.to_path_buf();
-    let repo = repo_id.to_string();
-    // The whole analyze → seal → build → render sequence is blocking (it shells
-    // out to nix), so keep it off the async runtime. Bound it: a firmware build
-    // that hangs must not wedge the scan (the orphaned task is abandoned).
-    let handle = tokio::task::spawn_blocking(move || build_sbom_blocking(&p, &repo));
-    match tokio::time::timeout(std::time::Duration::from_secs(900), handle).await {
-        Ok(Ok(entries)) => entries,
-        Ok(Err(e)) => {
-            tracing::warn!(repo_id, error = %e, "Firmware SBOM: task join error");
-            Vec::new()
-        }
-        Err(_) => {
-            tracing::warn!(repo_id, "Firmware SBOM: build exceeded 15m; skipping");
-            Vec::new()
-        }
-    }
-}
-
-fn build_sbom_blocking(path: &Path, repo_id: &str) -> Vec<SbomEntry> {
-    let repo = tramiton_core::Repo::new(path);
-    let plan = match tramiton_core::provider::analyze(&repo) {
-        Ok(Some(bp)) => bp,
-        Ok(None) => return Vec::new(),
-        Err(e) => {
-            tracing::warn!(repo_id, error = %e, "Firmware SBOM: tramiton analyze failed");
-            return Vec::new();
-        }
-    };
-
-    // Phase 2: reproducible build → sealed lock → complete SBOM.
-    if let Some(backend) = tramiton_repro::NixBackend::detect() {
-        match tramiton_repro::seal_and_build(&backend, &plan, path) {
-            Ok(lock) => {
-                let mut sbom = tramiton_sbom::Sbom::from_lock(&lock, repo_id);
-                // Deep binary SCA of any pre-compiled inputs in the tree.
-                sbom.components.extend(tramiton_sbom::binary::scan(path));
-                let entries = sbom_to_entries(&sbom, repo_id);
-                tracing::info!(
-                    repo_id,
-                    backend = backend.name(),
-                    count = entries.len(),
-                    "Firmware SBOM: sealed reproducible build"
-                );
-                return entries;
-            }
-            Err(e) => {
-                tracing::warn!(repo_id, error = %e, "Firmware SBOM: reproducible build failed; falling back to analysis-only")
-            }
-        }
-    } else {
-        tracing::info!(
-            repo_id,
-            "Firmware SBOM: no nix backend available; analysis-only SBOM"
-        );
-    }
-
-    // Phase 1 fallback: analysis-only (toolchain + resolvable libraries).
-    analysis_entries(&plan, repo_id)
-}
-
-/// Map a rendered [`tramiton_sbom::Sbom`] (primary firmware + components) into
-/// our [`SbomEntry`] rows. Source-file (`File`) components are dropped — they are
-/// build inputs, not a dependency inventory.
-fn sbom_to_entries(sbom: &tramiton_sbom::Sbom, repo_id: &str) -> Vec<SbomEntry> {
-    let mut entries = Vec::new();
-    if let Some(primary) = &sbom.primary {
-        entries.push(component_to_entry(primary, repo_id));
-    }
-    for c in &sbom.components {
-        if matches!(c.kind, ComponentKind::File) {
-            continue;
-        }
-        entries.push(component_to_entry(c, repo_id));
-    }
-    entries
-}
-
-fn component_to_entry(c: &tramiton_sbom::Component, repo_id: &str) -> SbomEntry {
-    let manager = match c.kind {
-        ComponentKind::Firmware => "firmware",
-        ComponentKind::Library => "library",
-        ComponentKind::Toolchain => "toolchain",
-        ComponentKind::File => "file",
-    };
-    let mut entry = SbomEntry::new(
-        repo_id.to_string(),
-        c.name.clone(),
-        c.version.clone().unwrap_or_default(),
-        manager.to_string(),
-    );
-    entry.purl = c.source.clone();
-    entry
-}
-
-/// Analysis-only components from the build plan: the cross-toolchain plus the
-/// resolvable fetched libraries, without a build.
-fn analysis_entries(bp: &tramiton_core::BuildPlan, repo_id: &str) -> Vec<SbomEntry> {
-    let mut entries = Vec::new();
-    if let Some(id) = bp.toolchain.id.clone() {
-        let version = bp.toolchain.version.clone().unwrap_or_default();
-        entries.push(SbomEntry::new(
-            repo_id.to_string(),
-            id,
-            version,
-            "toolchain".to_string(),
-        ));
-    }
-    for lib in tramiton_repro::lock::libraries_from_inputs(&bp.inputs) {
-        let mut entry = SbomEntry::new(
-            repo_id.to_string(),
-            lib.name,
-            lib.revision,
-            "library".to_string(),
-        );
-        entry.purl = lib.source;
-        entries.push(entry);
-    }
-    entries
-}

compliance-agent/src/pipeline/git.rs

@@ -80,10 +80,7 @@ impl GitOps {
 
     #[tracing::instrument(skip_all, fields(repo_name = %repo_name))]
     pub fn clone_or_fetch(&self, git_url: &str, repo_name: &str) -> Result<PathBuf, AgentError> {
-        // Names can contain slashes or other path-hostile characters (a target
-        // named after a repo path, say); collapse to one safe directory segment
-        // so the clone path never nests or breaks.
-        let repo_path = self.base_path.join(sanitize_repo_dir(repo_name));
+        let repo_path = self.base_path.join(repo_name);
 
         if repo_path.exists() {
             tracing::info!("fetching updates for existing repo");
@@ -138,7 +135,7 @@ impl GitOps {
     /// Build credentials from agent config + per-repo overrides
     pub fn make_repo_credentials(
         config: &compliance_core::AgentConfig,
-        repo: &crate::pipeline::repo_view::RepoView,
+        repo: &compliance_core::models::TrackedRepository,
     ) -> RepoCredentials {
         RepoCredentials {
             ssh_key_path: Some(config.ssh_key_path.clone()),
@@ -256,46 +253,3 @@ pub struct DiffFile {
     pub path: String,
     pub hunks: String,
 }
-
-/// Collapse a repository name into a single filesystem-safe directory segment.
-/// Names may carry slashes or other path-hostile characters (a target named
-/// after a repo path, for instance); those would otherwise nest or break the
-/// clone path, so map anything outside `[A-Za-z0-9._-]` to `_`.
-fn sanitize_repo_dir(name: &str) -> String {
-    let mapped: String = name
-        .chars()
-        .map(|c| {
-            if c.is_ascii_alphanumeric() || c == '-' || c == '_' || c == '.' {
-                c
-            } else {
-                '_'
-            }
-        })
-        .collect();
-    let trimmed = mapped.trim_matches(|c| c == '.' || c == '_');
-    if trimmed.is_empty() {
-        "repo".to_string()
-    } else {
-        trimmed.to_string()
-    }
-}
-
-#[cfg(test)]
-mod tests {
-    use super::sanitize_repo_dir;
-
-    #[test]
-    fn sanitizes_path_hostile_names() {
-        assert_eq!(
-            sanitize_repo_dir("zephyr-example-app"),
-            "zephyr-example-app"
-        );
-        assert_eq!(
-            sanitize_repo_dir("ChristianRinn/bare_metal_stm32f411xe"),
-            "ChristianRinn_bare_metal_stm32f411xe"
-        );
-        assert_eq!(sanitize_repo_dir("../../etc/passwd"), "etc_passwd");
-        assert_eq!(sanitize_repo_dir("a b:c"), "a_b_c");
-        assert_eq!(sanitize_repo_dir("///"), "repo");
-    }
-}

compliance-agent/src/pipeline/issue_creation.rs

@@ -1,6 +1,5 @@
 use mongodb::bson::doc;
 
-use crate::pipeline::repo_view::RepoView;
 use compliance_core::models::*;
 
 use super::orchestrator::{extract_base_url, PipelineOrchestrator};
@@ -11,7 +10,7 @@ use crate::trackers;
 impl PipelineOrchestrator {
     /// Build an issue tracker client from a repository's tracker configuration.
     /// Returns `None` if the repo has no tracker configured.
-    pub(super) fn build_tracker(&self, repo: &RepoView) -> Option<TrackerDispatch> {
+    pub(super) fn build_tracker(&self, repo: &TrackedRepository) -> Option<TrackerDispatch> {
         let tracker_type = repo.tracker_type.as_ref()?;
         // Per-repo token takes precedence, fall back to global config
         match tracker_type {
@@ -82,7 +81,7 @@ impl PipelineOrchestrator {
     #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
     pub(super) async fn create_tracker_issues(
         &self,
-        repo: &RepoView,
+        repo: &TrackedRepository,
         repo_id: &str,
         new_findings: &[Finding],
     ) -> Result<(), AgentError> {

compliance-agent/src/pipeline/mod.rs

@@ -1,7 +1,6 @@
 pub mod code_review;
 pub mod cve;
 pub mod dedup;
-pub mod firmware_sbom;
 pub mod git;
 pub mod gitleaks;
 mod graph_build;
@@ -10,9 +9,7 @@ pub mod lint;
 pub mod orchestrator;
 pub mod patterns;
 pub mod plan;
-pub mod plc;
 mod pr_review;
-pub mod repo_view;
 pub mod sbom;
 pub mod semgrep;
 mod tracker_dispatch;

compliance-agent/src/pipeline/orchestrator.rs

@@ -16,7 +16,6 @@ use crate::pipeline::gitleaks::GitleaksScanner;
 use crate::pipeline::lint::LintScanner;
 use crate::pipeline::patterns::{GdprPatternScanner, OAuthPatternScanner};
 use crate::pipeline::plan::build_scan_plan;
-use crate::pipeline::repo_view::RepoView;
 use crate::pipeline::sbom::SbomScanner;
 use crate::pipeline::semgrep::SemgrepScanner;
 
@@ -52,8 +51,72 @@ impl PipelineOrchestrator {
         }
     }
 
+    #[tracing::instrument(skip_all, fields(repo_id = %repo_id, trigger = ?trigger))]
+    pub async fn run(&self, repo_id: &str, trigger: ScanTrigger) -> Result<(), AgentError> {
+        // Look up the repository
+        let repo = self
+            .db
+            .repositories()
+            .find_one(doc! { "_id": mongodb::bson::oid::ObjectId::parse_str(repo_id).map_err(|e| AgentError::Other(e.to_string()))? })
+            .await?
+            .ok_or_else(|| AgentError::Other(format!("Repository {repo_id} not found")))?;
+
+        // Create scan run
+        let scan_run = ScanRun::new(repo_id.to_string(), trigger);
+        let insert = self.db.scan_runs().insert_one(&scan_run).await?;
+        let scan_run_id = insert
+            .inserted_id
+            .as_object_id()
+            .map(|id| id.to_hex())
+            .unwrap_or_default();
+
+        let result = self.run_pipeline(&repo, &scan_run_id).await;
+
+        // Update scan run status
+        match &result {
+            Ok(count) => {
+                self.db
+                    .scan_runs()
+                    .update_one(
+                        doc! { "_id": &insert.inserted_id },
+                        doc! {
+                            "$set": {
+                                "status": "completed",
+                                "current_phase": "completed",
+                                "new_findings_count": *count as i64,
+                                "completed_at": mongodb::bson::DateTime::now(),
+                            }
+                        },
+                    )
+                    .await?;
+            }
+            Err(e) => {
+                tracing::error!(repo_id, error = %e, "Scan pipeline failed");
+                self.db
+                    .scan_runs()
+                    .update_one(
+                        doc! { "_id": &insert.inserted_id },
+                        doc! {
+                            "$set": {
+                                "status": "failed",
+                                "error_message": e.to_string(),
+                                "completed_at": mongodb::bson::DateTime::now(),
+                            }
+                        },
+                    )
+                    .await?;
+            }
+        }
+
+        result.map(|_| ())
+    }
+
     #[tracing::instrument(skip_all, fields(repo_id = repo.name.as_str()))]
-    async fn run_pipeline(&self, repo: &RepoView, scan_run_id: &str) -> Result<u32, AgentError> {
+    async fn run_pipeline(
+        &self,
+        repo: &TrackedRepository,
+        scan_run_id: &str,
+    ) -> Result<u32, AgentError> {
         let repo_id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
 
         // Stage 0: Change detection
@@ -67,6 +130,7 @@ impl PipelineOrchestrator {
             return Ok(0);
         }
 
+        let current_sha = GitOps::get_head_sha(&repo_path)?;
         let mut all_findings: Vec<Finding> = Vec::new();
 
         // Stage 1: Semgrep SAST
@@ -259,12 +323,67 @@ impl PipelineOrchestrator {
                 .await?;
         }
 
-        // Persist CVE alerts and create notifications (shared with the PLC path).
-        let new_notif_count = self
-            .persist_cve_alerts(&repo_id, &repo.name, &cve_alerts)
-            .await?;
-        if new_notif_count > 0 {
-            tracing::info!("[{repo_id}] Created {new_notif_count} CVE notification(s)");
+        // Persist CVE alerts and create notifications
+        {
+            use compliance_core::models::notification::{parse_severity, CveNotification};
+
+            let repo_name = repo.name.clone();
+            let mut new_notif_count = 0u32;
+
+            for alert in &cve_alerts {
+                // Upsert the alert
+                let filter = doc! {
+                    "cve_id": &alert.cve_id,
+                    "repo_id": &alert.repo_id,
+                };
+                let update = mongodb::bson::to_document(alert)
+                    .map(|d| doc! { "$set": d })
+                    .unwrap_or_else(|_| doc! {});
+                self.db
+                    .cve_alerts()
+                    .update_one(filter, update)
+                    .upsert(true)
+                    .await?;
+
+                // Create notification (dedup by cve_id + repo + package + version)
+                let notif_filter = doc! {
+                    "cve_id": &alert.cve_id,
+                    "repo_id": &alert.repo_id,
+                    "package_name": &alert.affected_package,
+                    "package_version": &alert.affected_version,
+                };
+                let severity = parse_severity(alert.severity.as_deref(), alert.cvss_score);
+                let mut notification = CveNotification::new(
+                    alert.cve_id.clone(),
+                    repo_id.clone(),
+                    repo_name.clone(),
+                    alert.affected_package.clone(),
+                    alert.affected_version.clone(),
+                    severity,
+                );
+                notification.cvss_score = alert.cvss_score;
+                notification.summary = alert.summary.clone();
+                notification.url = Some(format!("https://osv.dev/vulnerability/{}", alert.cve_id));
+
+                let notif_update = doc! {
+                    "$setOnInsert": mongodb::bson::to_bson(&notification).unwrap_or_default()
+                };
+                if let Ok(result) = self
+                    .db
+                    .cve_notifications()
+                    .update_one(notif_filter, notif_update)
+                    .upsert(true)
+                    .await
+                {
+                    if result.upserted_id.is_some() {
+                        new_notif_count += 1;
+                    }
+                }
+            }
+
+            if new_notif_count > 0 {
+                tracing::info!("[{repo_id}] Created {new_notif_count} CVE notification(s)");
+            }
         }
 
         // Stage 6: Issue Creation
@@ -277,9 +396,20 @@ impl PipelineOrchestrator {
             tracing::warn!("[{repo_id}] Issue creation failed: {e}");
         }
 
-        // The onboarded target's findings_count and the git artifact's
-        // last_scanned_commit watermark are persisted by `finalize_target` after
-        // `run_pipeline` returns.
+        // Stage 7: Update repository
+        self.db
+            .repositories()
+            .update_one(
+                doc! { "_id": repo.id },
+                doc! {
+                    "$set": {
+                        "last_scanned_commit": &current_sha,
+                        "updated_at": mongodb::bson::DateTime::now(),
+                    },
+                    "$inc": { "findings_count": new_count as i64 },
+                },
+            )
+            .await?;
 
         // Stage 8: DAST (async, optional — only if a DastTarget is configured)
         tracing::info!("[{repo_id}] Stage 8: Checking for DAST targets");
@@ -331,25 +461,6 @@ impl PipelineOrchestrator {
                         } },
                     )
                     .await?;
-                // Refresh the target's cached findings count. The shared pipeline
-                // (Stage 7) increments `repositories`, which the unified path does
-                // not use, so set the accurate total on the target itself.
-                let total = self
-                    .db
-                    .findings()
-                    .count_documents(doc! { "repo_id": target_id })
-                    .await
-                    .unwrap_or(*count as u64);
-                self.db
-                    .onboarded_targets()
-                    .update_one(
-                        doc! { "_id": oid },
-                        doc! { "$set": {
-                            "findings_count": total as i64,
-                            "updated_at": mongodb::bson::DateTime::now(),
-                        } },
-                    )
-                    .await?;
             }
             Err(e) => {
                 tracing::error!(target_id, error = %e, "Unified scan pipeline failed");
@@ -387,592 +498,33 @@ impl PipelineOrchestrator {
             "Unified pipeline: scan plan built"
         );
 
-        // Ingest + classify (tramiton for firmware) and store the detected type.
-        self.classify_and_store(target, &target_id, scan_run_id)
-            .await;
-        // Provision a DAST target from a LiveUrl artifact so DAST fires for
-        // wizard-created targets, not just migrated ones.
-        self.ensure_dast_target(target, &plan).await;
-
-        // PLC/SPS targets: the control-logic scan consumes the PLC source (an
-        // uploaded PlcProject *or* a git repo / source archive of PLCopen XML / ST
-        // exports), so it takes over the code artifact — we don't also run the
-        // SAST pipeline over it. A PLC device is reachable, so DAST still runs
-        // against a WebVisu / exposed endpoint when one is provisioned.
-        let mut new_count = 0u32;
-        let plc = plan.has(ScanType::PlcControlLogic);
-        let ics = plan.has(ScanType::IcsProbe);
-        if plc {
-            new_count += self.run_plc_scan(target, &target_id, scan_run_id).await?;
-            // Provision-and-test (#183): with the control logic but no reachable
-            // device, instantiate it on an ephemeral soft-PLC and probe that
-            // instead of the customer's OT network. Opt-in (needs Docker) and only
-            // when there is no live URL to probe directly. Never fails the scan.
-            if self.config.plc_runtime.enabled && target.live_url().is_none() {
-                match self
-                    .run_provisioned_plc_test(target, &target_id, scan_run_id)
-                    .await
-                {
-                    Ok(n) => new_count += n,
-                    Err(e) => {
-                        tracing::warn!(target_id = %target_id, error = %e, "provision-and-test failed")
-                    }
-                }
-            }
-        }
-        if ics {
-            new_count += self.run_ics_probe(target, &target_id, scan_run_id).await?;
-        }
-        if plc || ics {
-            // PLC/SPS device: also DAST against a WebVisu / exposed endpoint, but
-            // only when DAST is actually planned — a device reachable only over an
-            // industrial protocol (e.g. modbus://) has no web surface to crawl, and
-            // running DAST there just fails at reconnaissance. Gating here (not only
-            // at provisioning) also stops a DAST target left over from an earlier
-            // run from re-triggering. The control-logic scan already consumed the
-            // code artifact, so the SAST pipeline is not re-run.
-            if plan.has(ScanType::Dast) {
-                self.update_phase(scan_run_id, "dast_scanning").await;
-                self.maybe_trigger_dast(&target_id, scan_run_id).await;
-            }
-            return Ok(new_count);
-        }
-
         match target.code_artifact() {
             Some(code) if code.kind == ArtifactKind::GitRepo => {
-                let repo = RepoView::from_target(target, code);
-                let n = self.run_pipeline(&repo, scan_run_id).await?;
-                self.finalize_target(target, &repo, n).await?;
-                new_count += n;
+                let repo = repo_view_from_target(target, code);
+                let new_count = self.run_pipeline(&repo, scan_run_id).await?;
+                self.finalize_target(target, &repo, new_count).await?;
+                Ok(new_count)
             }
             Some(_) => {
                 tracing::warn!(
                     target_id = %target_id,
                     "Unified pipeline: source-archive scanning not yet wired; skipping"
                 );
+                Ok(0)
             }
             None => {
-                // No code to scan (a migrated DAST target). Firmware/mobile static
-                // scanners land in #128/#129; DAST for a running URL works when a
-                // DastTarget row exists (provisioned above from a LiveUrl, or from
-                // a migrated target).
+                // No code to scan. Firmware/PLC/mobile static scanners land in
+                // #128/#129/#130; DAST for a running URL still works when a
+                // DastTarget row exists (migrated targets).
                 tracing::info!(
                     target_id = %target_id,
-                    "Unified pipeline: no code artifact; attempting DAST"
+                    "Unified pipeline: no code artifact; attempting DAST only"
                 );
                 self.update_phase(scan_run_id, "dast_scanning").await;
                 self.maybe_trigger_dast(&target_id, scan_run_id).await;
+                Ok(0)
             }
         }
-        Ok(new_count)
-    }
-
-    /// Analyze a PLC/SPS project (Structured Text / PLCopen XML) for
-    /// control-logic security issues and persist the new findings.
-    async fn run_plc_scan(
-        &self,
-        target: &OnboardedTarget,
-        target_id: &str,
-        scan_run_id: &str,
-    ) -> Result<u32, AgentError> {
-        tracing::info!(target_id, "[{target_id}] PLC control-logic analysis");
-        self.update_phase(scan_run_id, "plc_analysis").await;
-
-        let ctx = crate::ingest::IngestContext::from_config(&self.config, target_id);
-        let ingest_set = crate::ingest::ingest_all(target, &ctx)?;
-        // Every PLC-source artifact on the target: dedicated PLC projects plus any
-        // code artifacts (git repo / source archive) holding PLCopen XML / ST
-        // exports. A target can carry several (e.g. one POU export per file).
-        let sources: Vec<&Artifact> = target
-            .artifacts
-            .iter()
-            .filter(|a| {
-                matches!(
-                    a.kind,
-                    ArtifactKind::PlcProject | ArtifactKind::GitRepo | ArtifactKind::SourceArchive
-                )
-            })
-            .collect();
-        if sources.is_empty() {
-            tracing::warn!(target_id, "PLC scan: no PLC source artifact");
-            return Ok(0);
-        }
-
-        let mut all_findings = Vec::new();
-        let mut all_sbom: Vec<SbomEntry> = Vec::new();
-        let mut sbom_seen = std::collections::BTreeSet::new();
-        for a in &sources {
-            let Some(path) = ingest_set.get(&a.id).and_then(|ia| ia.working_path.clone()) else {
-                continue;
-            };
-            all_findings.extend(crate::pipeline::plc::analyze_tree(&path, target_id));
-            // Control-application SBOM: CODESYS libraries + runtime from a
-            // `.projectarchive` (uploaded, or committed in the working tree).
-            let archive = a
-                .stored_path
-                .clone()
-                .unwrap_or_else(|| a.source_ref.clone());
-            for e in crate::pipeline::plc::sbom::collect_sbom(
-                std::path::Path::new(&archive),
-                &path,
-                target_id,
-            ) {
-                if sbom_seen.insert((e.name.clone(), e.version.clone())) {
-                    all_sbom.push(e);
-                }
-            }
-        }
-        tracing::info!(
-            target_id,
-            artifacts = sources.len(),
-            found = all_findings.len(),
-            "PLC control-logic analysis complete"
-        );
-
-        let mut new_count = 0u32;
-        for mut finding in all_findings {
-            finding.scan_run_id = Some(scan_run_id.to_string());
-            if self
-                .db
-                .findings()
-                .find_one(doc! { "fingerprint": &finding.fingerprint })
-                .await?
-                .is_none()
-            {
-                self.db.findings().insert_one(&finding).await?;
-                new_count += 1;
-            }
-        }
-
-        if !all_sbom.is_empty() {
-            if let Err(e) = self
-                .persist_control_app_sbom(target_id, &target.name, all_sbom)
-                .await
-            {
-                tracing::warn!(target_id, error = %e, "control-app SBOM persist failed");
-            }
-        }
-        Ok(new_count)
-    }
-
-    /// Provision-and-test (#183): instantiate the target's control logic on an
-    /// ephemeral soft-PLC (OpenPLC), start it, probe the provisioned Modbus
-    /// endpoint, and tear the instance down. Used when a PLC/SPS target has the
-    /// control logic but no reachable live device to probe directly. Guarded by
-    /// `plc_runtime.enabled` (needs Docker); persists the same [`ScanType::IcsProbe`]
-    /// findings as a live probe.
-    async fn run_provisioned_plc_test(
-        &self,
-        target: &OnboardedTarget,
-        target_id: &str,
-        scan_run_id: &str,
-    ) -> Result<u32, AgentError> {
-        self.update_phase(scan_run_id, "plc_provision").await;
-
-        // Locate a loadable control-logic program among the PLC-source artifacts
-        // (same selection as the static PLC scan: dedicated PLC projects plus code
-        // artifacts holding PLCopen XML / ST exports).
-        let ctx = crate::ingest::IngestContext::from_config(&self.config, target_id);
-        let ingest_set = crate::ingest::ingest_all(target, &ctx)?;
-        let program = target
-            .artifacts
-            .iter()
-            .filter(|a| {
-                matches!(
-                    a.kind,
-                    ArtifactKind::PlcProject | ArtifactKind::GitRepo | ArtifactKind::SourceArchive
-                )
-            })
-            .find_map(|a| {
-                let path = ingest_set
-                    .get(&a.id)
-                    .and_then(|ia| ia.working_path.clone())?;
-                werkbank_exec::plc::extract_program(&path)
-            });
-        let Some(program) = program else {
-            tracing::info!(
-                target_id,
-                "provision-and-test: no loadable control-logic program"
-            );
-            return Ok(0);
-        };
-
-        let http = werkbank_exec::plc::http_client()?;
-        let provisioner = werkbank_exec::plc::DockerSoftPlc::new(self.config.plc_runtime.clone());
-        let outcome = werkbank_exec::plc::provision_and_test(
-            &provisioner,
-            &http,
-            &self.config.plc_runtime,
-            &program,
-            target_id,
-        )
-        .await?;
-        tracing::info!(
-            target_id,
-            found = outcome.findings.len(),
-            dast = outcome.dast.is_some(),
-            "provision-and-test complete"
-        );
-
-        let mut new_count = 0u32;
-        for mut finding in outcome.findings {
-            finding.scan_run_id = Some(scan_run_id.to_string());
-            if self
-                .db
-                .findings()
-                .find_one(doc! { "fingerprint": &finding.fingerprint })
-                .await?
-                .is_none()
-            {
-                self.db.findings().insert_one(&finding).await?;
-                new_count += 1;
-            }
-        }
-
-        // Persist the DAST scan of the provisioned web endpoint, linked to this
-        // scan run (mirrors `maybe_trigger_dast`).
-        if let Some(dast) = outcome.dast {
-            let mut scan_run = dast.scan_run;
-            scan_run.sast_scan_run_id = Some(scan_run_id.to_string());
-            if let Err(e) = self.db.dast_scan_runs().insert_one(&scan_run).await {
-                tracing::warn!(target_id, error = %e, "failed to store provisioned DAST scan run");
-            }
-            for finding in &dast.findings {
-                if let Err(e) = self.db.dast_findings().insert_one(finding).await {
-                    tracing::warn!(target_id, error = %e, "failed to store provisioned DAST finding");
-                }
-            }
-        }
-        Ok(new_count)
-    }
-
-    /// Probe a running PLC/SPS device over industrial protocols (Modbus/TCP, …)
-    /// and persist findings for exposed / unauthenticated control access. The
-    /// probe is read-only; it targets the Modbus port of the target's live URL.
-    async fn run_ics_probe(
-        &self,
-        target: &OnboardedTarget,
-        target_id: &str,
-        scan_run_id: &str,
-    ) -> Result<u32, AgentError> {
-        self.update_phase(scan_run_id, "ics_probe").await;
-        let Some(endpoint) = target.live_url().map(|a| a.source_ref.clone()) else {
-            tracing::warn!(target_id, "ICS probe: no live URL");
-            return Ok(0);
-        };
-        // Short per-request budget so an unreachable device doesn't stall the scan.
-        let budget = std::time::Duration::from_secs(5);
-        let findings = werkbank_exec::ics::probe_target(&endpoint, target_id, budget).await;
-        tracing::info!(
-            target_id,
-            endpoint = %endpoint,
-            found = findings.len(),
-            "ICS probe complete"
-        );
-        let mut new_count = 0u32;
-        for mut finding in findings {
-            finding.scan_run_id = Some(scan_run_id.to_string());
-            if self
-                .db
-                .findings()
-                .find_one(doc! { "fingerprint": &finding.fingerprint })
-                .await?
-                .is_none()
-            {
-                self.db.findings().insert_one(&finding).await?;
-                new_count += 1;
-            }
-        }
-        Ok(new_count)
-    }
-
-    /// Store a control-application SBOM (CODESYS libraries + runtime) for a target
-    /// and match it against known CVEs. Scoped to `package_manager = "codesys"` so
-    /// it refreshes on re-scan and coexists with any firmware/source SBOM. The
-    /// runtime `Cmp*` / `3SLicense` components carry real CODESYS advisories, so
-    /// this is where PLC-device CVE coverage comes from.
-    async fn persist_control_app_sbom(
-        &self,
-        target_id: &str,
-        target_name: &str,
-        mut entries: Vec<SbomEntry>,
-    ) -> Result<(), AgentError> {
-        if entries.is_empty() {
-            return Ok(());
-        }
-        self.db
-            .sbom_entries()
-            .delete_many(doc! { "repo_id": target_id, "package_manager": "codesys" })
-            .await?;
-
-        let cve_scanner = CveScanner::new(
-            self.http.clone(),
-            self.config.searxng_url.clone(),
-            self.config.nvd_api_key.as_ref().map(|k| {
-                use secrecy::ExposeSecret;
-                k.expose_secret().to_string()
-            }),
-        );
-        let mut alerts = match tokio::time::timeout(
-            std::time::Duration::from_secs(600),
-            cve_scanner.scan_dependencies(target_id, &mut entries),
-        )
-        .await
-        {
-            Ok(Ok(a)) => a,
-            Ok(Err(e)) => {
-                tracing::warn!(target_id, error = %e, "control-app CVE scan failed");
-                Vec::new()
-            }
-            Err(_) => {
-                tracing::warn!(target_id, "control-app CVE scan timed out");
-                Vec::new()
-            }
-        };
-        // OSV can't match `pkg:codesys/*` (no such ecosystem); CODESYS advisories
-        // live in NVD keyed by CPE + runtime version. Add those (best-effort).
-        if let Ok(codesys) = tokio::time::timeout(
-            std::time::Duration::from_secs(120),
-            cve_scanner.scan_codesys(target_id, &mut entries),
-        )
-        .await
-        {
-            alerts.extend(codesys);
-        } else {
-            tracing::warn!(target_id, "CODESYS CVE match timed out");
-        }
-
-        for entry in &entries {
-            let filter = doc! {
-                "repo_id": &entry.repo_id,
-                "name": &entry.name,
-                "version": &entry.version,
-            };
-            if let Ok(d) = mongodb::bson::to_document(entry) {
-                self.db
-                    .sbom_entries()
-                    .update_one(filter, doc! { "$set": d })
-                    .upsert(true)
-                    .await?;
-            }
-        }
-        let new_notifs = self
-            .persist_cve_alerts(target_id, target_name, &alerts)
-            .await?;
-        tracing::info!(
-            target_id,
-            components = entries.len(),
-            alerts = alerts.len(),
-            notifications = new_notifs,
-            "control-app SBOM stored"
-        );
-        Ok(())
-    }
-
-    /// Upsert CVE alerts for a target and create dedup'd CVE notifications;
-    /// returns the number of newly-created notifications. Shared by the SAST
-    /// pipeline and the PLC control-app SBOM path, so every SBOM source (source,
-    /// firmware, CODESYS libraries/runtime) raises the same notifications.
-    async fn persist_cve_alerts(
-        &self,
-        repo_id: &str,
-        repo_name: &str,
-        alerts: &[CveAlert],
-    ) -> Result<u32, AgentError> {
-        use compliance_core::models::notification::{parse_severity, CveNotification};
-
-        let mut new_notif = 0u32;
-        for alert in alerts {
-            let filter = doc! { "cve_id": &alert.cve_id, "repo_id": &alert.repo_id };
-            let update = mongodb::bson::to_document(alert)
-                .map(|d| doc! { "$set": d })
-                .unwrap_or_else(|_| doc! {});
-            self.db
-                .cve_alerts()
-                .update_one(filter, update)
-                .upsert(true)
-                .await?;
-
-            // Dedup notifications by cve + repo + package + version.
-            let notif_filter = doc! {
-                "cve_id": &alert.cve_id,
-                "repo_id": &alert.repo_id,
-                "package_name": &alert.affected_package,
-                "package_version": &alert.affected_version,
-            };
-            let severity = parse_severity(alert.severity.as_deref(), alert.cvss_score);
-            let mut notification = CveNotification::new(
-                alert.cve_id.clone(),
-                repo_id.to_string(),
-                repo_name.to_string(),
-                alert.affected_package.clone(),
-                alert.affected_version.clone(),
-                severity,
-            );
-            notification.cvss_score = alert.cvss_score;
-            notification.summary = alert.summary.clone();
-            notification.url = Some(format!("https://osv.dev/vulnerability/{}", alert.cve_id));
-            let notif_update = doc! {
-                "$setOnInsert": mongodb::bson::to_bson(&notification).unwrap_or_default()
-            };
-            if let Ok(result) = self
-                .db
-                .cve_notifications()
-                .update_one(notif_filter, notif_update)
-                .upsert(true)
-                .await
-            {
-                if result.upserted_id.is_some() {
-                    new_notif += 1;
-                }
-            }
-        }
-        Ok(new_notif)
-    }
-
-    /// Ingest the target's artifacts, classify (tramiton for firmware/RTOS/Yocto,
-    /// heuristics otherwise), and store the detected classification on the target.
-    /// Best-effort — never fails the scan.
-    async fn classify_and_store(
-        &self,
-        target: &OnboardedTarget,
-        target_id: &str,
-        scan_run_id: &str,
-    ) {
-        self.update_phase(scan_run_id, "classification").await;
-        let ctx = crate::ingest::IngestContext::from_config(&self.config, target_id);
-        let ingest_set = match crate::ingest::ingest_all(target, &ctx) {
-            Ok(set) => set,
-            Err(e) => {
-                tracing::warn!(target_id, error = %e, "Unified pipeline: ingest for classification failed");
-                return;
-            }
-        };
-        let working_paths = ingest_set.working_paths();
-        match crate::classify::classify_target(
-            target,
-            &working_paths,
-            &crate::classify::TramitonNative,
-        )
-        .await
-        {
-            Ok(classification) => {
-                tracing::info!(
-                    target_id,
-                    suggested = %classification.suggested,
-                    "Unified pipeline: classified target"
-                );
-                if let (Some(oid), Ok(bson)) = (target.id, mongodb::bson::to_bson(&classification))
-                {
-                    let _ = self
-                        .db
-                        .onboarded_targets()
-                        .update_one(
-                            doc! { "_id": oid },
-                            doc! { "$set": { "classification": bson } },
-                        )
-                        .await;
-                }
-            }
-            Err(e) => {
-                tracing::warn!(target_id, error = %e, "Unified pipeline: classification failed")
-            }
-        }
-
-        // Analysis-based firmware SBOM: for embedded targets, derive components
-        // (resolved libraries + cross-toolchain) from tramiton's build-plan
-        // analysis over the already-ingested source — no build, no binary
-        // upload. Best-effort; empty when no build plan forms.
-        if crate::pipeline::firmware_sbom::is_firmware_target(target.target_type) {
-            if let Some(code) = target.code_artifact() {
-                if let Some(path) = working_paths.get(&code.id) {
-                    let entries =
-                        crate::pipeline::firmware_sbom::firmware_sbom_entries(path, target_id)
-                            .await;
-                    if !entries.is_empty() {
-                        let _ = self
-                            .db
-                            .sbom_entries()
-                            .delete_many(doc! { "repo_id": target_id })
-                            .await;
-                        for entry in &entries {
-                            let filter = doc! {
-                                "repo_id": &entry.repo_id,
-                                "name": &entry.name,
-                                "version": &entry.version,
-                            };
-                            if let Ok(d) = mongodb::bson::to_document(entry) {
-                                let _ = self
-                                    .db
-                                    .sbom_entries()
-                                    .update_one(filter, doc! { "$set": d })
-                                    .upsert(true)
-                                    .await;
-                            }
-                        }
-                        tracing::info!(
-                            target_id,
-                            count = entries.len(),
-                            "Firmware SBOM: stored components from tramiton analysis"
-                        );
-                    }
-                }
-            }
-        }
-    }
-
-    /// If the target has a `LiveUrl` artifact and DAST is planned, provision a
-    /// `DastTarget` (keyed by `repo_id` = target id) so the existing DAST trigger
-    /// fires for wizard-created targets. Idempotent.
-    async fn ensure_dast_target(
-        &self,
-        target: &OnboardedTarget,
-        plan: &crate::pipeline::plan::ScanPlan,
-    ) {
-        if !plan.has(ScanType::Dast) {
-            return;
-        }
-        let (Some(url), Some(oid)) = (target.live_url(), target.id) else {
-            return;
-        };
-        let target_id = oid.to_hex();
-        if self
-            .db
-            .dast_targets()
-            .find_one(doc! { "repo_id": &target_id })
-            .await
-            .ok()
-            .flatten()
-            .is_some()
-        {
-            return; // already provisioned
-        }
-        let kind = url
-            .web
-            .as_ref()
-            .map(|w| w.target_kind.clone())
-            .unwrap_or(DastTargetType::WebApp);
-        let mut dast = DastTarget::new(target.name.clone(), url.source_ref.clone(), kind);
-        dast.repo_id = Some(target_id);
-        if let Some(web) = &url.web {
-            dast.excluded_paths = web.excluded_paths.clone();
-            dast.max_crawl_depth = web.max_crawl_depth;
-            dast.rate_limit = web.rate_limit;
-            dast.allow_destructive = web.allow_destructive;
-        }
-        if let Some(auth) = &url.auth {
-            dast.auth_config = Some(DastAuthConfig {
-                method: auth.method.clone(),
-                login_url: auth.login_url.clone(),
-                username: auth.username.clone(),
-                password: None,
-                token: auth.secret.clone(),
-                headers: auth.headers.clone(),
-            });
-        }
-        if let Err(e) = self.db.dast_targets().insert_one(&dast).await {
-            tracing::warn!(error = %e, "Unified pipeline: failed to provision DAST target");
-        }
     }
 
     /// Sync the onboarded-target document after a scan: bump `findings_count`
@@ -980,7 +532,7 @@ impl PipelineOrchestrator {
     async fn finalize_target(
         &self,
         target: &OnboardedTarget,
-        repo: &RepoView,
+        repo: &TrackedRepository,
         new_count: u32,
     ) -> Result<(), AgentError> {
         let oid = match target.id {
@@ -1028,6 +580,37 @@ impl PipelineOrchestrator {
     }
 }
 
+/// Build a legacy `TrackedRepository` view from an onboarded target's code
+/// artifact, so the unified pipeline can reuse the existing repo pipeline. The
+/// inverse of the migration's `repo_to_target`. `_id` is preserved so findings
+/// and DAST lookups resolve against the same key.
+fn repo_view_from_target(target: &OnboardedTarget, code: &Artifact) -> TrackedRepository {
+    let mut repo = TrackedRepository::new(target.name.clone(), code.source_ref.clone());
+    repo.id = target.id;
+    if let Some(git) = &code.git {
+        repo.default_branch = git.default_branch.clone();
+        repo.last_scanned_commit = git.last_scanned_commit.clone();
+        repo.local_path = git.local_path.clone();
+    }
+    if let Some(auth) = &code.auth {
+        repo.auth_token = auth.secret.clone();
+        repo.auth_username = auth.username.clone();
+    }
+    if let Some(it) = &target.scan_config.issue_tracker {
+        repo.tracker_type = it.tracker_type.clone();
+        repo.tracker_owner = it.owner.clone();
+        repo.tracker_repo = it.repo.clone();
+        repo.tracker_token = it.token.clone();
+    }
+    repo.scan_schedule = target.scan_schedule.clone();
+    repo.webhook_enabled = target.webhook_enabled;
+    repo.webhook_secret = target.webhook_secret.clone();
+    repo.findings_count = target.findings_count;
+    repo.created_at = target.created_at;
+    repo.updated_at = target.updated_at;
+    repo
+}
+
 /// Extract the scheme + host from a git URL.
 /// e.g. "https://gitea.example.com/owner/repo.git" -> "https://gitea.example.com"
 /// e.g. "ssh://git@gitea.example.com:22/owner/repo.git" -> "https://gitea.example.com"
@@ -1086,7 +669,7 @@ mod tests {
         target.artifacts.push(artifact);
 
         let code = target.code_artifact().expect("code artifact");
-        let repo = RepoView::from_target(&target, code);
+        let repo = repo_view_from_target(&target, code);
 
         assert_eq!(repo.id, target.id); // preserved
         assert_eq!(repo.git_url, "https://git/acme.git");

compliance-agent/src/pipeline/plan.rs

@@ -75,16 +75,10 @@ pub fn build_scan_plan(target: &OnboardedTarget) -> ScanPlan {
 }
 
 /// Resolve the artifact a scan consumes. A "code" requirement (represented by
-/// `GitRepo`) is satisfied by a git repo *or* a source archive. The PLC
-/// control-logic requirement (represented by `PlcProject`) prefers an uploaded
-/// PLC project but also accepts a code artifact — a git repo / source archive
-/// holding PLCopen XML / ST exports.
+/// `GitRepo`) is satisfied by a git repo *or* a source archive.
 fn resolve_artifact(target: &OnboardedTarget, required: Option<ArtifactKind>) -> Option<&Artifact> {
     match required {
         Some(ArtifactKind::GitRepo) => target.code_artifact(),
-        Some(ArtifactKind::PlcProject) => target
-            .first_of(ArtifactKind::PlcProject)
-            .or_else(|| target.code_artifact()),
         Some(kind) => target.first_of(kind),
         None => target.code_artifact().or_else(|| target.artifacts.first()),
     }
@@ -106,7 +100,6 @@ fn phase_for(scan: ScanType) -> ScanPhase {
         ScanType::PlcControlLogic => ScanPhase::PlcAnalysis,
         ScanType::MobileStatic => ScanPhase::MobileStatic,
         ScanType::ContainerScan => ScanPhase::ContainerScan,
-        ScanType::IcsProbe => ScanPhase::IcsProbe,
     }
 }
 
@@ -181,18 +174,6 @@ mod tests {
         assert_eq!(plan.steps[0].phase, ScanPhase::PlcAnalysis);
     }
 
-    #[test]
-    fn plc_control_logic_binds_to_a_git_repo() {
-        // A CODESYS project in git (PLCopen XML / ST exports) with no uploaded
-        // PlcProject: control-logic still plans, bound to the git artifact.
-        let git = Artifact::git_repo("https://git/plc", "main");
-        let git_id = git.id.clone();
-        let t = target(TargetType::PlcSps, vec![git]);
-        let plan = build_scan_plan(&t);
-        let step = step_for(&plan, ScanType::PlcControlLogic).expect("control-logic planned");
-        assert_eq!(step.artifact_id, git_id, "PLC scan binds to the git repo");
-    }
-
     #[test]
     fn disabled_scan_is_dropped_and_off_by_default_can_be_enabled() {
         let mut t = target(TargetType::WebApp, vec![Artifact::git_repo("u", "main")]);

compliance-agent/src/pipeline/plc/ast.rs

@@ -1,226 +0,0 @@
-//! Abstract syntax tree for IEC 61131-3 Structured Text (ST).
-//!
-//! This is the security-relevant subset: POUs with their variable declarations
-//! and statement bodies, enough to run semantic control-logic rules over. It is
-//! deliberately not a full language model — declarations we don't reason about
-//! (e.g. exotic type definitions) are parsed loosely and kept as raw text.
-
-/// A Program Organization Unit: a PROGRAM, FUNCTION, or FUNCTION_BLOCK.
-#[derive(Debug, Clone)]
-pub struct Pou {
-    pub name: String,
-    pub kind: PouKind,
-    /// The declared variables, across all VAR_* sections.
-    pub vars: Vec<VarDecl>,
-    /// The statement body.
-    pub body: Vec<Stmt>,
-    /// 1-based line where the POU header appears (in the source that was parsed).
-    pub line: u32,
-}
-
-#[derive(Debug, Clone, Copy, PartialEq, Eq)]
-pub enum PouKind {
-    Program,
-    Function,
-    FunctionBlock,
-}
-
-impl PouKind {
-    pub fn label(self) -> &'static str {
-        match self {
-            PouKind::Program => "PROGRAM",
-            PouKind::Function => "FUNCTION",
-            PouKind::FunctionBlock => "FUNCTION_BLOCK",
-        }
-    }
-}
-
-/// A single declared variable.
-#[derive(Debug, Clone)]
-pub struct VarDecl {
-    pub name: String,
-    pub section: VarSection,
-    /// The declared type as written (e.g. `BOOL`, `INT`, `ARRAY[0..9] OF INT`).
-    pub type_name: String,
-    /// Whether the type is an ARRAY, and its declared bounds `(lo, hi)` when
-    /// they are literal integers — used by the array-bounds rule.
-    pub array_bounds: Option<(i64, i64)>,
-    /// The initializer expression, if any (`:= <expr>`).
-    pub init: Option<Expr>,
-    pub line: u32,
-}
-
-#[derive(Debug, Clone, Copy, PartialEq, Eq)]
-pub enum VarSection {
-    Var,
-    Input,
-    Output,
-    InOut,
-    Global,
-    Temp,
-    External,
-}
-
-/// A statement.
-#[derive(Debug, Clone)]
-pub enum Stmt {
-    Assign {
-        target: Expr,
-        value: Expr,
-        line: u32,
-    },
-    If {
-        /// (condition, body) for IF and each ELSIF, in order.
-        branches: Vec<(Expr, Vec<Stmt>)>,
-        else_body: Option<Vec<Stmt>>,
-        line: u32,
-    },
-    Case {
-        selector: Expr,
-        /// (label expressions, body) per CASE arm.
-        arms: Vec<(Vec<Expr>, Vec<Stmt>)>,
-        else_body: Option<Vec<Stmt>>,
-        line: u32,
-    },
-    For {
-        var: String,
-        from: Expr,
-        to: Expr,
-        by: Option<Expr>,
-        body: Vec<Stmt>,
-        line: u32,
-    },
-    While {
-        cond: Expr,
-        body: Vec<Stmt>,
-        line: u32,
-    },
-    Repeat {
-        body: Vec<Stmt>,
-        until: Expr,
-        line: u32,
-    },
-    /// A bare call statement, e.g. `TON1(IN := x, PT := T#5s);`.
-    Call {
-        callee: String,
-        args: Vec<CallArg>,
-        line: u32,
-    },
-    Return {
-        line: u32,
-    },
-    Exit {
-        line: u32,
-    },
-    /// `JMP label;` — an unstructured jump.
-    Jump {
-        label: String,
-        line: u32,
-    },
-    /// `label:` — a jump target.
-    Label {
-        name: String,
-        line: u32,
-    },
-}
-
-/// One argument in a call: positional (`name: None`) or named (`X := expr`).
-#[derive(Debug, Clone)]
-pub struct CallArg {
-    pub name: Option<String>,
-    pub value: Expr,
-}
-
-/// An expression.
-#[derive(Debug, Clone)]
-pub enum Expr {
-    Int(i64, u32),
-    Real(f64, u32),
-    Bool(bool, u32),
-    /// A string literal, with the unquoted contents.
-    Str(String, u32),
-    /// A duration / date / time literal, kept as raw text (`T#5s`, `DT#...`).
-    Time(String, u32),
-    Ident(String, u32),
-    /// `base[index]`.
-    Index {
-        base: Box<Expr>,
-        index: Box<Expr>,
-        line: u32,
-    },
-    /// `base.field`.
-    Member {
-        base: Box<Expr>,
-        field: String,
-        line: u32,
-    },
-    Unary {
-        op: UnOp,
-        expr: Box<Expr>,
-        line: u32,
-    },
-    Binary {
-        op: BinOp,
-        lhs: Box<Expr>,
-        rhs: Box<Expr>,
-        line: u32,
-    },
-    /// A function call used as an expression, e.g. `LIMIT(a, b, c)`.
-    Call {
-        callee: String,
-        args: Vec<CallArg>,
-        line: u32,
-    },
-}
-
-impl Expr {
-    /// The 1-based source line this expression starts on.
-    pub fn line(&self) -> u32 {
-        match self {
-            Expr::Int(_, l)
-            | Expr::Real(_, l)
-            | Expr::Bool(_, l)
-            | Expr::Str(_, l)
-            | Expr::Time(_, l)
-            | Expr::Ident(_, l)
-            | Expr::Index { line: l, .. }
-            | Expr::Member { line: l, .. }
-            | Expr::Unary { line: l, .. }
-            | Expr::Binary { line: l, .. }
-            | Expr::Call { line: l, .. } => *l,
-        }
-    }
-
-    /// If this expression is a plain identifier, its name.
-    pub fn as_ident(&self) -> Option<&str> {
-        match self {
-            Expr::Ident(name, _) => Some(name.as_str()),
-            _ => None,
-        }
-    }
-}
-
-#[derive(Debug, Clone, Copy, PartialEq, Eq)]
-pub enum UnOp {
-    Not,
-    Neg,
-}
-
-#[derive(Debug, Clone, Copy, PartialEq, Eq)]
-pub enum BinOp {
-    Add,
-    Sub,
-    Mul,
-    Div,
-    Mod,
-    Pow,
-    Eq,
-    Ne,
-    Lt,
-    Le,
-    Gt,
-    Ge,
-    And,
-    Or,
-    Xor,
-}

compliance-agent/src/pipeline/plc/lexer.rs

@@ -1,372 +0,0 @@
-//! Lexer for IEC 61131-3 Structured Text.
-//!
-//! Tokenizes ST source into a flat token stream with 1-based line numbers.
-//! Keywords are case-insensitive. Handles `(* *)` and `//` comments, `'..'` and
-//! `".."` strings (with `''`/`""` escapes), based integers (`16#FF`, `2#1010`),
-//! and duration/date literals (`T#5s`, `DT#...`) kept as raw text.
-
-/// A lexed token with its source line.
-#[derive(Debug, Clone)]
-pub struct Token {
-    pub kind: Tok,
-    pub line: u32,
-}
-
-#[derive(Debug, Clone, PartialEq)]
-pub enum Tok {
-    Int(i64),
-    Real(f64),
-    Str(String),
-    Time(String),
-    Bool(bool),
-    Ident(String),
-    Kw(Keyword),
-    Assign, // :=
-    Plus,   // +
-    Minus,  // -
-    Star,   // *
-    Slash,  // /
-    Power,  // **
-    LParen, // (
-    RParen, // )
-    LBrack, // [
-    RBrack, // ]
-    Dot,    // .
-    DotDot, // ..
-    Comma,  // ,
-    Semi,   // ;
-    Colon,  // :
-    Lt,     // <
-    Le,     // <=
-    Gt,     // >
-    Ge,     // >=
-    Eq,     // =
-    Ne,     // <>
-    Amp,    // &
-    Eof,
-}
-
-#[derive(Debug, Clone, Copy, PartialEq, Eq)]
-pub enum Keyword {
-    Program,
-    EndProgram,
-    Function,
-    EndFunction,
-    FunctionBlock,
-    EndFunctionBlock,
-    Var,
-    VarInput,
-    VarOutput,
-    VarInOut,
-    VarGlobal,
-    VarTemp,
-    VarExternal,
-    Constant,
-    EndVar,
-    Array,
-    Of,
-    If,
-    Then,
-    Elsif,
-    Else,
-    EndIf,
-    Case,
-    EndCase,
-    For,
-    To,
-    By,
-    Do,
-    EndFor,
-    While,
-    EndWhile,
-    Repeat,
-    Until,
-    EndRepeat,
-    Return,
-    Exit,
-    Jmp,
-    Not,
-    And,
-    Or,
-    Xor,
-    Mod,
-    Type,
-    EndType,
-    Struct,
-    EndStruct,
-}
-
-fn keyword_from(word: &str) -> Option<Keyword> {
-    use Keyword::*;
-    Some(match word.to_ascii_uppercase().as_str() {
-        "PROGRAM" => Program,
-        "END_PROGRAM" => EndProgram,
-        "FUNCTION" => Function,
-        "END_FUNCTION" => EndFunction,
-        "FUNCTION_BLOCK" => FunctionBlock,
-        "END_FUNCTION_BLOCK" => EndFunctionBlock,
-        "VAR" => Var,
-        "VAR_INPUT" => VarInput,
-        "VAR_OUTPUT" => VarOutput,
-        "VAR_IN_OUT" => VarInOut,
-        "VAR_GLOBAL" => VarGlobal,
-        "VAR_TEMP" => VarTemp,
-        "VAR_EXTERNAL" => VarExternal,
-        "CONSTANT" => Constant,
-        "END_VAR" => EndVar,
-        "ARRAY" => Array,
-        "OF" => Of,
-        "IF" => If,
-        "THEN" => Then,
-        "ELSIF" => Elsif,
-        "ELSE" => Else,
-        "END_IF" => EndIf,
-        "CASE" => Case,
-        "END_CASE" => EndCase,
-        "FOR" => For,
-        "TO" => To,
-        "BY" => By,
-        "DO" => Do,
-        "END_FOR" => EndFor,
-        "WHILE" => While,
-        "END_WHILE" => EndWhile,
-        "REPEAT" => Repeat,
-        "UNTIL" => Until,
-        "END_REPEAT" => EndRepeat,
-        "RETURN" => Return,
-        "EXIT" => Exit,
-        "JMP" => Jmp,
-        "NOT" => Not,
-        "AND" => And,
-        "OR" => Or,
-        "XOR" => Xor,
-        "MOD" => Mod,
-        "TYPE" => Type,
-        "END_TYPE" => EndType,
-        "STRUCT" => Struct,
-        "END_STRUCT" => EndStruct,
-        _ => return None,
-    })
-}
-
-/// Tokenize `src`. Unknown characters are skipped (best-effort — a scanner must
-/// not die on odd input).
-pub fn lex(src: &str) -> Vec<Token> {
-    let chars: Vec<char> = src.chars().collect();
-    let mut i = 0usize;
-    let mut line = 1u32;
-    let mut out = Vec::new();
-
-    let bump_line = |c: char, line: &mut u32| {
-        if c == '\n' {
-            *line += 1;
-        }
-    };
-
-    while i < chars.len() {
-        let c = chars[i];
-
-        // Whitespace.
-        if c.is_whitespace() {
-            bump_line(c, &mut line);
-            i += 1;
-            continue;
-        }
-
-        // Line comment: //
-        if c == '/' && i + 1 < chars.len() && chars[i + 1] == '/' {
-            while i < chars.len() && chars[i] != '\n' {
-                i += 1;
-            }
-            continue;
-        }
-
-        // Block comment: (* ... *)
-        if c == '(' && i + 1 < chars.len() && chars[i + 1] == '*' {
-            i += 2;
-            while i + 1 < chars.len() && !(chars[i] == '*' && chars[i + 1] == ')') {
-                bump_line(chars[i], &mut line);
-                i += 1;
-            }
-            i = (i + 2).min(chars.len());
-            continue;
-        }
-
-        let tok_line = line;
-
-        // String literal: '...' or "..."
-        if c == '\'' || c == '"' {
-            let quote = c;
-            i += 1;
-            let mut s = String::new();
-            while i < chars.len() {
-                let ch = chars[i];
-                if ch == quote {
-                    // Doubled quote is an escaped quote.
-                    if i + 1 < chars.len() && chars[i + 1] == quote {
-                        s.push(quote);
-                        i += 2;
-                        continue;
-                    }
-                    i += 1;
-                    break;
-                }
-                bump_line(ch, &mut line);
-                s.push(ch);
-                i += 1;
-            }
-            out.push(Token {
-                kind: Tok::Str(s),
-                line: tok_line,
-            });
-            continue;
-        }
-
-        // Identifier / keyword / time literal / boolean.
-        if c.is_ascii_alphabetic() || c == '_' {
-            let start = i;
-            while i < chars.len() && (chars[i].is_ascii_alphanumeric() || chars[i] == '_') {
-                i += 1;
-            }
-            let word: String = chars[start..i].iter().collect();
-
-            // Duration/date/time literal prefix: T#, TIME#, DT#, D#, TOD#, LT# ...
-            if i < chars.len() && chars[i] == '#' {
-                let up = word.to_ascii_uppercase();
-                if matches!(
-                    up.as_str(),
-                    "T" | "TIME" | "DT" | "D" | "TOD" | "LT" | "DATE"
-                ) {
-                    let lit_start = start;
-                    i += 1; // consume '#'
-                    while i < chars.len()
-                        && (chars[i].is_ascii_alphanumeric()
-                            || chars[i] == '.'
-                            || chars[i] == '_'
-                            || chars[i] == ':')
-                    {
-                        i += 1;
-                    }
-                    let lit: String = chars[lit_start..i].iter().collect();
-                    out.push(Token {
-                        kind: Tok::Time(lit),
-                        line: tok_line,
-                    });
-                    continue;
-                }
-            }
-
-            let kind = match word.to_ascii_uppercase().as_str() {
-                "TRUE" => Tok::Bool(true),
-                "FALSE" => Tok::Bool(false),
-                _ => match keyword_from(&word) {
-                    Some(kw) => Tok::Kw(kw),
-                    None => Tok::Ident(word),
-                },
-            };
-            out.push(Token {
-                kind,
-                line: tok_line,
-            });
-            continue;
-        }
-
-        // Number: decimal, real, or based (16#..., 2#...).
-        if c.is_ascii_digit() {
-            let start = i;
-            while i < chars.len() && (chars[i].is_ascii_digit() || chars[i] == '_') {
-                i += 1;
-            }
-            // Based literal: <base>#<digits>
-            if i < chars.len() && chars[i] == '#' {
-                let base_str: String = chars[start..i].iter().filter(|c| **c != '_').collect();
-                i += 1;
-                let dstart = i;
-                while i < chars.len() && (chars[i].is_ascii_alphanumeric() || chars[i] == '_') {
-                    i += 1;
-                }
-                let digits: String = chars[dstart..i].iter().filter(|c| **c != '_').collect();
-                let radix = base_str.parse::<u32>().unwrap_or(10);
-                let val = i64::from_str_radix(&digits, radix.clamp(2, 36)).unwrap_or(0);
-                out.push(Token {
-                    kind: Tok::Int(val),
-                    line: tok_line,
-                });
-                continue;
-            }
-            // Real: has a '.' (not '..') or exponent.
-            let is_real =
-                i < chars.len() && chars[i] == '.' && !(i + 1 < chars.len() && chars[i + 1] == '.');
-            if is_real {
-                i += 1;
-                while i < chars.len() && (chars[i].is_ascii_digit() || chars[i] == '_') {
-                    i += 1;
-                }
-                let raw: String = chars[start..i].iter().filter(|c| **c != '_').collect();
-                out.push(Token {
-                    kind: Tok::Real(raw.parse().unwrap_or(0.0)),
-                    line: tok_line,
-                });
-                continue;
-            }
-            let raw: String = chars[start..i].iter().filter(|c| **c != '_').collect();
-            out.push(Token {
-                kind: Tok::Int(raw.parse().unwrap_or(0)),
-                line: tok_line,
-            });
-            continue;
-        }
-
-        // Operators / punctuation (longest match first).
-        let two: String = chars[i..(i + 2).min(chars.len())].iter().collect();
-        let kind = match two.as_str() {
-            ":=" => Some(Tok::Assign),
-            "<=" => Some(Tok::Le),
-            ">=" => Some(Tok::Ge),
-            "<>" => Some(Tok::Ne),
-            ".." => Some(Tok::DotDot),
-            "**" => Some(Tok::Power),
-            _ => None,
-        };
-        if let Some(k) = kind {
-            out.push(Token {
-                kind: k,
-                line: tok_line,
-            });
-            i += 2;
-            continue;
-        }
-        let one = match c {
-            '+' => Some(Tok::Plus),
-            '-' => Some(Tok::Minus),
-            '*' => Some(Tok::Star),
-            '/' => Some(Tok::Slash),
-            '(' => Some(Tok::LParen),
-            ')' => Some(Tok::RParen),
-            '[' => Some(Tok::LBrack),
-            ']' => Some(Tok::RBrack),
-            '.' => Some(Tok::Dot),
-            ',' => Some(Tok::Comma),
-            ';' => Some(Tok::Semi),
-            ':' => Some(Tok::Colon),
-            '<' => Some(Tok::Lt),
-            '>' => Some(Tok::Gt),
-            '=' => Some(Tok::Eq),
-            '&' => Some(Tok::Amp),
-            _ => None,
-        };
-        if let Some(k) = one {
-            out.push(Token {
-                kind: k,
-                line: tok_line,
-            });
-        }
-        i += 1;
-    }
-
-    out.push(Token {
-        kind: Tok::Eof,
-        line,
-    });
-    out
-}

compliance-agent/src/pipeline/plc/mod.rs

@@ -1,234 +0,0 @@
-//! PLC control-logic security scanner for IEC 61131-3 targets.
-//!
-//! Parses Structured Text (raw `.st`/`.scl`/`.exp` files and PLCopen-XML
-//! projects) into an AST and runs semantic control-logic security rules over it.
-//! Implements [`ScanType::PlcControlLogic`].
-
-pub mod ast;
-pub mod lexer;
-pub mod parser;
-pub mod plcopen;
-pub mod rules;
-pub mod sbom;
-
-use std::path::Path;
-
-use compliance_core::error::CoreError;
-use compliance_core::models::{Finding, ScanType};
-use compliance_core::traits::{ScanOutput, Scanner};
-
-use crate::pipeline::dedup;
-
-/// Scanner for `ScanType::PlcControlLogic`.
-pub struct PlcControlLogicScanner;
-
-impl Scanner for PlcControlLogicScanner {
-    fn name(&self) -> &str {
-        "plc-control-logic"
-    }
-
-    fn scan_type(&self) -> ScanType {
-        ScanType::PlcControlLogic
-    }
-
-    #[tracing::instrument(skip_all)]
-    async fn scan(&self, repo_path: &Path, repo_id: &str) -> Result<ScanOutput, CoreError> {
-        let findings = analyze_tree(repo_path, repo_id);
-        Ok(ScanOutput {
-            findings,
-            sbom_entries: Vec::new(),
-        })
-    }
-}
-
-/// Walk a PLC project tree and produce findings.
-pub(crate) fn analyze_tree(root: &Path, repo_id: &str) -> Vec<Finding> {
-    let mut findings = Vec::new();
-    for entry in walkdir::WalkDir::new(root)
-        .into_iter()
-        .filter_map(|e| e.ok())
-    {
-        if !entry.file_type().is_file() {
-            continue;
-        }
-        let path = entry.path();
-        let ext = path
-            .extension()
-            .and_then(|e| e.to_str())
-            .unwrap_or("")
-            .to_ascii_lowercase();
-        let is_st = matches!(ext.as_str(), "st" | "iecst" | "scl" | "exp" | "il");
-        let is_xml = matches!(ext.as_str(), "xml" | "plcopen" | "project");
-        if !is_st && !is_xml {
-            continue;
-        }
-        let Ok(content) = std::fs::read_to_string(path) else {
-            continue;
-        };
-        let pous = if is_xml {
-            plcopen::parse_plcopen(&content)
-        } else {
-            parser::parse(&content)
-        };
-        if pous.is_empty() {
-            continue;
-        }
-        let rel = path
-            .strip_prefix(root)
-            .unwrap_or(path)
-            .to_string_lossy()
-            .to_string();
-        for pou in &pous {
-            for hit in rules::analyze(pou) {
-                let line_s = hit.line.to_string();
-                let fingerprint =
-                    dedup::compute_fingerprint(&[repo_id, &rel, hit.rule_id, &pou.name, &line_s]);
-                let mut f = Finding::new(
-                    repo_id.to_string(),
-                    fingerprint,
-                    "plc-control-logic".to_string(),
-                    ScanType::PlcControlLogic,
-                    hit.title,
-                    hit.description,
-                    hit.severity,
-                );
-                f.file_path = Some(rel.clone());
-                f.line_number = Some(hit.line);
-                f.rule_id = Some(hit.rule_id.to_string());
-                f.cwe = hit.cwe.map(String::from);
-                f.remediation = Some(hit.remediation.to_string());
-                findings.push(f);
-            }
-        }
-    }
-    findings
-}
-
-#[cfg(test)]
-mod tests {
-    use super::*;
-    use std::collections::HashSet;
-    use std::path::PathBuf;
-
-    fn demo_dir() -> PathBuf {
-        PathBuf::from(env!("CARGO_MANIFEST_DIR"))
-            .parent()
-            .expect("workspace root")
-            .join("examples/plc-demo")
-    }
-
-    #[test]
-    fn scans_demo_project_end_to_end() {
-        let findings = analyze_tree(&demo_dir(), "demo-target");
-        assert!(!findings.is_empty(), "demo project should produce findings");
-
-        let rules: HashSet<&str> = findings
-            .iter()
-            .filter_map(|f| f.rule_id.as_deref())
-            .collect();
-        for r in [
-            "plc-hardcoded-credential",
-            "plc-default-password",
-            "plc-safety-bypass",
-            "plc-array-unchecked-index",
-            "plc-insecure-comm",
-            "plc-insecure-protocol-port",
-            "plc-unstructured-jump",
-            "plc-division-by-zero",
-        ] {
-            assert!(rules.contains(r), "expected rule {r}; got {rules:?}");
-        }
-
-        // Every finding is well-formed for storage.
-        for f in &findings {
-            assert_eq!(f.repo_id, "demo-target");
-            assert!(f.file_path.is_some(), "finding needs a file");
-            assert!(f.line_number.is_some(), "finding needs a line");
-        }
-
-        // The guarded division (IF ScaleFactor <> 0.0) must not be double-counted:
-        // exactly one division-by-zero (the unguarded MeasuredFlow divide).
-        let div0 = findings
-            .iter()
-            .filter(|f| f.rule_id.as_deref() == Some("plc-division-by-zero"))
-            .count();
-        assert_eq!(div0, 1, "only the unguarded division should be flagged");
-    }
-
-    /// The realistic OpenPLC-style traffic-light sample is mostly sound control
-    /// logic: the scanner must surface its few genuine defects and stay quiet on
-    /// the timed state machine and the guarded duty-cycle division.
-    #[test]
-    fn realistic_sample_flags_only_real_issues() {
-        let all = analyze_tree(&demo_dir(), "demo-target");
-        let tl: Vec<_> = all
-            .iter()
-            .filter(|f| {
-                f.file_path
-                    .as_deref()
-                    .is_some_and(|p| p.ends_with("traffic_light.st"))
-            })
-            .collect();
-        assert!(!tl.is_empty(), "traffic_light.st should produce findings");
-
-        let rules: HashSet<&str> = tl.iter().filter_map(|f| f.rule_id.as_deref()).collect();
-        // The three planted defects: hardcoded SCADA password, cleartext Modbus
-        // master (no auth), and a maintenance mode that drops the PedPermit.
-        for r in [
-            "plc-hardcoded-credential",
-            "plc-insecure-comm",
-            "plc-safety-bypass",
-        ] {
-            assert!(rules.contains(r), "expected rule {r}; got {rules:?}");
-        }
-        // Modbus/TCP on 502 is also an insecure-protocol port.
-        assert!(rules.contains("plc-insecure-protocol-port"));
-
-        // Low false positives: the guarded `IF LampCount <> 0` division and the
-        // JMP-free state machine must not trip anything.
-        assert_eq!(
-            tl.iter()
-                .filter(|f| f.rule_id.as_deref() == Some("plc-division-by-zero"))
-                .count(),
-            0,
-            "the guarded duty-cycle division must not be flagged"
-        );
-        assert!(
-            !rules.contains("plc-unstructured-jump"),
-            "the CASE state machine uses no JMP"
-        );
-    }
-
-    /// Graphical logic must be analysed too: an FBD POU (blocks + in/out
-    /// variables) is translated to synthetic ST, so the same rules fire on the
-    /// cleartext Modbus block, the hardcoded HMI password and the safety write.
-    #[test]
-    fn fbd_graphical_body_is_analysed() {
-        let all = analyze_tree(&demo_dir(), "demo-target");
-        let fbd: Vec<_> = all
-            .iter()
-            .filter(|f| {
-                f.file_path
-                    .as_deref()
-                    .is_some_and(|p| p.ends_with("pump_fbd.xml"))
-            })
-            .collect();
-        assert!(
-            !fbd.is_empty(),
-            "pump_fbd.xml (FBD) should produce findings"
-        );
-
-        let rules: HashSet<&str> = fbd.iter().filter_map(|f| f.rule_id.as_deref()).collect();
-        for r in [
-            "plc-insecure-comm",          // Modbus_TCP_Master(AUTH := FALSE)
-            "plc-insecure-protocol-port", // PORT := 502
-            "plc-hardcoded-credential",   // HmiPassword := 'admin123'
-            "plc-safety-bypass",          // Safety_Enable := FALSE
-        ] {
-            assert!(
-                rules.contains(r),
-                "expected rule {r} from FBD; got {rules:?}"
-            );
-        }
-    }
-}

compliance-agent/src/pipeline/plc/parser.rs

@@ -1,766 +0,0 @@
-//! Recursive-descent parser for the security-relevant subset of Structured Text.
-//!
-//! Tolerant by design: it parses the POUs, variable sections, and statement
-//! bodies it understands, and skips (with statement/POU-level recovery) anything
-//! it does not, so a single odd construct never sinks the whole file.
-
-use super::ast::*;
-use super::lexer::{Keyword as K, Tok, Token};
-
-pub struct Parser {
-    toks: Vec<Token>,
-    pos: usize,
-}
-
-impl Parser {
-    pub fn new(toks: Vec<Token>) -> Self {
-        Self { toks, pos: 0 }
-    }
-
-    // ── token helpers ──────────────────────────────────────────────
-    fn peek(&self) -> &Tok {
-        &self.toks[self.pos.min(self.toks.len() - 1)].kind
-    }
-    fn line(&self) -> u32 {
-        self.toks[self.pos.min(self.toks.len() - 1)].line
-    }
-    fn at_end(&self) -> bool {
-        matches!(self.peek(), Tok::Eof)
-    }
-    fn advance(&mut self) -> Tok {
-        let t = self.toks[self.pos.min(self.toks.len() - 1)].kind.clone();
-        if self.pos < self.toks.len() - 1 {
-            self.pos += 1;
-        }
-        t
-    }
-    fn eat(&mut self, t: &Tok) -> bool {
-        if self.peek() == t {
-            self.advance();
-            true
-        } else {
-            false
-        }
-    }
-    fn eat_kw(&mut self, k: K) -> bool {
-        if matches!(self.peek(), Tok::Kw(x) if *x == k) {
-            self.advance();
-            true
-        } else {
-            false
-        }
-    }
-    fn at_kw(&self, k: K) -> bool {
-        matches!(self.peek(), Tok::Kw(x) if *x == k)
-    }
-    fn ident(&mut self) -> Option<String> {
-        if let Tok::Ident(s) = self.peek() {
-            let s = s.clone();
-            self.advance();
-            Some(s)
-        } else {
-            None
-        }
-    }
-
-    // ── top level ──────────────────────────────────────────────────
-    /// Parse every POU in the token stream.
-    pub fn parse_units(&mut self) -> Vec<Pou> {
-        let mut pous = Vec::new();
-        while !self.at_end() {
-            match self.peek() {
-                Tok::Kw(K::Program) => {
-                    self.advance();
-                    if let Some(p) = self.parse_pou(PouKind::Program, K::EndProgram) {
-                        pous.push(p);
-                    }
-                }
-                Tok::Kw(K::Function) => {
-                    self.advance();
-                    if let Some(p) = self.parse_pou(PouKind::Function, K::EndFunction) {
-                        pous.push(p);
-                    }
-                }
-                Tok::Kw(K::FunctionBlock) => {
-                    self.advance();
-                    if let Some(p) = self.parse_pou(PouKind::FunctionBlock, K::EndFunctionBlock) {
-                        pous.push(p);
-                    }
-                }
-                // Skip TYPE...END_TYPE and anything else at top level.
-                _ => {
-                    self.advance();
-                }
-            }
-        }
-        pous
-    }
-
-    fn parse_pou(&mut self, kind: PouKind, end: K) -> Option<Pou> {
-        let line = self.line();
-        let name = self.ident().unwrap_or_else(|| "<anonymous>".to_string());
-        // Optional `: return_type` for functions.
-        if self.eat(&Tok::Colon) {
-            let _ = self.advance(); // return type token
-        }
-
-        let mut vars = Vec::new();
-        // Variable sections precede the body.
-        while let Some(section) = self.var_section_kw() {
-            self.advance();
-            let _ = self.eat_kw(K::Constant); // CONSTANT is informational for our rules
-            self.parse_var_decls(section, &mut vars);
-        }
-
-        // Body statements until END_<kind>.
-        let mut body = Vec::new();
-        while !self.at_end() && !self.at_kw(end) {
-            if let Some(s) = self.parse_stmt() {
-                body.push(s);
-            }
-        }
-        self.eat_kw(end);
-
-        Some(Pou {
-            name,
-            kind,
-            vars,
-            body,
-            line,
-        })
-    }
-
-    fn var_section_kw(&self) -> Option<VarSection> {
-        match self.peek() {
-            Tok::Kw(K::Var) => Some(VarSection::Var),
-            Tok::Kw(K::VarInput) => Some(VarSection::Input),
-            Tok::Kw(K::VarOutput) => Some(VarSection::Output),
-            Tok::Kw(K::VarInOut) => Some(VarSection::InOut),
-            Tok::Kw(K::VarGlobal) => Some(VarSection::Global),
-            Tok::Kw(K::VarTemp) => Some(VarSection::Temp),
-            Tok::Kw(K::VarExternal) => Some(VarSection::External),
-            _ => None,
-        }
-    }
-
-    fn parse_var_decls(&mut self, section: VarSection, out: &mut Vec<VarDecl>) {
-        while !self.at_end() && !self.at_kw(K::EndVar) {
-            let line = self.line();
-            // names: a, b, c
-            let mut names = Vec::new();
-            match self.ident() {
-                Some(n) => names.push(n),
-                None => {
-                    // Not a declaration we understand — skip to next ; or END_VAR.
-                    self.sync_decl();
-                    continue;
-                }
-            }
-            while self.eat(&Tok::Comma) {
-                if let Some(n) = self.ident() {
-                    names.push(n);
-                }
-            }
-            if !self.eat(&Tok::Colon) {
-                self.sync_decl();
-                continue;
-            }
-            let (type_name, array_bounds) = self.parse_type();
-            let init = if self.eat(&Tok::Assign) {
-                Some(self.parse_expr())
-            } else {
-                None
-            };
-            self.eat(&Tok::Semi);
-            for n in names {
-                out.push(VarDecl {
-                    name: n,
-                    section,
-                    type_name: type_name.clone(),
-                    array_bounds,
-                    init: init.clone(),
-                    line,
-                });
-            }
-        }
-        self.eat_kw(K::EndVar);
-    }
-
-    /// Parse a (possibly ARRAY) type, returning its rendered name and literal
-    /// bounds when present.
-    fn parse_type(&mut self) -> (String, Option<(i64, i64)>) {
-        if self.eat_kw(K::Array) {
-            let mut bounds = None;
-            if self.eat(&Tok::LBrack) {
-                let lo = self.int_lit();
-                self.eat(&Tok::DotDot);
-                let hi = self.int_lit();
-                if let (Some(lo), Some(hi)) = (lo, hi) {
-                    bounds = Some((lo, hi));
-                }
-                // Skip any further dimensions / tokens to the closing bracket.
-                while !self.at_end() && !self.eat(&Tok::RBrack) {
-                    self.advance();
-                }
-            }
-            self.eat_kw(K::Of);
-            let elem = self.type_ident();
-            (format!("ARRAY OF {elem}"), bounds)
-        } else {
-            (self.type_ident(), None)
-        }
-    }
-
-    fn type_ident(&mut self) -> String {
-        // Types can be qualified idents; keep it simple: one token, plus any
-        // string-length suffix like STRING[80].
-        let base = match self.advance() {
-            Tok::Ident(s) => s,
-            Tok::Kw(_) => "TYPE".to_string(),
-            other => format!("{other:?}"),
-        };
-        if self.eat(&Tok::LBrack) {
-            while !self.at_end() && !self.eat(&Tok::RBrack) {
-                self.advance();
-            }
-        }
-        base
-    }
-
-    fn int_lit(&mut self) -> Option<i64> {
-        match self.peek() {
-            Tok::Int(n) => {
-                let n = *n;
-                self.advance();
-                Some(n)
-            }
-            Tok::Minus => {
-                self.advance();
-                if let Tok::Int(n) = self.peek() {
-                    let n = -*n;
-                    self.advance();
-                    Some(n)
-                } else {
-                    None
-                }
-            }
-            _ => None,
-        }
-    }
-
-    fn sync_decl(&mut self) {
-        while !self.at_end() && !self.eat(&Tok::Semi) && !self.at_kw(K::EndVar) {
-            self.advance();
-        }
-    }
-    fn sync_stmt(&mut self) {
-        while !self.at_end() && !self.eat(&Tok::Semi) {
-            // Stop at block terminators so recovery doesn't swallow structure.
-            if matches!(
-                self.peek(),
-                Tok::Kw(
-                    K::EndIf
-                        | K::EndFor
-                        | K::EndWhile
-                        | K::EndCase
-                        | K::EndRepeat
-                        | K::EndProgram
-                        | K::EndFunction
-                        | K::EndFunctionBlock
-                        | K::Else
-                        | K::Elsif
-                )
-            ) {
-                return;
-            }
-            self.advance();
-        }
-    }
-
-    // ── statements ─────────────────────────────────────────────────
-    fn parse_stmt(&mut self) -> Option<Stmt> {
-        let line = self.line();
-        match self.peek().clone() {
-            Tok::Semi => {
-                self.advance();
-                None
-            }
-            Tok::Kw(K::If) => self.parse_if(),
-            Tok::Kw(K::Case) => self.parse_case(),
-            Tok::Kw(K::For) => self.parse_for(),
-            Tok::Kw(K::While) => self.parse_while(),
-            Tok::Kw(K::Repeat) => self.parse_repeat(),
-            Tok::Kw(K::Return) => {
-                self.advance();
-                self.eat(&Tok::Semi);
-                Some(Stmt::Return { line })
-            }
-            Tok::Kw(K::Exit) => {
-                self.advance();
-                self.eat(&Tok::Semi);
-                Some(Stmt::Exit { line })
-            }
-            Tok::Kw(K::Jmp) => {
-                self.advance();
-                let label = self.ident().unwrap_or_default();
-                self.eat(&Tok::Semi);
-                Some(Stmt::Jump { label, line })
-            }
-            Tok::Ident(name) => {
-                // Could be `label:`, `call(...)`, or an assignment.
-                // Lookahead: ident ':' (not ':=') → label.
-                if matches!(
-                    self.toks.get(self.pos + 1).map(|t| &t.kind),
-                    Some(Tok::Colon)
-                ) && !matches!(self.toks.get(self.pos + 2).map(|t| &t.kind), Some(Tok::Eq))
-                {
-                    self.advance(); // ident
-                    self.advance(); // ':'
-                    return Some(Stmt::Label { name, line });
-                }
-                let lhs = self.parse_expr();
-                if self.eat(&Tok::Assign) {
-                    let value = self.parse_expr();
-                    self.eat(&Tok::Semi);
-                    Some(Stmt::Assign {
-                        target: lhs,
-                        value,
-                        line,
-                    })
-                } else if let Expr::Call { callee, args, .. } = lhs {
-                    self.eat(&Tok::Semi);
-                    Some(Stmt::Call { callee, args, line })
-                } else {
-                    // Bare expression / FB invocation without args recognized —
-                    // skip to the terminator.
-                    self.sync_stmt();
-                    None
-                }
-            }
-            _ => {
-                self.sync_stmt();
-                None
-            }
-        }
-    }
-
-    fn parse_block_until(&mut self, terms: &[K]) -> Vec<Stmt> {
-        let mut body = Vec::new();
-        while !self.at_end() && !terms.iter().any(|k| self.at_kw(*k)) {
-            if let Some(s) = self.parse_stmt() {
-                body.push(s);
-            }
-        }
-        body
-    }
-
-    fn parse_if(&mut self) -> Option<Stmt> {
-        let line = self.line();
-        self.eat_kw(K::If);
-        let mut branches = Vec::new();
-        let cond = self.parse_expr();
-        self.eat_kw(K::Then);
-        let body = self.parse_block_until(&[K::Elsif, K::Else, K::EndIf]);
-        branches.push((cond, body));
-        while self.eat_kw(K::Elsif) {
-            let c = self.parse_expr();
-            self.eat_kw(K::Then);
-            let b = self.parse_block_until(&[K::Elsif, K::Else, K::EndIf]);
-            branches.push((c, b));
-        }
-        let else_body = if self.eat_kw(K::Else) {
-            Some(self.parse_block_until(&[K::EndIf]))
-        } else {
-            None
-        };
-        self.eat_kw(K::EndIf);
-        self.eat(&Tok::Semi);
-        Some(Stmt::If {
-            branches,
-            else_body,
-            line,
-        })
-    }
-
-    fn parse_case(&mut self) -> Option<Stmt> {
-        let line = self.line();
-        self.eat_kw(K::Case);
-        let selector = self.parse_expr();
-        self.eat_kw(K::Of);
-        let mut arms = Vec::new();
-        let mut else_body = None;
-        while !self.at_end() && !self.at_kw(K::EndCase) {
-            if self.eat_kw(K::Else) {
-                else_body = Some(self.parse_block_until(&[K::EndCase]));
-                break;
-            }
-            // labels: expr {, expr} :
-            let mut labels = vec![self.parse_expr()];
-            while self.eat(&Tok::Comma) {
-                labels.push(self.parse_expr());
-            }
-            self.eat(&Tok::Colon);
-            let body = self.parse_block_until(&[K::EndCase, K::Else]);
-            arms.push((labels, body));
-        }
-        self.eat_kw(K::EndCase);
-        self.eat(&Tok::Semi);
-        Some(Stmt::Case {
-            selector,
-            arms,
-            else_body,
-            line,
-        })
-    }
-
-    fn parse_for(&mut self) -> Option<Stmt> {
-        let line = self.line();
-        self.eat_kw(K::For);
-        let var = self.ident().unwrap_or_default();
-        self.eat(&Tok::Assign);
-        let from = self.parse_expr();
-        self.eat_kw(K::To);
-        let to = self.parse_expr();
-        let by = if self.eat_kw(K::By) {
-            Some(self.parse_expr())
-        } else {
-            None
-        };
-        self.eat_kw(K::Do);
-        let body = self.parse_block_until(&[K::EndFor]);
-        self.eat_kw(K::EndFor);
-        self.eat(&Tok::Semi);
-        Some(Stmt::For {
-            var,
-            from,
-            to,
-            by,
-            body,
-            line,
-        })
-    }
-
-    fn parse_while(&mut self) -> Option<Stmt> {
-        let line = self.line();
-        self.eat_kw(K::While);
-        let cond = self.parse_expr();
-        self.eat_kw(K::Do);
-        let body = self.parse_block_until(&[K::EndWhile]);
-        self.eat_kw(K::EndWhile);
-        self.eat(&Tok::Semi);
-        Some(Stmt::While { cond, body, line })
-    }
-
-    fn parse_repeat(&mut self) -> Option<Stmt> {
-        let line = self.line();
-        self.eat_kw(K::Repeat);
-        let body = self.parse_block_until(&[K::Until, K::EndRepeat]);
-        self.eat_kw(K::Until);
-        let until = self.parse_expr();
-        self.eat_kw(K::EndRepeat);
-        self.eat(&Tok::Semi);
-        Some(Stmt::Repeat { body, until, line })
-    }
-
-    // ── expressions (precedence climbing) ──────────────────────────
-    pub fn parse_expr(&mut self) -> Expr {
-        self.parse_or()
-    }
-
-    fn parse_or(&mut self) -> Expr {
-        let mut lhs = self.parse_and();
-        loop {
-            let op = match self.peek() {
-                Tok::Kw(K::Or) => BinOp::Or,
-                Tok::Kw(K::Xor) => BinOp::Xor,
-                _ => break,
-            };
-            let line = self.line();
-            self.advance();
-            let rhs = self.parse_and();
-            lhs = Expr::Binary {
-                op,
-                lhs: Box::new(lhs),
-                rhs: Box::new(rhs),
-                line,
-            };
-        }
-        lhs
-    }
-
-    fn parse_and(&mut self) -> Expr {
-        let mut lhs = self.parse_cmp();
-        while matches!(self.peek(), Tok::Kw(K::And) | Tok::Amp) {
-            let op = BinOp::And;
-            let line = self.line();
-            self.advance();
-            let rhs = self.parse_cmp();
-            lhs = Expr::Binary {
-                op,
-                lhs: Box::new(lhs),
-                rhs: Box::new(rhs),
-                line,
-            };
-        }
-        lhs
-    }
-
-    fn parse_cmp(&mut self) -> Expr {
-        let mut lhs = self.parse_add();
-        loop {
-            let op = match self.peek() {
-                Tok::Eq => BinOp::Eq,
-                Tok::Ne => BinOp::Ne,
-                Tok::Lt => BinOp::Lt,
-                Tok::Le => BinOp::Le,
-                Tok::Gt => BinOp::Gt,
-                Tok::Ge => BinOp::Ge,
-                _ => break,
-            };
-            let line = self.line();
-            self.advance();
-            let rhs = self.parse_add();
-            lhs = Expr::Binary {
-                op,
-                lhs: Box::new(lhs),
-                rhs: Box::new(rhs),
-                line,
-            };
-        }
-        lhs
-    }
-
-    fn parse_add(&mut self) -> Expr {
-        let mut lhs = self.parse_mul();
-        loop {
-            let op = match self.peek() {
-                Tok::Plus => BinOp::Add,
-                Tok::Minus => BinOp::Sub,
-                _ => break,
-            };
-            let line = self.line();
-            self.advance();
-            let rhs = self.parse_mul();
-            lhs = Expr::Binary {
-                op,
-                lhs: Box::new(lhs),
-                rhs: Box::new(rhs),
-                line,
-            };
-        }
-        lhs
-    }
-
-    fn parse_mul(&mut self) -> Expr {
-        let mut lhs = self.parse_unary();
-        loop {
-            let op = match self.peek() {
-                Tok::Star => BinOp::Mul,
-                Tok::Slash => BinOp::Div,
-                Tok::Kw(K::Mod) => BinOp::Mod,
-                Tok::Power => BinOp::Pow,
-                _ => break,
-            };
-            let line = self.line();
-            self.advance();
-            let rhs = self.parse_unary();
-            lhs = Expr::Binary {
-                op,
-                lhs: Box::new(lhs),
-                rhs: Box::new(rhs),
-                line,
-            };
-        }
-        lhs
-    }
-
-    fn parse_unary(&mut self) -> Expr {
-        let line = self.line();
-        match self.peek() {
-            Tok::Kw(K::Not) => {
-                self.advance();
-                Expr::Unary {
-                    op: UnOp::Not,
-                    expr: Box::new(self.parse_unary()),
-                    line,
-                }
-            }
-            Tok::Minus => {
-                self.advance();
-                Expr::Unary {
-                    op: UnOp::Neg,
-                    expr: Box::new(self.parse_unary()),
-                    line,
-                }
-            }
-            _ => self.parse_postfix(),
-        }
-    }
-
-    fn parse_postfix(&mut self) -> Expr {
-        let mut e = self.parse_primary();
-        loop {
-            let line = self.line();
-            match self.peek() {
-                Tok::LBrack => {
-                    self.advance();
-                    let index = self.parse_expr();
-                    self.eat(&Tok::RBrack);
-                    e = Expr::Index {
-                        base: Box::new(e),
-                        index: Box::new(index),
-                        line,
-                    };
-                }
-                Tok::Dot => {
-                    self.advance();
-                    let field = self.ident().unwrap_or_default();
-                    e = Expr::Member {
-                        base: Box::new(e),
-                        field,
-                        line,
-                    };
-                }
-                _ => break,
-            }
-        }
-        e
-    }
-
-    fn parse_primary(&mut self) -> Expr {
-        let line = self.line();
-        match self.advance() {
-            Tok::Int(n) => Expr::Int(n, line),
-            Tok::Real(r) => Expr::Real(r, line),
-            Tok::Bool(b) => Expr::Bool(b, line),
-            Tok::Str(s) => Expr::Str(s, line),
-            Tok::Time(t) => Expr::Time(t, line),
-            Tok::LParen => {
-                let e = self.parse_expr();
-                self.eat(&Tok::RParen);
-                e
-            }
-            Tok::Ident(name) => {
-                if self.eat(&Tok::LParen) {
-                    let args = self.parse_call_args();
-                    Expr::Call {
-                        callee: name,
-                        args,
-                        line,
-                    }
-                } else {
-                    Expr::Ident(name, line)
-                }
-            }
-            // Unrecognized start of expression — yield a placeholder identifier.
-            _ => Expr::Ident(String::new(), line),
-        }
-    }
-
-    fn parse_call_args(&mut self) -> Vec<CallArg> {
-        let mut args = Vec::new();
-        if self.eat(&Tok::RParen) {
-            return args;
-        }
-        loop {
-            // Named arg: ident := expr  (peek two tokens).
-            if let Tok::Ident(name) = self.peek().clone() {
-                if matches!(
-                    self.toks.get(self.pos + 1).map(|t| &t.kind),
-                    Some(Tok::Assign)
-                ) {
-                    self.advance(); // ident
-                    self.advance(); // :=
-                    let value = self.parse_expr();
-                    args.push(CallArg {
-                        name: Some(name),
-                        value,
-                    });
-                    if self.eat(&Tok::Comma) {
-                        continue;
-                    }
-                    break;
-                }
-            }
-            let value = self.parse_expr();
-            args.push(CallArg { name: None, value });
-            if self.eat(&Tok::Comma) {
-                continue;
-            }
-            break;
-        }
-        self.eat(&Tok::RParen);
-        args
-    }
-}
-
-/// Parse ST source into its POUs.
-pub fn parse(src: &str) -> Vec<Pou> {
-    let toks = super::lexer::lex(src);
-    Parser::new(toks).parse_units()
-}
-
-#[cfg(test)]
-mod tests {
-    use super::*;
-
-    const SAMPLE: &str = r#"
-PROGRAM Main
-VAR
-    idx : INT;
-    pw : STRING := 'admin123';
-    buf : ARRAY[0..9] OF INT;
-    ok : BOOL := FALSE;
-END_VAR
-    // a comment
-    IF idx > 0 THEN
-        buf[idx] := idx * 2;
-    ELSE
-        JMP done;
-    END_IF;
-    Comm(IP := '10.0.0.1', PORT := 502);
-done:
-    ok := TRUE;
-END_PROGRAM
-"#;
-
-    #[test]
-    fn parses_program_vars_and_body() {
-        let pous = parse(SAMPLE);
-        assert_eq!(pous.len(), 1, "one POU");
-        let p = &pous[0];
-        assert_eq!(p.name, "Main");
-        assert_eq!(p.kind, PouKind::Program);
-        // vars: idx, pw, buf, ok
-        assert_eq!(p.vars.len(), 4);
-        let pw = p.vars.iter().find(|v| v.name == "pw").expect("pw");
-        assert!(matches!(&pw.init, Some(Expr::Str(s, _)) if s == "admin123"));
-        let buf = p.vars.iter().find(|v| v.name == "buf").expect("buf");
-        assert_eq!(buf.array_bounds, Some((0, 9)));
-        // body has an IF, a Call, a Label, and an Assign
-        assert!(p.body.iter().any(|s| matches!(s, Stmt::If { .. })));
-        assert!(p
-            .body
-            .iter()
-            .any(|s| matches!(s, Stmt::Call { callee, .. } if callee == "Comm")));
-        assert!(p
-            .body
-            .iter()
-            .any(|s| matches!(s, Stmt::Label { name, .. } if name == "done")));
-    }
-
-    #[test]
-    fn jmp_inside_if_is_captured() {
-        let pous = parse(SAMPLE);
-        let p = &pous[0];
-        // find the IF, check its else branch has a JMP
-        let has_jmp = p.body.iter().any(|s| match s {
-            Stmt::If { else_body, .. } => else_body
-                .as_ref()
-                .map(|b| b.iter().any(|s| matches!(s, Stmt::Jump { .. })))
-                .unwrap_or(false),
-            _ => false,
-        });
-        assert!(has_jmp, "JMP should be parsed inside the ELSE branch");
-    }
-}

compliance-agent/src/pipeline/plc/plcopen.rs

@@ -1,418 +0,0 @@
-//! PLCopen XML → Structured Text POUs.
-//!
-//! A PLCopen project stores each POU as `<pou name=".." pouType="..">` with an
-//! `<interface>` (typed variable sections) and a `<body>` in one of the IEC
-//! 61131-3 languages. We reconstruct an equivalent Structured-Text source for
-//! each POU (a `VAR` block from the interface + statements from the body) and run
-//! it through the ST parser, so raw `.st` files and PLCopen projects — textual or
-//! graphical — flow through one analysis path.
-//!
-//! Body languages:
-//! - **ST** — taken verbatim.
-//! - **FBD / LD** — the graphical network is translated to synthetic ST: blocks
-//!   become calls (`TypeName(pin := arg, …)`), out-variables / coils become
-//!   assignments, with input pins resolved by tracing connections. This lets the
-//!   semantic rules see comm calls, hardcoded arguments and safety writes that
-//!   live in graphical logic, not just in text.
-//! - **SFC** — the step/transition graph itself is skipped; the ST/FBD/LD bodies
-//!   embedded in its actions and transitions are still translated.
-
-use std::collections::HashMap;
-
-use roxmltree::Node;
-
-use super::ast::Pou;
-use super::parser;
-
-/// Parse every POU out of a PLCopen XML document (ST, FBD or LD bodies).
-pub fn parse_plcopen(xml: &str) -> Vec<Pou> {
-    let doc = match roxmltree::Document::parse(xml) {
-        Ok(d) => d,
-        Err(_) => return Vec::new(),
-    };
-    let mut pous = Vec::new();
-    for pou in doc.descendants().filter(|n| n.has_tag_name("pou")) {
-        let name = pou.attribute("name").unwrap_or("pou").to_string();
-        let pou_type = pou.attribute("pouType").unwrap_or("program");
-
-        let Some(body) = reconstruct_body(pou) else {
-            continue;
-        };
-        if body.trim().is_empty() {
-            continue;
-        }
-
-        let var_block = build_var_block(pou);
-        let kw = match pou_type.to_ascii_lowercase().as_str() {
-            "function" => "FUNCTION",
-            "functionblock" | "functionblocktype" => "FUNCTION_BLOCK",
-            _ => "PROGRAM",
-        };
-        let synthetic = format!("{kw} {name}\n{var_block}{body}\nEND_{kw}\n");
-        pous.extend(parser::parse(&synthetic));
-    }
-    pous
-}
-
-/// Case-insensitive tag match (PLCopen uses `FBD`/`LD`/`ST`, CODESYS may vary).
-fn tag_is(n: &Node, name: &str) -> bool {
-    n.tag_name().name().eq_ignore_ascii_case(name)
-}
-
-/// Reconstruct a POU's body as Structured Text, whatever language it is written
-/// in. Concatenates every language body found under `<body>` (SFC actions and
-/// transitions carry their own ST/FBD/LD sub-bodies).
-fn reconstruct_body(pou: Node) -> Option<String> {
-    let mut out = String::new();
-    for body in pou.descendants().filter(|n| tag_is(n, "body")) {
-        for lang in body.children().filter(|n| n.is_element()) {
-            let piece = match lang.tag_name().name().to_ascii_uppercase().as_str() {
-                "ST" | "IL" => collect_text(lang),
-                "FBD" | "LD" => translate_network(lang),
-                _ => continue,
-            };
-            if !piece.trim().is_empty() {
-                out.push_str(&piece);
-                if !piece.ends_with('\n') {
-                    out.push('\n');
-                }
-            }
-        }
-    }
-    if out.trim().is_empty() {
-        None
-    } else {
-        Some(out)
-    }
-}
-
-// ── graphical (FBD / LD) → synthetic ST ────────────────────────────────
-
-/// Translate one FBD/LD network into ST statements: blocks → calls,
-/// out-variables and coils → assignments.
-fn translate_network(net: Node) -> String {
-    let by_id = index_local_ids(net);
-    let mut out = String::new();
-    for el in net.children().filter(|n| n.is_element()) {
-        let stmt = match el.tag_name().name().to_ascii_lowercase().as_str() {
-            "block" => block_call(el, &by_id).map(|c| format!("{c};")),
-            "outvariable" => out_assignment(el, &by_id),
-            "coil" => coil_assignment(el, &by_id),
-            _ => None,
-        };
-        if let Some(s) = stmt {
-            out.push_str(&s);
-            out.push('\n');
-        }
-    }
-    out
-}
-
-/// Index every element in a network by its `localId` so connections resolve.
-fn index_local_ids<'a, 'input>(net: Node<'a, 'input>) -> HashMap<String, Node<'a, 'input>> {
-    net.descendants()
-        .filter(|n| n.is_element())
-        .filter_map(|n| n.attribute("localId").map(|id| (id.to_string(), n)))
-        .collect()
-}
-
-/// Build a call expression for a block: `TypeName(pin := arg, …)`.
-fn block_call(block: Node, by_id: &HashMap<String, Node>) -> Option<String> {
-    let ty = block.attribute("typeName")?;
-    let mut args = Vec::new();
-    if let Some(inputs) = block.children().find(|n| tag_is(n, "inputVariables")) {
-        for v in inputs.children().filter(|n| tag_is(n, "variable")) {
-            let Some(expr) = input_expr(v, by_id, 0) else {
-                continue;
-            };
-            match v.attribute("formalParameter") {
-                Some(pin) if !pin.is_empty() => args.push(format!("{pin} := {expr}")),
-                _ => args.push(expr),
-            }
-        }
-    }
-    Some(format!("{ty}({})", args.join(", ")))
-}
-
-/// `target := <traced expression>;` for an FBD out-variable.
-fn out_assignment(outvar: Node, by_id: &HashMap<String, Node>) -> Option<String> {
-    let target = expression_text(outvar)?;
-    let value = input_expr(outvar, by_id, 0).unwrap_or_else(|| "0".to_string());
-    Some(format!("{target} := {value};"))
-}
-
-/// `coil := <traced rung expression>;` for an LD coil (negated → `NOT (…)`).
-fn coil_assignment(coil: Node, by_id: &HashMap<String, Node>) -> Option<String> {
-    let target = child_text(coil, "variable")?;
-    let rung = input_expr(coil, by_id, 0).unwrap_or_else(|| "TRUE".to_string());
-    let negated = matches!(coil.attribute("negated"), Some(v) if v.eq_ignore_ascii_case("true"));
-    let rhs = if negated {
-        format!("NOT ({rung})")
-    } else {
-        rung
-    };
-    Some(format!("{target} := {rhs};"))
-}
-
-/// Resolve the expression feeding `node`'s single input connection.
-fn input_expr(node: Node, by_id: &HashMap<String, Node>, depth: u8) -> Option<String> {
-    let refid = ref_local_id(node)?;
-    Some(expr_for(&refid, by_id, depth))
-}
-
-/// Build the ST expression produced by the element with this `localId`.
-fn expr_for(local_id: &str, by_id: &HashMap<String, Node>, depth: u8) -> String {
-    if depth > 24 {
-        return "0".to_string();
-    }
-    let Some(node) = by_id.get(local_id) else {
-        return format!("__net{local_id}");
-    };
-    match node.tag_name().name().to_ascii_lowercase().as_str() {
-        "invariable" | "inoutvariable" => {
-            expression_text(*node).unwrap_or_else(|| format!("__net{local_id}"))
-        }
-        // A block feeding another element: reference it by a synthetic result
-        // name; the block is emitted as its own call statement, so we neither
-        // duplicate the call nor lose it.
-        "block" => format!("__blk{local_id}"),
-        "contact" => {
-            let var = child_text(*node, "variable").unwrap_or_else(|| "TRUE".to_string());
-            let negated =
-                matches!(node.attribute("negated"), Some(v) if v.eq_ignore_ascii_case("true"));
-            let term = if negated { format!("NOT {var}") } else { var };
-            match ref_local_id(*node) {
-                Some(up) => {
-                    let upstream = expr_for(&up, by_id, depth + 1);
-                    if upstream == "TRUE" {
-                        term
-                    } else {
-                        format!("({upstream} AND {term})")
-                    }
-                }
-                None => term,
-            }
-        }
-        "leftpowerrail" => "TRUE".to_string(),
-        _ => format!("__net{local_id}"),
-    }
-}
-
-/// The `refLocalId` of `node`'s first input connection, if any.
-fn ref_local_id(node: Node) -> Option<String> {
-    node.descendants()
-        .find(|n| tag_is(n, "connectionPointIn"))
-        .and_then(|cpi| cpi.descendants().find(|n| tag_is(n, "connection")))
-        .and_then(|c| c.attribute("refLocalId"))
-        .map(|s| s.to_string())
-}
-
-/// Text of a node's `<expression>` child (variable name or literal).
-fn expression_text(node: Node) -> Option<String> {
-    let e = node.children().find(|n| tag_is(n, "expression"))?;
-    let t = collect_text(e).trim().to_string();
-    if t.is_empty() {
-        None
-    } else {
-        Some(t)
-    }
-}
-
-/// Text of a named child element (e.g. `<variable>` of a contact/coil).
-fn child_text(node: Node, name: &str) -> Option<String> {
-    let c = node.children().find(|n| tag_is(n, name))?;
-    let t = collect_text(c).trim().to_string();
-    if t.is_empty() {
-        None
-    } else {
-        Some(t)
-    }
-}
-
-/// Concatenate the text of a node's descendant text nodes (bodies are often
-/// wrapped in `<xhtml>` and may contain multiple text runs). Only text nodes are
-/// gathered: an element's `.text()` would re-yield its first child's text, which
-/// (with the text node itself) would duplicate every value.
-fn collect_text(node: Node) -> String {
-    node.descendants()
-        .filter(|n| n.is_text())
-        .filter_map(|n| n.text())
-        .collect::<String>()
-}
-
-/// Build an ST `VAR … END_VAR` block from a POU's `<interface>` variable
-/// sections, so declarations (types, initial values) reach the rules.
-fn build_var_block(pou: Node) -> String {
-    let Some(interface) = pou.children().find(|n| n.has_tag_name("interface")) else {
-        return String::new();
-    };
-    let mut out = String::from("VAR\n");
-    let mut any = false;
-    for container in interface.children().filter(|n| n.is_element()) {
-        // localVars / inputVars / outputVars / inOutVars / tempVars / globalVars / externalVars
-        if !container.tag_name().name().ends_with("Vars") {
-            continue;
-        }
-        for var in container.children().filter(|n| n.has_tag_name("variable")) {
-            let Some(vname) = var.attribute("name") else {
-                continue;
-            };
-            let ty = var
-                .children()
-                .find(|n| n.has_tag_name("type"))
-                .map(type_name)
-                .unwrap_or_else(|| "BOOL".to_string());
-            let init = var
-                .children()
-                .find(|n| n.has_tag_name("initialValue"))
-                .and_then(initial_value);
-            match init {
-                Some(v) => out.push_str(&format!("  {vname} : {ty} := {v};\n")),
-                None => out.push_str(&format!("  {vname} : {ty};\n")),
-            }
-            any = true;
-        }
-    }
-    out.push_str("END_VAR\n");
-    if any {
-        out
-    } else {
-        String::new()
-    }
-}
-
-/// Render a PLCopen `<type>` element as an ST type string.
-fn type_name(type_node: Node) -> String {
-    let Some(inner) = type_node.children().find(|n| n.is_element()) else {
-        return "BOOL".to_string();
-    };
-    let tag = inner.tag_name().name();
-    match tag {
-        "derived" => inner.attribute("name").unwrap_or("DERIVED").to_string(),
-        "array" => {
-            let dim = inner.children().find(|n| n.has_tag_name("dimension"));
-            let (lo, hi) = dim
-                .map(|d| {
-                    (
-                        d.attribute("lower").unwrap_or("0").to_string(),
-                        d.attribute("upper").unwrap_or("0").to_string(),
-                    )
-                })
-                .unwrap_or_else(|| ("0".to_string(), "0".to_string()));
-            let base = inner
-                .children()
-                .find(|n| n.has_tag_name("baseType"))
-                .map(type_name)
-                .unwrap_or_else(|| "INT".to_string());
-            format!("ARRAY[{lo}..{hi}] OF {base}")
-        }
-        "string" | "wstring" => "STRING".to_string(),
-        // BOOL, INT, DINT, REAL, TIME, ... — the tag name is the ST type.
-        other => other.to_ascii_uppercase(),
-    }
-}
-
-/// Extract an initial value as an ST literal (quoting strings).
-fn initial_value(iv: Node) -> Option<String> {
-    let simple = iv.descendants().find(|n| n.has_tag_name("simpleValue"))?;
-    let raw = simple.attribute("value")?.trim().to_string();
-    if raw.is_empty() {
-        return None;
-    }
-    // Numbers / booleans / time literals pass through; everything else is a
-    // string literal.
-    let is_scalar = raw.eq_ignore_ascii_case("true")
-        || raw.eq_ignore_ascii_case("false")
-        || raw.starts_with(['T', 't', 'D', 'd']) && raw.contains('#')
-        || raw
-            .chars()
-            .all(|c| c.is_ascii_digit() || c == '.' || c == '-' || c == '+');
-    if is_scalar || raw.starts_with('\'') || raw.starts_with('"') {
-        Some(raw)
-    } else {
-        Some(format!("'{}'", raw.replace('\'', "''")))
-    }
-}
-
-#[cfg(test)]
-mod tests {
-    use super::parse_plcopen;
-    use crate::pipeline::plc::rules;
-    use std::collections::HashSet;
-
-    fn rule_ids(xml: &str) -> HashSet<&'static str> {
-        parse_plcopen(xml)
-            .iter()
-            .flat_map(rules::analyze)
-            .map(|h| h.rule_id)
-            .collect()
-    }
-
-    /// A Ladder Diagram network: a rung (power rail → contact → coil) plus an
-    /// insecure comm block. Coils/contacts translate to assignments; the block
-    /// translates to a call so the port rule fires.
-    #[test]
-    fn ld_coil_and_block_translate_and_are_analysed() {
-        let xml = r#"<?xml version="1.0"?>
-<project xmlns="http://www.plcopen.org/xml/tc6_0201">
- <types><pous>
-  <pou name="Rung" pouType="program">
-   <interface><localVars>
-     <variable name="Motor"><type><BOOL/></type></variable>
-   </localVars></interface>
-   <body><LD>
-     <leftPowerRail localId="0"/>
-     <contact localId="1"><variable>Start</variable>
-       <connectionPointIn><connection refLocalId="0"/></connectionPointIn></contact>
-     <coil localId="2"><variable>Motor</variable>
-       <connectionPointIn><connection refLocalId="1"/></connectionPointIn></coil>
-     <inVariable localId="3"><expression>21</expression></inVariable>
-     <inVariable localId="4"><expression>FALSE</expression></inVariable>
-     <block localId="10" typeName="Ftp_Send">
-       <inputVariables>
-         <variable formalParameter="PORT">
-           <connectionPointIn><connection refLocalId="3"/></connectionPointIn></variable>
-         <variable formalParameter="ENCRYPT">
-           <connectionPointIn><connection refLocalId="4"/></connectionPointIn></variable>
-       </inputVariables>
-     </block>
-   </LD></body>
-  </pou>
- </pous></types>
-</project>"#;
-        let ids = rule_ids(xml);
-        // Ftp_Send(PORT := 21, ENCRYPT := FALSE) — port 21 is an insecure protocol.
-        assert!(
-            ids.contains("plc-insecure-protocol-port"),
-            "LD block should flag port 21; got {ids:?}"
-        );
-    }
-
-    /// Doubled-text regression: a graphical expression must be extracted once,
-    /// so literals like `502` and `FALSE` stay intact (not `502502`/`FALSEFALSE`).
-    #[test]
-    fn graphical_expression_text_is_not_duplicated() {
-        let xml = r#"<?xml version="1.0"?>
-<project xmlns="http://www.plcopen.org/xml/tc6_0201">
- <types><pous>
-  <pou name="Comm" pouType="program">
-   <body><FBD>
-     <inVariable localId="1"><expression>502</expression></inVariable>
-     <inVariable localId="2"><expression>FALSE</expression></inVariable>
-     <block localId="10" typeName="Modbus_TCP_Master">
-       <inputVariables>
-         <variable formalParameter="PORT">
-           <connectionPointIn><connection refLocalId="1"/></connectionPointIn></variable>
-         <variable formalParameter="AUTH">
-           <connectionPointIn><connection refLocalId="2"/></connectionPointIn></variable>
-       </inputVariables>
-     </block>
-   </FBD></body>
-  </pou>
- </pous></types>
-</project>"#;
-        let ids = rule_ids(xml);
-        assert!(ids.contains("plc-insecure-protocol-port")); // PORT := 502 (not 502502)
-        assert!(ids.contains("plc-insecure-comm")); // AUTH := FALSE (not FALSEFALSE)
-    }
-}

compliance-agent/src/pipeline/plc/rules.rs

@@ -1,632 +0,0 @@
-//! Semantic control-logic security rules over the Structured Text AST.
-//!
-//! Each rule walks the parsed [`Pou`] and yields [`RuleHit`]s the scanner turns
-//! into findings. Rules reason over structure (declarations, assignments, calls,
-//! array accesses, division, jumps) rather than raw text, so they see through
-//! formatting and comments.
-
-use std::collections::{HashMap, HashSet};
-
-use compliance_core::models::Severity;
-
-use super::ast::*;
-
-/// One rule match within a POU.
-pub struct RuleHit {
-    pub line: u32,
-    pub severity: Severity,
-    pub rule_id: &'static str,
-    pub title: String,
-    pub description: String,
-    pub cwe: Option<&'static str>,
-    pub remediation: &'static str,
-}
-
-/// Run every rule over a POU.
-pub fn analyze(pou: &Pou) -> Vec<RuleHit> {
-    let mut hits = Vec::new();
-    let ctx = Ctx::build(pou);
-
-    // Declaration-level rules.
-    for v in &pou.vars {
-        if let Some(init) = &v.init {
-            check_credential_binding(&v.name, init, &pou.name, &mut hits);
-            check_default_password(init, &v.name, &pou.name, &mut hits);
-        }
-    }
-
-    // Body walk.
-    walk(&pou.body, pou, &ctx, &GuardSet::default(), &mut hits);
-    hits
-}
-
-/// Per-POU context precomputed once.
-struct Ctx {
-    /// Names declared in VAR_INPUT (untrusted / externally driven).
-    input_vars: HashSet<String>,
-    /// Array variable name → declared (lo, hi) bounds.
-    arrays: HashMap<String, (i64, i64)>,
-}
-
-impl Ctx {
-    fn build(pou: &Pou) -> Self {
-        let mut input_vars = HashSet::new();
-        let mut arrays = HashMap::new();
-        for v in &pou.vars {
-            if v.section == VarSection::Input {
-                input_vars.insert(v.name.to_ascii_lowercase());
-            }
-            if let Some(b) = v.array_bounds {
-                arrays.insert(v.name.to_ascii_lowercase(), b);
-            }
-        }
-        Self { input_vars, arrays }
-    }
-}
-
-/// Variables proven non-zero on the current control-flow path (from enclosing
-/// `IF`/`WHILE` conditions), so guarded divisions aren't false-flagged.
-#[derive(Default, Clone)]
-struct GuardSet {
-    nonzero: HashSet<String>,
-}
-
-impl GuardSet {
-    fn with(&self, names: Vec<String>) -> Self {
-        let mut g = self.clone();
-        g.nonzero.extend(names);
-        g
-    }
-    fn is_nonzero(&self, name: &str) -> bool {
-        self.nonzero.contains(name)
-    }
-}
-
-/// Variable names a condition proves non-zero (`v <> 0`, `v > 0`, `v >= 1`,
-/// `v < 0`, and conjunctions thereof).
-fn guards_from_cond(cond: &Expr) -> Vec<String> {
-    let mut out = Vec::new();
-    collect_nonzero(cond, &mut out);
-    out
-}
-
-fn collect_nonzero(e: &Expr, out: &mut Vec<String>) {
-    let Expr::Binary { op, lhs, rhs, .. } = e else {
-        return;
-    };
-    let is_zero = |x: &Expr| {
-        matches!(x, Expr::Int(0, _)) || matches!(x, Expr::Real(r, _) if r.abs() < f64::EPSILON)
-    };
-    let int_of = |x: &Expr| match x {
-        Expr::Int(n, _) => Some(*n),
-        _ => None,
-    };
-    match op {
-        BinOp::And => {
-            collect_nonzero(lhs, out);
-            collect_nonzero(rhs, out);
-        }
-        BinOp::Ne => {
-            if let (Some(v), true) = (lhs.as_ident(), is_zero(rhs)) {
-                out.push(v.to_ascii_lowercase());
-            }
-            if let (true, Some(v)) = (is_zero(lhs), rhs.as_ident()) {
-                out.push(v.to_ascii_lowercase());
-            }
-        }
-        BinOp::Gt | BinOp::Lt => {
-            // v > 0  or  v < 0
-            if let (Some(v), true) = (lhs.as_ident(), is_zero(rhs)) {
-                out.push(v.to_ascii_lowercase());
-            }
-        }
-        BinOp::Ge => {
-            // v >= n, n >= 1
-            if let (Some(v), Some(n)) = (lhs.as_ident(), int_of(rhs)) {
-                if n >= 1 {
-                    out.push(v.to_ascii_lowercase());
-                }
-            }
-        }
-        _ => {}
-    }
-}
-
-// ── the walker ─────────────────────────────────────────────────────
-fn walk(stmts: &[Stmt], pou: &Pou, ctx: &Ctx, guards: &GuardSet, hits: &mut Vec<RuleHit>) {
-    for s in stmts {
-        match s {
-            Stmt::Assign {
-                target,
-                value,
-                line,
-            } => {
-                check_safety_bypass(target, value, *line, &pou.name, hits);
-                // A string bound to a secret-looking target is a credential.
-                if let Some(name) = flatten_ident(target) {
-                    check_credential_binding(&name, value, &pou.name, hits);
-                    check_default_password(value, &name, &pou.name, hits);
-                }
-                walk_expr(target, pou, ctx, guards, hits);
-                walk_expr(value, pou, ctx, guards, hits);
-            }
-            Stmt::Call { callee, args, line } => {
-                check_insecure_comm(callee, args, *line, &pou.name, hits);
-                check_credentials_in_call(callee, args, *line, &pou.name, hits);
-                for a in args {
-                    walk_expr(&a.value, pou, ctx, guards, hits);
-                }
-            }
-            Stmt::Jump { label, line } => hits.push(RuleHit {
-                line: *line,
-                severity: Severity::Medium,
-                rule_id: "plc-unstructured-jump",
-                title: "Unstructured jump (JMP) in control logic".to_string(),
-                description: format!(
-                    "POU `{}` uses `JMP {label}`. Unstructured jumps make control flow hard to \
-                     verify and can bypass safety interlocks or leave outputs in an undefined \
-                     state on unexpected paths.",
-                    pou.name
-                ),
-                cwe: Some("CWE-691"),
-                remediation: "Replace JMP with structured constructs (IF/CASE/loops); reserve \
-                              jumps for well-reviewed state machines only.",
-            }),
-            Stmt::If {
-                branches,
-                else_body,
-                ..
-            } => {
-                for (cond, body) in branches {
-                    walk_expr(cond, pou, ctx, guards, hits);
-                    let child = guards.with(guards_from_cond(cond));
-                    walk(body, pou, ctx, &child, hits);
-                }
-                if let Some(b) = else_body {
-                    walk(b, pou, ctx, guards, hits);
-                }
-            }
-            Stmt::Case {
-                selector,
-                arms,
-                else_body,
-                ..
-            } => {
-                walk_expr(selector, pou, ctx, guards, hits);
-                for (labels, body) in arms {
-                    for l in labels {
-                        walk_expr(l, pou, ctx, guards, hits);
-                    }
-                    walk(body, pou, ctx, guards, hits);
-                }
-                if let Some(b) = else_body {
-                    walk(b, pou, ctx, guards, hits);
-                }
-            }
-            Stmt::For {
-                from, to, by, body, ..
-            } => {
-                walk_expr(from, pou, ctx, guards, hits);
-                walk_expr(to, pou, ctx, guards, hits);
-                if let Some(b) = by {
-                    walk_expr(b, pou, ctx, guards, hits);
-                }
-                walk(body, pou, ctx, guards, hits);
-            }
-            Stmt::While { cond, body, .. } => {
-                walk_expr(cond, pou, ctx, guards, hits);
-                let child = guards.with(guards_from_cond(cond));
-                walk(body, pou, ctx, &child, hits);
-            }
-            Stmt::Repeat { body, until, .. } => {
-                walk(body, pou, ctx, guards, hits);
-                walk_expr(until, pou, ctx, guards, hits);
-            }
-            Stmt::Return { .. } | Stmt::Exit { .. } | Stmt::Label { .. } => {}
-        }
-    }
-}
-
-fn walk_expr(e: &Expr, pou: &Pou, ctx: &Ctx, guards: &GuardSet, hits: &mut Vec<RuleHit>) {
-    match e {
-        Expr::Index { base, index, line } => {
-            check_array_bounds(base, index, *line, ctx, &pou.name, hits);
-            walk_expr(base, pou, ctx, guards, hits);
-            walk_expr(index, pou, ctx, guards, hits);
-        }
-        Expr::Binary { op, lhs, rhs, line } => {
-            if matches!(op, BinOp::Div | BinOp::Mod) {
-                check_division(rhs, *line, &pou.name, guards, hits);
-            }
-            walk_expr(lhs, pou, ctx, guards, hits);
-            walk_expr(rhs, pou, ctx, guards, hits);
-        }
-        Expr::Unary { expr, .. } => walk_expr(expr, pou, ctx, guards, hits),
-        Expr::Member { base, .. } => walk_expr(base, pou, ctx, guards, hits),
-        Expr::Call { args, .. } => {
-            for a in args {
-                walk_expr(&a.value, pou, ctx, guards, hits);
-            }
-        }
-        _ => {}
-    }
-}
-
-// ── individual rules ───────────────────────────────────────────────
-const SECRET_HINTS: &[&str] = &[
-    "password",
-    "passwd",
-    "pwd",
-    "secret",
-    "apikey",
-    "api_key",
-    "token",
-    "credential",
-    "privkey",
-    "private_key",
-    "passphrase",
-];
-
-const DEFAULT_PASSWORDS: &[&str] = &[
-    "admin",
-    "administrator",
-    "password",
-    "passwd",
-    "1234",
-    "12345",
-    "123456",
-    "0000",
-    "1111",
-    "root",
-    "default",
-    "admin123",
-    "changeme",
-    "letmein",
-    "guest",
-    "user",
-    "system",
-    "plc",
-    "codesys",
-];
-
-const COMM_FB_HINTS: &[&str] = &[
-    "modbus", "tcp", "udp", "socket", "mqtt", "opcua", "opc_ua", "ethernet", "ethip", "enip",
-    "dnp3", "ftp", "telnet", "http", "send", "connect", "sock", "comm", "profinet", "s7",
-];
-
-/// Insecure cleartext service ports.
-const INSECURE_PORTS: &[i64] = &[21, 23, 80, 502, 20000, 44818, 102];
-
-fn check_credential_binding(var_name: &str, value: &Expr, pou: &str, hits: &mut Vec<RuleHit>) {
-    let name = var_name.to_ascii_lowercase();
-    let looks_secret = SECRET_HINTS.iter().any(|h| name.contains(h));
-    if looks_secret {
-        if let Expr::Str(s, line) = value {
-            if !s.is_empty() {
-                hits.push(RuleHit {
-                    line: *line,
-                    severity: Severity::High,
-                    rule_id: "plc-hardcoded-credential",
-                    title: "Hardcoded credential in PLC program".to_string(),
-                    description: format!(
-                        "POU `{pou}` binds a hardcoded secret to `{var_name}`. Credentials \
-                         embedded in control logic are extracted trivially from a project export \
-                         or a firmware dump and cannot be rotated without a redeploy."
-                    ),
-                    cwe: Some("CWE-798"),
-                    remediation: "Store secrets outside the program (secure parameter store / \
-                                  operator-entered, retained-but-protected memory); never commit \
-                                  them to the POU.",
-                });
-            }
-        }
-    }
-}
-
-fn check_default_password(value: &Expr, var_name: &str, pou: &str, hits: &mut Vec<RuleHit>) {
-    if let Expr::Str(s, line) = value {
-        let lower = s.to_ascii_lowercase();
-        if DEFAULT_PASSWORDS.contains(&lower.as_str()) {
-            hits.push(RuleHit {
-                line: *line,
-                severity: Severity::Critical,
-                rule_id: "plc-default-password",
-                title: "Default/weak password in PLC program".to_string(),
-                description: format!(
-                    "POU `{pou}` uses the well-known default/weak password `{s}` (bound to \
-                     `{var_name}`). Default PLC credentials are the first thing an attacker tries."
-                ),
-                cwe: Some("CWE-1393"),
-                remediation:
-                    "Require a strong, unique, operator-set password; block commissioning \
-                              until the default is changed.",
-            });
-        }
-    }
-}
-
-fn check_credentials_in_call(
-    callee: &str,
-    args: &[CallArg],
-    line: u32,
-    pou: &str,
-    hits: &mut Vec<RuleHit>,
-) {
-    for a in args {
-        if let Some(name) = &a.name {
-            let n = name.to_ascii_lowercase();
-            if SECRET_HINTS.iter().any(|h| n.contains(h)) {
-                if let Expr::Str(s, l) = &a.value {
-                    if !s.is_empty() {
-                        hits.push(RuleHit {
-                            line: *l,
-                            severity: Severity::High,
-                            rule_id: "plc-hardcoded-credential",
-                            title: "Hardcoded credential passed to a function block".to_string(),
-                            description: format!(
-                                "POU `{pou}` passes a hardcoded secret as `{name}` to `{callee}`."
-                            ),
-                            cwe: Some("CWE-798"),
-                            remediation: "Supply credentials from protected configuration at \
-                                          runtime, not as a literal argument.",
-                        });
-                    }
-                }
-            }
-        }
-    }
-    let _ = line;
-}
-
-fn check_safety_bypass(target: &Expr, value: &Expr, line: u32, pou: &str, hits: &mut Vec<RuleHit>) {
-    let Some(name) = flatten_ident(target) else {
-        return;
-    };
-    let n = name.to_ascii_lowercase();
-    let safety = [
-        "safety",
-        "estop",
-        "e_stop",
-        "emergency",
-        "interlock",
-        "guard",
-        "permit",
-    ]
-    .iter()
-    .any(|h| n.contains(h));
-    let watchdog = n.contains("watchdog") || n.contains("wdt");
-    // A safety enable / interlock / watchdog signal driven to FALSE or 0 in
-    // application logic is a bypass (e.g. `Safety_Enable := FALSE`, `Watchdog_Kick := 0`).
-    let disabling = matches!(value, Expr::Bool(false, _)) || matches!(value, Expr::Int(0, _));
-    if (safety || watchdog) && disabling {
-        hits.push(RuleHit {
-            line,
-            severity: Severity::Critical,
-            rule_id: "plc-safety-bypass",
-            title: "Safety interlock / watchdog disabled in logic".to_string(),
-            description: format!(
-                "POU `{pou}` disables a safety-related signal (`{name}`) in program logic. \
-                 Bypassing interlocks or watchdogs in code defeats the plant's protective \
-                 functions and is a direct hazard."
-            ),
-            cwe: Some("CWE-1384"),
-            remediation: "Never disable safety functions from application logic; safety must be \
-                          handled by a certified safety controller / hard-wired circuit.",
-        });
-    }
-}
-
-fn check_array_bounds(
-    base: &Expr,
-    index: &Expr,
-    line: u32,
-    ctx: &Ctx,
-    pou: &str,
-    hits: &mut Vec<RuleHit>,
-) {
-    // Only reason about arrays we know the bounds of.
-    let Some(arr_name) = base.as_ident() else {
-        return;
-    };
-    if !ctx.arrays.contains_key(&arr_name.to_ascii_lowercase()) {
-        return;
-    }
-    // Index by an untrusted input variable → potential out-of-bounds access.
-    if let Some(idx_name) = index.as_ident() {
-        if ctx.input_vars.contains(&idx_name.to_ascii_lowercase()) {
-            hits.push(RuleHit {
-                line,
-                severity: Severity::High,
-                rule_id: "plc-array-unchecked-index",
-                title: "Array indexed by unvalidated input".to_string(),
-                description: format!(
-                    "POU `{pou}` indexes array `{arr_name}` with the input variable `{idx_name}` \
-                     without a validated bounds check. An out-of-range index corrupts adjacent \
-                     memory or faults the PLC (loss of control)."
-                ),
-                cwe: Some("CWE-129"),
-                remediation: "Clamp or validate the index against the array bounds (e.g. \
-                              `LIMIT`/explicit `IF idx >= lo AND idx <= hi`) before the access.",
-            });
-        }
-    }
-}
-
-fn check_division(
-    divisor: &Expr,
-    line: u32,
-    pou: &str,
-    guards: &GuardSet,
-    hits: &mut Vec<RuleHit>,
-) {
-    // A divisor proven non-zero by an enclosing guard is safe.
-    if let Expr::Ident(name, _) = divisor {
-        if guards.is_nonzero(&name.to_ascii_lowercase()) {
-            return;
-        }
-    }
-    // Flag division by a variable (could be zero); nonzero literals are fine.
-    let risky = matches!(
-        divisor,
-        Expr::Ident(_, _) | Expr::Member { .. } | Expr::Index { .. } | Expr::Int(0, _)
-    );
-    if risky {
-        hits.push(RuleHit {
-            line,
-            severity: Severity::Medium,
-            rule_id: "plc-division-by-zero",
-            title: "Division by a variable without a zero-guard".to_string(),
-            description: format!(
-                "POU `{pou}` divides by a variable that is not proven non-zero. A zero divisor \
-                 raises a PLC exception and can halt the scan cycle (denial of control)."
-            ),
-            cwe: Some("CWE-369"),
-            remediation: "Guard the divisor (`IF d <> 0 THEN …`) or use a safe-divide helper that \
-                          returns a defined value for a zero denominator.",
-        });
-    }
-}
-
-fn check_insecure_comm(
-    callee: &str,
-    args: &[CallArg],
-    line: u32,
-    pou: &str,
-    hits: &mut Vec<RuleHit>,
-) {
-    let c = callee.to_ascii_lowercase();
-    let is_comm = COMM_FB_HINTS.iter().any(|h| c.contains(h));
-    if !is_comm {
-        return;
-    }
-    // Auth/encryption explicitly disabled.
-    for a in args {
-        if let Some(name) = &a.name {
-            let n = name.to_ascii_lowercase();
-            let security_flag = ["auth", "secure", "encrypt", "tls", "ssl", "authentication"]
-                .iter()
-                .any(|h| n.contains(h));
-            if security_flag && matches!(a.value, Expr::Bool(false, _)) {
-                hits.push(RuleHit {
-                    line,
-                    severity: Severity::High,
-                    rule_id: "plc-insecure-comm",
-                    title: "Network communication with security disabled".to_string(),
-                    description: format!(
-                        "POU `{pou}` calls `{callee}` with `{name} := FALSE`, disabling \
-                         authentication/encryption on an industrial network link."
-                    ),
-                    cwe: Some("CWE-319"),
-                    remediation: "Enable authentication + transport encryption; segment OT \
-                                  networks and restrict the endpoint to trusted peers.",
-                });
-            }
-        }
-        // Well-known cleartext port literal.
-        if let Expr::Int(p, _) = &a.value {
-            if INSECURE_PORTS.contains(p) {
-                hits.push(RuleHit {
-                    line,
-                    severity: Severity::Medium,
-                    rule_id: "plc-insecure-protocol-port",
-                    title: "Cleartext industrial protocol port".to_string(),
-                    description: format!(
-                        "POU `{pou}` opens `{callee}` on port {p}, a well-known cleartext OT \
-                         protocol port with no built-in authentication or encryption."
-                    ),
-                    cwe: Some("CWE-319"),
-                    remediation: "Front the protocol with a secure gateway/VPN, or use the \
-                                  authenticated/encrypted variant; never expose it to untrusted \
-                                  networks.",
-                });
-            }
-        }
-    }
-    let _ = line;
-}
-
-/// The dotted/base identifier of an lvalue expression (`a`, `a.b` → `a.b`,
-/// `a[i]` → `a`), for name-based rules.
-fn flatten_ident(e: &Expr) -> Option<String> {
-    match e {
-        Expr::Ident(n, _) => Some(n.clone()),
-        Expr::Member { base, field, .. } => flatten_ident(base).map(|b| format!("{b}.{field}")),
-        Expr::Index { base, .. } => flatten_ident(base),
-        _ => None,
-    }
-}
-
-#[cfg(test)]
-mod tests {
-    use super::*;
-    use crate::pipeline::plc::parser;
-
-    const VULN: &str = r#"
-FUNCTION_BLOCK CommCtrl
-VAR_INPUT
-    cmdIndex : INT;
-END_VAR
-VAR
-    Password : STRING := 'admin123';
-    buffer : ARRAY[0..15] OF INT;
-    Safety_Enable : BOOL := TRUE;
-    divisor : INT;
-    result : INT;
-END_VAR
-    Safety_Enable := FALSE;
-    result := 100 / divisor;
-    buffer[cmdIndex] := 1;
-    Modbus_Connect(IP := '192.168.0.10', PORT := 502, AUTH := FALSE);
-    IF cmdIndex > 100 THEN
-        JMP fault;
-    END_IF;
-fault:
-    result := 0;
-END_FUNCTION_BLOCK
-"#;
-
-    fn rule_ids(src: &str) -> Vec<&'static str> {
-        parser::parse(src)
-            .iter()
-            .flat_map(analyze)
-            .map(|h| h.rule_id)
-            .collect()
-    }
-
-    #[test]
-    fn vulnerable_program_triggers_every_rule() {
-        let ids = rule_ids(VULN);
-        for expected in [
-            "plc-hardcoded-credential",
-            "plc-default-password",
-            "plc-safety-bypass",
-            "plc-division-by-zero",
-            "plc-array-unchecked-index",
-            "plc-insecure-comm",
-            "plc-insecure-protocol-port",
-            "plc-unstructured-jump",
-        ] {
-            assert!(
-                ids.contains(&expected),
-                "expected rule {expected}, got {ids:?}"
-            );
-        }
-    }
-
-    #[test]
-    fn clean_program_has_no_findings() {
-        let clean = r#"
-PROGRAM Clean
-VAR
-    a : INT := 5;
-    b : INT := 3;
-    total : INT;
-END_VAR
-    IF b <> 0 THEN
-        total := a / b;
-    END_IF;
-END_PROGRAM
-"#;
-        assert!(rule_ids(clean).is_empty(), "clean program should be quiet");
-    }
-}

compliance-agent/src/pipeline/plc/sbom.rs

@@ -1,253 +0,0 @@
-//! Control-application dependency SBOM from a CODESYS `.projectarchive`.
-//!
-//! A `.projectarchive` is a ZIP that bundles the project plus its referenced
-//! libraries and the target runtime. Each referenced library is an entry whose
-//! path segment follows the CODESYS convention
-//! `Name, Major.Minor.Patch.Build (Company)` (e.g. `Standard, 3.5.18.0 (System)`,
-//! `CSV Utility SL, 1.9.0.0 (CODESYS)`); the runtime appears as a device-descriptor
-//! entry `CODESYS Control … <version> …`. We enumerate those entries — no binary
-//! parsing — and emit SBOM components tagged `pkg:codesys/…`, so the CVE pipeline
-//! can match them (the runtime `Cmp*` / `3SLicense` components carry real CODESYS
-//! CVEs).
-
-use std::collections::BTreeSet;
-use std::path::{Path, PathBuf};
-
-use compliance_core::models::SbomEntry;
-
-/// Collect the control-application SBOM from every `.projectarchive` reachable for
-/// a target: the ingested artifact file itself (an uploaded archive), plus any
-/// `*.projectarchive` committed inside the working tree — e.g. a git repo or an
-/// extracted source archive that ships the archive alongside its PLCopen XML / ST
-/// exports. Deduplicated by (name, version).
-pub fn collect_sbom(artifact_file: &Path, working_path: &Path, repo_id: &str) -> Vec<SbomEntry> {
-    let mut archives: Vec<PathBuf> = Vec::new();
-    if artifact_file.is_file() {
-        archives.push(artifact_file.to_path_buf());
-    }
-    for entry in walkdir::WalkDir::new(working_path)
-        .max_depth(8)
-        .into_iter()
-        .filter_map(|e| e.ok())
-    {
-        let p = entry.path();
-        if entry.file_type().is_file()
-            && p.extension()
-                .and_then(|x| x.to_str())
-                .is_some_and(|x| x.eq_ignore_ascii_case("projectarchive"))
-        {
-            archives.push(p.to_path_buf());
-        }
-    }
-    let mut seen: BTreeSet<(String, String)> = BTreeSet::new();
-    let mut out = Vec::new();
-    for a in archives {
-        for e in projectarchive_sbom(&a, repo_id) {
-            if seen.insert((e.name.clone(), e.version.clone())) {
-                out.push(e);
-            }
-        }
-    }
-    out
-}
-
-/// Extract CODESYS library + runtime components from a `.projectarchive` (a zip).
-/// Best-effort: returns empty if the file is not a readable zip (e.g. a bare
-/// `.st`/`.xml` project, which carries no library manifest).
-pub fn projectarchive_sbom(archive: &Path, repo_id: &str) -> Vec<SbomEntry> {
-    let Ok(file) = std::fs::File::open(archive) else {
-        return Vec::new();
-    };
-    let Ok(mut zip) = zip::ZipArchive::new(file) else {
-        return Vec::new();
-    };
-    let mut seen: BTreeSet<(String, String)> = BTreeSet::new();
-    let mut entries = Vec::new();
-    for i in 0..zip.len() {
-        let Ok(entry) = zip.by_index(i) else {
-            continue;
-        };
-        // Entry paths use `\` (Windows-authored) and/or `/` separators; the
-        // component id is one path segment.
-        for seg in entry.name().split(['/', '\\']) {
-            if let Some((name, version)) = parse_library(seg).or_else(|| parse_runtime(seg)) {
-                if seen.insert((name.clone(), version.clone())) {
-                    let mut e = SbomEntry::new(
-                        repo_id.to_string(),
-                        name.clone(),
-                        version.clone(),
-                        "codesys".to_string(),
-                    );
-                    e.purl = Some(format!(
-                        "pkg:codesys/{}@{version}",
-                        name.replace(' ', "%20")
-                    ));
-                    entries.push(e);
-                }
-            }
-        }
-    }
-    entries
-}
-
-/// `Name, X.Y.Z.W (Company)` → (name, version).
-fn parse_library(seg: &str) -> Option<(String, String)> {
-    let seg = seg.trim();
-    // Company is the trailing "(…)".
-    let open = seg.rfind(" (")?;
-    let rest = &seg[open + 2..];
-    let close = rest.find(')')?;
-    if rest[..close].trim().is_empty() {
-        return None;
-    }
-    let head = seg[..open].trim(); // "Name, X.Y.Z.W"
-    let comma = head.rfind(", ")?;
-    let name = head[..comma].trim().to_string();
-    let version = head[comma + 2..].trim().to_string();
-    if name.is_empty() || !is_dotted_version(&version) {
-        return None;
-    }
-    Some((name, version))
-}
-
-/// Device-descriptor entry `CODESYS Control … X.Y.Z.W …` → (runtime name, version).
-fn parse_runtime(seg: &str) -> Option<(String, String)> {
-    let seg = seg.trim();
-    if !seg.starts_with("CODESYS Control") {
-        return None;
-    }
-    let version = seg
-        .split_whitespace()
-        .find(|t| is_dotted_version(t))?
-        .to_string();
-    // The runtime name is the first field, before the run of padding spaces that
-    // precede the descriptor's numeric columns.
-    let name = seg.split("  ").next().unwrap_or(seg).trim().to_string();
-    if name.is_empty() {
-        return None;
-    }
-    Some((name, version))
-}
-
-/// A dotted numeric version with at least 3 components (`3.5.18.0`, `4.17.0.0`).
-fn is_dotted_version(s: &str) -> bool {
-    let parts: Vec<&str> = s.split('.').collect();
-    parts.len() >= 3
-        && parts
-            .iter()
-            .all(|p| !p.is_empty() && p.chars().all(|c| c.is_ascii_digit()))
-}
-
-#[cfg(test)]
-mod tests {
-    use super::*;
-    use std::collections::HashMap;
-    use std::io::Write;
-
-    /// Build a synthetic `.projectarchive` (zip) mirroring the real CODESYS entry
-    /// naming (verified against Proemion/codesys-examples): a native `.project`,
-    /// referenced libraries as `Name, Version (Company)` segments, and a runtime
-    /// device descriptor.
-    fn synthetic_archive(dir: &Path) -> std::path::PathBuf {
-        let path = dir.join("App.projectarchive");
-        write_synthetic_archive(&path);
-        path
-    }
-
-    fn write_synthetic_archive(path: &Path) {
-        let file = std::fs::File::create(path).expect("create");
-        let mut zip = zip::ZipWriter::new(file);
-        let opts: zip::write::SimpleFileOptions = Default::default();
-        let names = [
-            "App.project",
-            r"{b0b5}\App.Device.Plc.compileinfo",
-            r"{e179}\Standard, 3.5.18.0 (System)   standard.compiled-library-v3",
-            r"{e179}\Util, 3.5.21.0 (System)   util.compiled-library-v3",
-            r"{e179}\CSV Utility SL, 1.9.0.0 (CODESYS)   csv utility sl.compiled-library-v3",
-            r"{e179}\3SLicense, 3.5.20.0 (CODESYS)   3slicense.compiled-library-v3",
-            r"{0c63}\CODESYS Control for Linux ARM SL     0000 0006     4.17.0.0     4096     .zip",
-        ];
-        for n in names {
-            zip.start_file(n, opts).expect("start");
-            zip.write_all(b"x").expect("write");
-        }
-        zip.finish().expect("finish");
-    }
-
-    #[test]
-    fn extracts_libraries_and_runtime_from_projectarchive() {
-        let tmp = std::env::temp_dir().join(format!("cs-plc-sbom-{}", uuid::Uuid::new_v4()));
-        std::fs::create_dir_all(&tmp).expect("mkdir");
-        let archive = synthetic_archive(&tmp);
-
-        let entries = projectarchive_sbom(&archive, "plc-target");
-        let by_name: HashMap<&str, &SbomEntry> =
-            entries.iter().map(|e| (e.name.as_str(), e)).collect();
-
-        // Libraries with their versions.
-        assert_eq!(
-            by_name.get("Standard").map(|e| e.version.as_str()),
-            Some("3.5.18.0")
-        );
-        assert_eq!(
-            by_name.get("Util").map(|e| e.version.as_str()),
-            Some("3.5.21.0")
-        );
-        assert_eq!(
-            by_name.get("CSV Utility SL").map(|e| e.version.as_str()),
-            Some("1.9.0.0"),
-            "multi-word library names must parse"
-        );
-        assert!(by_name.contains_key("3SLicense"));
-
-        // The runtime, from the device descriptor.
-        assert_eq!(
-            by_name
-                .get("CODESYS Control for Linux ARM SL")
-                .map(|e| e.version.as_str()),
-            Some("4.17.0.0")
-        );
-
-        // Every component is CODESYS-tagged with a purl the CVE pipeline can match,
-        // and the native `.project` / compileinfo are not mistaken for components.
-        for e in &entries {
-            assert_eq!(e.package_manager, "codesys");
-            assert!(e.purl.as_deref().unwrap_or("").starts_with("pkg:codesys/"));
-        }
-        assert!(!by_name.contains_key("App"));
-
-        let _ = std::fs::remove_dir_all(&tmp);
-    }
-
-    #[test]
-    fn collect_sbom_finds_a_projectarchive_committed_in_a_git_tree() {
-        let tmp = std::env::temp_dir().join(format!("cs-plc-collect-{}", uuid::Uuid::new_v4()));
-        let src = tmp.join("clone/src");
-        std::fs::create_dir_all(&src).expect("mkdir");
-        // Simulate a git clone that commits the archive alongside its exports.
-        write_synthetic_archive(&src.join("PumpStation.projectarchive"));
-
-        // The artifact "file" is a git URL (not a real file), so the SBOM must
-        // come from walking the cloned tree.
-        let entries = collect_sbom(Path::new("https://git.example/plc.git"), &tmp, "t");
-        let names: std::collections::HashSet<&str> =
-            entries.iter().map(|e| e.name.as_str()).collect();
-        assert!(
-            names.contains("Standard"),
-            "found libs in the committed archive"
-        );
-        assert!(names.contains("CODESYS Control for Linux ARM SL"));
-
-        let _ = std::fs::remove_dir_all(&tmp);
-    }
-
-    #[test]
-    fn non_zip_file_yields_no_sbom() {
-        let tmp = std::env::temp_dir().join(format!("cs-plc-sbom-st-{}", uuid::Uuid::new_v4()));
-        std::fs::create_dir_all(&tmp).expect("mkdir");
-        let st = tmp.join("prog.st");
-        std::fs::write(&st, "PROGRAM P\nVAR x : INT; END_VAR\nEND_PROGRAM\n").expect("write");
-        assert!(projectarchive_sbom(&st, "t").is_empty());
-        let _ = std::fs::remove_dir_all(&tmp);
-    }
-}

compliance-agent/src/pipeline/pr_review.rs

@@ -1,4 +1,3 @@
-use crate::pipeline::repo_view::RepoView;
 use compliance_core::models::*;
 
 use super::dedup::compute_fingerprint;
@@ -15,7 +14,7 @@ impl PipelineOrchestrator {
     #[tracing::instrument(skip_all, fields(repo_id = %repo_id, pr_number))]
     pub async fn run_pr_review(
         &self,
-        repo: &RepoView,
+        repo: &TrackedRepository,
         repo_id: &str,
         pr_number: u64,
         base_sha: &str,

compliance-agent/src/pipeline/repo_view.rs

@@ -1,74 +0,0 @@
-//! `RepoView` — an internal, non-persisted view of a code target for the scan
-//! pipeline.
-//!
-//! It replaces the old persisted `TrackedRepository` model. The pipeline
-//! (SAST → SBOM → CVE → triage → issues → DAST, and PR review) only ever needs a
-//! flat bundle of git + issue-tracker + auth fields; those are projected from an
-//! [`OnboardedTarget`] and its code [`Artifact`] by [`RepoView::from_target`].
-//! Nothing here is written to Mongo — onboarded targets are the sole persisted
-//! entity.
-
-use compliance_core::models::{Artifact, OnboardedTarget, TrackerType};
-
-/// A flat, pipeline-facing view of a code target. Built from an onboarded
-/// target; never persisted.
-#[derive(Debug, Clone)]
-pub struct RepoView {
-    /// The onboarded target's id (used as `repo_id` across findings/sbom/etc.).
-    pub id: Option<mongodb::bson::oid::ObjectId>,
-    pub name: String,
-    pub git_url: String,
-    pub default_branch: String,
-    pub local_path: Option<String>,
-    pub scan_schedule: Option<String>,
-    pub webhook_enabled: bool,
-    pub webhook_secret: Option<String>,
-    pub tracker_type: Option<TrackerType>,
-    pub tracker_owner: Option<String>,
-    pub tracker_repo: Option<String>,
-    pub tracker_token: Option<String>,
-    pub auth_token: Option<String>,
-    pub auth_username: Option<String>,
-    pub last_scanned_commit: Option<String>,
-    pub findings_count: u32,
-}
-
-impl RepoView {
-    /// Project an onboarded target + its code artifact into a pipeline view.
-    pub fn from_target(target: &OnboardedTarget, code: &Artifact) -> Self {
-        let mut view = Self {
-            id: target.id,
-            name: target.name.clone(),
-            git_url: code.source_ref.clone(),
-            default_branch: "main".to_string(),
-            local_path: None,
-            scan_schedule: target.scan_schedule.clone(),
-            webhook_enabled: target.webhook_enabled,
-            webhook_secret: target.webhook_secret.clone(),
-            tracker_type: None,
-            tracker_owner: None,
-            tracker_repo: None,
-            tracker_token: None,
-            auth_token: None,
-            auth_username: None,
-            last_scanned_commit: None,
-            findings_count: target.findings_count,
-        };
-        if let Some(git) = &code.git {
-            view.default_branch = git.default_branch.clone();
-            view.last_scanned_commit = git.last_scanned_commit.clone();
-            view.local_path = git.local_path.clone();
-        }
-        if let Some(auth) = &code.auth {
-            view.auth_token = auth.secret.clone();
-            view.auth_username = auth.username.clone();
-        }
-        if let Some(it) = &target.scan_config.issue_tracker {
-            view.tracker_type = it.tracker_type.clone();
-            view.tracker_owner = it.owner.clone();
-            view.tracker_repo = it.repo.clone();
-            view.tracker_token = it.token.clone();
-        }
-        view
-    }
-}

compliance-agent/src/scheduler.rs

@@ -288,25 +288,25 @@ async fn scan_all_repos(agent: &ComplianceAgent, tenant_id: &str) {
         None => return,
     };
 
-    let cursor = match db.onboarded_targets().find(doc! {}).await {
+    let cursor = match db.repositories().find(doc! {}).await {
         Ok(c) => c,
         Err(e) => {
-            tracing::error!("Failed to list targets for tenant '{tenant_id}': {e}");
+            tracing::error!("Failed to list repos for tenant '{tenant_id}': {e}");
             return;
         }
     };
 
-    let targets: Vec<_> = cursor.filter_map(|r| async { r.ok() }).collect().await;
+    let repos: Vec<_> = cursor.filter_map(|r| async { r.ok() }).collect().await;
 
-    for target in targets {
-        let target_id = target.id.map(|id| id.to_hex()).unwrap_or_default();
+    for repo in repos {
+        let repo_id = repo.id.map(|id| id.to_hex()).unwrap_or_default();
         if let Err(e) = agent
-            .run_target_scan(tenant_id, &target_id, ScanTrigger::Scheduled)
+            .run_scan(tenant_id, &repo_id, ScanTrigger::Scheduled)
             .await
         {
             tracing::error!(
                 "Scheduled scan failed for {} (tenant '{tenant_id}'): {e}",
-                target.name
+                repo.name
             );
         }
     }
@@ -348,7 +348,7 @@ async fn monitor_cves(agent: &ComplianceAgent, tenant_id: &str) {
         std::collections::HashMap::new();
     for rid in &repo_ids {
         if let Ok(oid) = mongodb::bson::oid::ObjectId::parse_str(rid) {
-            if let Ok(Some(repo)) = db.onboarded_targets().find_one(doc! { "_id": oid }).await {
+            if let Ok(Some(repo)) = db.repositories().find_one(doc! { "_id": oid }).await {
                 repo_names.insert(rid.clone(), repo.name.clone());
             }
         }

compliance-agent/src/webhooks/gitea.rs

@@ -31,7 +31,7 @@ pub async fn handle_gitea_webhook(
         }
     };
     let repo = match db
-        .onboarded_targets()
+        .repositories()
         .find_one(mongodb::bson::doc! { "_id": oid })
         .await
     {

compliance-agent/src/webhooks/github.rs

@@ -31,7 +31,7 @@ pub async fn handle_github_webhook(
         }
     };
     let repo = match db
-        .onboarded_targets()
+        .repositories()
         .find_one(mongodb::bson::doc! { "_id": oid })
         .await
     {

compliance-agent/src/webhooks/gitlab.rs

@@ -27,7 +27,7 @@ pub async fn handle_gitlab_webhook(
         }
     };
     let repo = match db
-        .onboarded_targets()
+        .repositories()
         .find_one(mongodb::bson::doc! { "_id": oid })
         .await
     {

compliance-agent/src/werkbank/mod.rs

@@ -1,10 +0,0 @@
-//! Werkbank control-plane: the dynamic-execution job queue.
-//!
-//! The control plane enqueues declarative [`Job`](compliance_core::models::werkbank::Job)s
-//! and Werkbank runners lease, run, and complete them. [`queue::JobQueue`] is the
-//! Mongo-backed queue behind that flow (WB-02); the runner-facing HTTP transport
-//! and the runner itself land in later stories.
-
-pub mod queue;
-
-pub use queue::{JobQueue, SweepOutcome};

compliance-agent/src/werkbank/queue.rs

@@ -1,309 +0,0 @@
-//! The Mongo-backed Werkbank job queue (WB-02).
-//!
-//! A pull queue: the control plane [`enqueue`](JobQueue::enqueue)s jobs; a runner
-//! [`lease`](JobQueue::lease)s the oldest queued job it can run (matched by
-//! executor + labels), [`heartbeat`](JobQueue::heartbeat)s while it works, and
-//! [`complete`](JobQueue::complete)s it. Leases carry a visibility timeout: if a
-//! runner dies mid-job its heartbeats stop, the lease expires, and
-//! [`sweep_expired`](JobQueue::sweep_expired) returns the job to `queued` (or
-//! `expired` once it has been retried too many times).
-//!
-//! All state transitions are single atomic Mongo updates guarded by the lease
-//! token, so two runners can never both own a job. Every operation takes an
-//! explicit `now` so the queue's time-dependent behaviour is deterministically
-//! testable.
-
-use std::time::Duration;
-
-use chrono::{DateTime, Utc};
-use mongodb::bson::{doc, Bson, DateTime as BsonDateTime};
-use mongodb::error::{ErrorKind, WriteFailure};
-use mongodb::options::ReturnDocument;
-use mongodb::Collection;
-
-use compliance_core::models::werkbank::{
-    Executor, HeartbeatAck, Job, JobRecord, JobResult, JobStatus, LeasedJob,
-};
-
-use crate::database::Database;
-use crate::error::AgentError;
-
-/// The non-terminal states a job can be swept or cancelled from.
-const ACTIVE_STATES: [&str; 2] = ["leased", "running"];
-/// Every terminal state (no further transitions).
-const TERMINAL_STATES: [&str; 4] = ["succeeded", "failed", "expired", "cancelled"];
-
-/// What a visibility-timeout sweep did.
-#[derive(Debug, Clone, Copy, Default, PartialEq, Eq)]
-pub struct SweepOutcome {
-    /// Expired-lease jobs returned to `queued` for another runner.
-    pub requeued: u64,
-    /// Jobs that had exhausted their attempts and were marked `expired`.
-    pub expired: u64,
-}
-
-/// The Mongo-backed job queue.
-pub struct JobQueue {
-    coll: Collection<JobRecord>,
-}
-
-impl JobQueue {
-    /// Build a queue over a tenant database's `werkbank_jobs` collection.
-    pub fn new(db: &Database) -> Self {
-        Self {
-            coll: db.werkbank_jobs(),
-        }
-    }
-
-    /// Enqueue a job. Idempotent by job id: a job that is already present is a
-    /// no-op. Returns `true` if this call inserted it, `false` if it existed.
-    pub async fn enqueue(&self, job: Job, now: DateTime<Utc>) -> Result<bool, AgentError> {
-        let record = JobRecord::queued(job, now);
-        match self.coll.insert_one(&record).await {
-            Ok(_) => Ok(true),
-            Err(e) if is_duplicate_key(&e) => Ok(false),
-            Err(e) => Err(e.into()),
-        }
-    }
-
-    /// Atomically lease the oldest `queued` job this runner can run — matched by
-    /// executor and by labels (every label the job requires must be one the
-    /// runner advertises). Returns the job plus a lease token, or `None` if
-    /// nothing is runnable.
-    pub async fn lease(
-        &self,
-        runner_id: &str,
-        executor: Executor,
-        runner_labels: &[String],
-        lease_ttl: Duration,
-        now: DateTime<Utc>,
-    ) -> Result<Option<LeasedJob>, AgentError> {
-        let token = uuid::Uuid::new_v4().to_string();
-        let expires = bson_dt(now + ttl(lease_ttl));
-        let executor_bson = mongodb::bson::to_bson(&executor).unwrap_or(Bson::Null);
-
-        let filter = doc! {
-            "status": "queued",
-            "cancel_requested": { "$ne": true },
-            "job.executor": executor_bson,
-            // Every label the job requires must be in the runner's set — i.e. the
-            // job has no label that is not offered by the runner. Absent/empty
-            // job labels match any runner.
-            "job.labels": { "$not": { "$elemMatch": { "$nin": runner_labels.to_vec() } } },
-        };
-        let update = doc! {
-            "$set": {
-                "status": "leased",
-                "lease_token": &token,
-                "leased_by": runner_id,
-                "lease_expires_at": expires,
-                "heartbeat_at": bson_dt(now),
-                "updated_at": bson_dt(now),
-            },
-            "$inc": { "attempts": 1 },
-        };
-
-        let record = self
-            .coll
-            .find_one_and_update(filter, update)
-            .sort(doc! { "created_at": 1 }) // FIFO
-            .return_document(ReturnDocument::After)
-            .await?;
-        Ok(record.map(|r| LeasedJob {
-            job: r.job,
-            lease_token: token,
-        }))
-    }
-
-    /// Extend a lease and report whether the job has been asked to cancel.
-    /// Transitions the job to `running` on the first heartbeat. Returns `None`
-    /// when the lease is no longer valid (token mismatch, or the job is already
-    /// terminal) — the runner should then abandon the work.
-    pub async fn heartbeat(
-        &self,
-        job_id: &str,
-        lease_token: &str,
-        lease_ttl: Duration,
-        now: DateTime<Utc>,
-    ) -> Result<Option<HeartbeatAck>, AgentError> {
-        let filter = doc! {
-            "job.id": job_id,
-            "lease_token": lease_token,
-            "status": { "$in": ACTIVE_STATES.to_vec() },
-        };
-        let update = doc! {
-            "$set": {
-                "status": "running",
-                "lease_expires_at": bson_dt(now + ttl(lease_ttl)),
-                "heartbeat_at": bson_dt(now),
-                "updated_at": bson_dt(now),
-            },
-        };
-        let record = self
-            .coll
-            .find_one_and_update(filter, update)
-            .return_document(ReturnDocument::After)
-            .await?;
-        Ok(record.map(|r| HeartbeatAck {
-            cancelled: r.cancel_requested,
-        }))
-    }
-
-    /// Record a job's terminal result. Guarded by the lease token and only from
-    /// an active (`leased`/`running`) state, so it is idempotent — a duplicate or
-    /// late submission after the job already finished matches nothing. Returns
-    /// `true` if this call recorded the result.
-    pub async fn complete(
-        &self,
-        job_id: &str,
-        lease_token: &str,
-        result: &JobResult,
-        now: DateTime<Utc>,
-    ) -> Result<bool, AgentError> {
-        let status = result.status.unwrap_or(JobStatus::Failed);
-        let status_bson = mongodb::bson::to_bson(&status).unwrap_or(Bson::String("failed".into()));
-        let result_bson =
-            mongodb::bson::to_bson(result).map_err(|e| AgentError::Other(e.to_string()))?;
-
-        let filter = doc! {
-            "job.id": job_id,
-            "lease_token": lease_token,
-            "status": { "$in": ACTIVE_STATES.to_vec() },
-        };
-        let update = doc! {
-            "$set": {
-                "status": status_bson,
-                "result": result_bson,
-                "lease_token": Bson::Null,
-                "lease_expires_at": Bson::Null,
-                "updated_at": bson_dt(now),
-            },
-        };
-        let res = self.coll.update_one(filter, update).await?;
-        Ok(res.modified_count == 1)
-    }
-
-    /// Request cancellation of a job. A still-`queued` job is cancelled outright;
-    /// an in-flight one is flagged so the runner sees it on its next heartbeat and
-    /// tears down. Returns `true` if a non-terminal job matched.
-    pub async fn cancel(&self, job_id: &str, now: DateTime<Utc>) -> Result<bool, AgentError> {
-        let filter = doc! {
-            "job.id": job_id,
-            "status": { "$nin": TERMINAL_STATES.to_vec() },
-        };
-        // Pipeline update: flag cancellation, and if still queued flip straight to
-        // cancelled (nothing is running it).
-        let pipeline = vec![doc! {
-            "$set": {
-                "cancel_requested": true,
-                "status": {
-                    "$cond": [ { "$eq": ["$status", "queued"] }, "cancelled", "$status" ]
-                },
-                "updated_at": bson_dt(now),
-            }
-        }];
-        let res = self.coll.update_one(filter, pipeline).await?;
-        Ok(res.matched_count == 1)
-    }
-
-    /// Sweep leases whose visibility timeout has elapsed: return them to `queued`
-    /// for another runner, or mark them `expired` once they have been leased
-    /// `max_attempts` times. This is what makes a crashed runner's job recover.
-    pub async fn sweep_expired(
-        &self,
-        now: DateTime<Utc>,
-        max_attempts: u32,
-        // (kept explicit rather than a const so callers can tune retry policy)
-    ) -> Result<SweepOutcome, AgentError> {
-        let now_bson = bson_dt(now);
-        let max = i64::from(max_attempts);
-
-        let requeue = self
-            .coll
-            .update_many(
-                doc! {
-                    "status": { "$in": ACTIVE_STATES.to_vec() },
-                    "lease_expires_at": { "$lt": &now_bson },
-                    "attempts": { "$lt": max },
-                },
-                doc! { "$set": {
-                    "status": "queued",
-                    "lease_token": Bson::Null,
-                    "leased_by": Bson::Null,
-                    "lease_expires_at": Bson::Null,
-                    "updated_at": &now_bson,
-                } },
-            )
-            .await?;
-
-        let expire = self
-            .coll
-            .update_many(
-                doc! {
-                    "status": { "$in": ACTIVE_STATES.to_vec() },
-                    "lease_expires_at": { "$lt": &now_bson },
-                    "attempts": { "$gte": max },
-                },
-                doc! { "$set": {
-                    "status": "expired",
-                    "lease_token": Bson::Null,
-                    "lease_expires_at": Bson::Null,
-                    "updated_at": &now_bson,
-                } },
-            )
-            .await?;
-
-        Ok(SweepOutcome {
-            requeued: requeue.modified_count,
-            expired: expire.modified_count,
-        })
-    }
-
-    /// Fetch a job record by job id (inspection / control-plane reads).
-    pub async fn get(&self, job_id: &str) -> Result<Option<JobRecord>, AgentError> {
-        Ok(self.coll.find_one(doc! { "job.id": job_id }).await?)
-    }
-}
-
-/// A `chrono::Duration` for a lease TTL, saturating rather than panicking on an
-/// absurd input (`chrono::Duration::seconds` panics past its internal bound).
-fn ttl(d: Duration) -> chrono::Duration {
-    let secs = i64::try_from(d.as_secs()).unwrap_or(i64::MAX);
-    chrono::Duration::try_seconds(secs).unwrap_or(chrono::Duration::MAX)
-}
-
-/// A chrono instant as a BSON date (so Mongo stores/compares it as a real date).
-fn bson_dt(dt: DateTime<Utc>) -> BsonDateTime {
-    BsonDateTime::from_chrono(dt)
-}
-
-/// Whether a Mongo error is a duplicate-key (E11000) violation — a job with this
-/// id is already enqueued.
-fn is_duplicate_key(e: &mongodb::error::Error) -> bool {
-    match &*e.kind {
-        ErrorKind::Write(WriteFailure::WriteError(we)) => we.code == 11000,
-        _ => false,
-    }
-}
-
-#[cfg(test)]
-mod tests {
-    use super::*;
-
-    #[test]
-    fn ttl_saturates_and_converts() {
-        assert_eq!(ttl(Duration::from_secs(30)), chrono::Duration::seconds(30));
-        // An absurd TTL saturates instead of panicking.
-        assert_eq!(ttl(Duration::from_secs(u64::MAX)), chrono::Duration::MAX);
-    }
-
-    #[test]
-    fn state_constants_are_disjoint() {
-        for s in ACTIVE_STATES {
-            assert!(
-                !TERMINAL_STATES.contains(&s),
-                "{s} cannot be both active and terminal"
-            );
-        }
-    }
-}

compliance-agent/tests/common/mod.rs

@@ -2,10 +2,6 @@
 //
 // Spins up the agent API server on a random port with an isolated test
 // database. Each test gets a fresh database that is dropped on cleanup.
-//
-// Included via `mod common;` in several test binaries; not every binary uses
-// every helper, so allow dead code here.
-#![allow(dead_code)]
 
 use std::sync::Arc;
 
@@ -15,54 +11,6 @@ use compliance_agent::database::DatabasePool;
 use compliance_core::AgentConfig;
 use secrecy::SecretString;
 
-/// The runner bearer token wired into the test config.
-pub const TEST_RUNNER_TOKEN: &str = "test-runner-token";
-
-/// A minimal dev [`AgentConfig`] for tests: unauthenticated (no Keycloak), the
-/// Werkbank runner API enabled with [`TEST_RUNNER_TOKEN`].
-pub fn dev_config(mongodb_uri: String, db_name: String) -> AgentConfig {
-    AgentConfig {
-        mongodb_uri,
-        mongodb_database: db_name,
-        litellm_url: std::env::var("TEST_LITELLM_URL")
-            .unwrap_or_else(|_| "http://localhost:4000".into()),
-        litellm_api_key: SecretString::from(String::new()),
-        litellm_model: "gpt-4o".into(),
-        litellm_embed_model: "text-embedding-3-small".into(),
-        agent_port: 0, // not used — we bind ourselves
-        scan_schedule: String::new(),
-        cve_monitor_schedule: String::new(),
-        git_clone_base_path: "/tmp/compliance-scanner-tests/repos".into(),
-        artifact_store_base_path: "/tmp/compliance-scanner-tests/artifacts".into(),
-        ssh_key_path: "/tmp/compliance-scanner-tests/ssh/id_ed25519".into(),
-        github_token: None,
-        github_webhook_secret: None,
-        gitlab_url: None,
-        gitlab_token: None,
-        gitlab_webhook_secret: None,
-        jira_url: None,
-        jira_email: None,
-        jira_api_token: None,
-        jira_project_key: None,
-        searxng_url: None,
-        nvd_api_key: None,
-        keycloak_url: None,
-        keycloak_realm: None,
-        keycloak_admin_username: None,
-        keycloak_admin_password: None,
-        pentest_verification_email: None,
-        pentest_imap_host: None,
-        pentest_imap_port: None,
-        pentest_imap_tls: false,
-        pentest_imap_username: None,
-        pentest_imap_password: None,
-        admin_api_token: None,
-        tenant_registry_url: None,
-        plc_runtime: compliance_core::PlcRuntimeConfig::default(),
-        werkbank_runner_token: Some(SecretString::from(TEST_RUNNER_TOKEN.to_string())),
-    }
-}
-
 /// A running test server with a unique database.
 pub struct TestServer {
     pub base_url: String,
@@ -85,7 +33,45 @@ impl TestServer {
             .await
             .expect("Failed to build DatabasePool");
 
-        let config = dev_config(mongodb_uri.clone(), db_name.clone());
+        let config = AgentConfig {
+            mongodb_uri: mongodb_uri.clone(),
+            mongodb_database: db_name.clone(),
+            litellm_url: std::env::var("TEST_LITELLM_URL")
+                .unwrap_or_else(|_| "http://localhost:4000".into()),
+            litellm_api_key: SecretString::from(String::new()),
+            litellm_model: "gpt-4o".into(),
+            litellm_embed_model: "text-embedding-3-small".into(),
+            agent_port: 0, // not used — we bind ourselves
+            scan_schedule: String::new(),
+            cve_monitor_schedule: String::new(),
+            git_clone_base_path: "/tmp/compliance-scanner-tests/repos".into(),
+            artifact_store_base_path: "/tmp/compliance-scanner-tests/artifacts".into(),
+            ssh_key_path: "/tmp/compliance-scanner-tests/ssh/id_ed25519".into(),
+            github_token: None,
+            github_webhook_secret: None,
+            gitlab_url: None,
+            gitlab_token: None,
+            gitlab_webhook_secret: None,
+            jira_url: None,
+            jira_email: None,
+            jira_api_token: None,
+            jira_project_key: None,
+            searxng_url: None,
+            nvd_api_key: None,
+            keycloak_url: None,
+            keycloak_realm: None,
+            keycloak_admin_username: None,
+            keycloak_admin_password: None,
+            pentest_verification_email: None,
+            pentest_imap_host: None,
+            pentest_imap_port: None,
+            pentest_imap_tls: false,
+            pentest_imap_username: None,
+            pentest_imap_password: None,
+            admin_api_token: None,
+            tenant_registry_url: None,
+            unified_pipeline: false,
+        };
 
         let agent = ComplianceAgent::new(config, db_pool);
 

compliance-agent/tests/integration/api/cascade_delete.rs

@@ -113,16 +113,15 @@ async fn delete_repo_cascades_to_dast_and_pentest_data() {
     // Create a repo
     let resp = server
         .post(
-            "/api/v1/targets",
+            "/api/v1/repositories",
             &json!({
                 "name": "cascade-test",
-                "target_type": "web_app",
-                "artifacts": [{ "kind": "git_repo", "source_ref": "https://github.com/example/cascade-test.git", "branch": "main" }],
+                "git_url": "https://github.com/example/cascade-test.git",
             }),
         )
         .await;
     let body: serde_json::Value = resp.json().await.unwrap();
-    let repo_id = body["data"]["_id"]["$oid"].as_str().unwrap().to_string();
+    let repo_id = body["data"]["id"].as_str().unwrap().to_string();
 
     // Insert DAST target linked to repo
     let target_id = insert_dast_target(&server, &repo_id, "cascade-target").await;
@@ -141,7 +140,9 @@ async fn delete_repo_cascades_to_dast_and_pentest_data() {
     assert_eq!(count_docs(&server, "dast_findings").await, 1);
 
     // Delete the repo
-    let resp = server.delete(&format!("/api/v1/targets/{repo_id}")).await;
+    let resp = server
+        .delete(&format!("/api/v1/repositories/{repo_id}"))
+        .await;
     assert_eq!(resp.status(), 200);
 
     // All downstream data should be gone
@@ -160,16 +161,15 @@ async fn delete_repo_cascades_sast_findings_and_sbom() {
     // Create a repo
     let resp = server
         .post(
-            "/api/v1/targets",
+            "/api/v1/repositories",
             &json!({
                 "name": "sast-cascade",
-                "target_type": "web_app",
-                "artifacts": [{ "kind": "git_repo", "source_ref": "https://github.com/example/sast-cascade.git", "branch": "main" }],
+                "git_url": "https://github.com/example/sast-cascade.git",
             }),
         )
         .await;
     let body: serde_json::Value = resp.json().await.unwrap();
-    let repo_id = body["data"]["_id"]["$oid"].as_str().unwrap().to_string();
+    let repo_id = body["data"]["id"].as_str().unwrap().to_string();
 
     // Insert SAST finding and SBOM entry
     let mongodb_uri = std::env::var("TEST_MONGODB_URI")
@@ -209,7 +209,9 @@ async fn delete_repo_cascades_sast_findings_and_sbom() {
     assert_eq!(count_docs(&server, "sbom_entries").await, 1);
 
     // Delete repo
-    server.delete(&format!("/api/v1/targets/{repo_id}")).await;
+    server
+        .delete(&format!("/api/v1/repositories/{repo_id}"))
+        .await;
 
     // Both should be gone
     assert_eq!(count_docs(&server, "findings").await, 0);

compliance-agent/tests/integration/api/mod.rs

@@ -3,4 +3,5 @@ mod dast;
 mod findings;
 mod health;
 mod onboarding;
+mod repositories;
 mod stats;

compliance-agent/tests/integration/api/repositories.rs

@@ -0,0 +1,110 @@
+use crate::common::TestServer;
+use serde_json::json;
+
+#[tokio::test]
+async fn add_and_list_repository() {
+    let server = TestServer::start().await;
+
+    // Initially empty
+    let resp = server.get("/api/v1/repositories").await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 0);
+
+    // Add a repository
+    let resp = server
+        .post(
+            "/api/v1/repositories",
+            &json!({
+                "name": "test-repo",
+                "git_url": "https://github.com/example/test-repo.git",
+            }),
+        )
+        .await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let repo_id = body["data"]["id"].as_str().unwrap().to_string();
+    assert!(!repo_id.is_empty());
+
+    // List should now return 1
+    let resp = server.get("/api/v1/repositories").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let repos = body["data"].as_array().unwrap();
+    assert_eq!(repos.len(), 1);
+    assert_eq!(repos[0]["name"], "test-repo");
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn add_duplicate_repository_fails() {
+    let server = TestServer::start().await;
+
+    let payload = json!({
+        "name": "dup-repo",
+        "git_url": "https://github.com/example/dup-repo.git",
+    });
+
+    // First add succeeds
+    let resp = server.post("/api/v1/repositories", &payload).await;
+    assert_eq!(resp.status(), 200);
+
+    // Second add with same git_url should fail (unique index)
+    let resp = server.post("/api/v1/repositories", &payload).await;
+    assert_ne!(resp.status(), 200);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn delete_repository() {
+    let server = TestServer::start().await;
+
+    // Add a repo
+    let resp = server
+        .post(
+            "/api/v1/repositories",
+            &json!({
+                "name": "to-delete",
+                "git_url": "https://github.com/example/to-delete.git",
+            }),
+        )
+        .await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let repo_id = body["data"]["id"].as_str().unwrap();
+
+    // Delete it
+    let resp = server
+        .delete(&format!("/api/v1/repositories/{repo_id}"))
+        .await;
+    assert_eq!(resp.status(), 200);
+
+    // List should be empty again
+    let resp = server.get("/api/v1/repositories").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 0);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn delete_nonexistent_repository_returns_404() {
+    let server = TestServer::start().await;
+
+    let resp = server
+        .delete("/api/v1/repositories/000000000000000000000000")
+        .await;
+    assert_eq!(resp.status(), 404);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn delete_invalid_id_returns_400() {
+    let server = TestServer::start().await;
+
+    let resp = server.delete("/api/v1/repositories/not-a-valid-id").await;
+    assert_eq!(resp.status(), 400);
+
+    server.cleanup().await;
+}

compliance-agent/tests/integration/api/stats.rs

@@ -5,14 +5,13 @@ use serde_json::json;
 async fn stats_overview_reflects_inserted_data() {
     let server = TestServer::start().await;
 
-    // Add a target
+    // Add a repo
     server
         .post(
-            "/api/v1/targets",
+            "/api/v1/repositories",
             &json!({
                 "name": "stats-repo",
-                "target_type": "web_app",
-                "artifacts": [{ "kind": "git_repo", "source_ref": "https://github.com/example/stats-repo.git", "branch": "main" }],
+                "git_url": "https://github.com/example/stats-repo.git",
             }),
         )
         .await;

compliance-agent/tests/integration/migration.rs

@@ -0,0 +1,156 @@
+// Integration tests for the onboarding backfill migration.
+//
+// Requires MongoDB (set TEST_MONGODB_URI if not at the default).
+// Not run in CI (which is `--lib` only) — run locally:
+//   cargo test -p compliance-agent --test e2e migration
+
+use compliance_agent::database::{Database, DatabasePool};
+use compliance_agent::migrate::onboarding;
+use compliance_core::models::{
+    ArtifactKind, DastTarget, DastTargetType, TargetType, TrackedRepository,
+};
+use mongodb::bson::{doc, Document};
+
+async fn fresh_db() -> (DatabasePool, String, Database) {
+    let uri = std::env::var("TEST_MONGODB_URI")
+        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
+    // Prefix must fit the pool's 30-char cap (`<prefix>_<32 hex>` <= 63).
+    let prefix = format!("t_{}", &uuid::Uuid::new_v4().simple().to_string()[..16]);
+    let pool = DatabasePool::connect(&uri, &prefix)
+        .await
+        .expect("connect mongo");
+    let db = pool.for_tenant_id("t1").await.expect("tenant db");
+    (pool, prefix, db)
+}
+
+async fn cleanup(pool: &DatabasePool, prefix: &str) {
+    if let Ok(names) = pool.client().list_database_names().await {
+        for n in names {
+            if n.starts_with(prefix) {
+                pool.client().database(&n).drop().await.ok();
+            }
+        }
+    }
+}
+
+#[tokio::test]
+async fn backfill_folds_relinks_is_idempotent_and_reversible() {
+    let (pool, prefix, db) = fresh_db().await;
+
+    // Seed a repo.
+    let repo = TrackedRepository::new("acme".into(), "https://git/acme.git".into());
+    let repo_id = db
+        .repositories()
+        .insert_one(repo)
+        .await
+        .expect("insert repo")
+        .inserted_id
+        .as_object_id()
+        .expect("repo oid");
+
+    // A DAST target linked to the repo (folds + promotes to WebApp + relinks).
+    let mut linked = DastTarget::new(
+        "acme-web".into(),
+        "https://acme.example.com".into(),
+        DastTargetType::WebApp,
+    );
+    linked.repo_id = Some(repo_id.to_hex());
+    let linked_id = db
+        .dast_targets()
+        .insert_one(linked)
+        .await
+        .expect("insert linked dast")
+        .inserted_id
+        .as_object_id()
+        .expect("linked oid");
+
+    // A repo-less DAST target (standalone).
+    let standalone = DastTarget::new(
+        "acme-api".into(),
+        "https://api.acme.com".into(),
+        DastTargetType::RestApi,
+    );
+    let standalone_id = db
+        .dast_targets()
+        .insert_one(standalone)
+        .await
+        .expect("insert standalone dast")
+        .inserted_id
+        .as_object_id()
+        .expect("standalone oid");
+
+    // A DAST scan run pointing at the linked target — should be relinked to the repo.
+    db.collection_named::<Document>("dast_scan_runs")
+        .insert_one(doc! { "target_id": linked_id.to_hex(), "status": "completed" })
+        .await
+        .expect("insert dast run");
+
+    // --- Backfill ---
+    assert!(!onboarding::already_applied(&db).await.unwrap());
+    let report = onboarding::backfill_onboarded_targets(&db, false)
+        .await
+        .expect("backfill");
+    assert_eq!(report.repos_migrated, 1);
+    assert_eq!(report.dast_targets_folded, 1);
+    assert_eq!(report.dast_targets_standalone, 1);
+    assert!(onboarding::already_applied(&db).await.unwrap());
+
+    // Repo target: preserved _id, has git + folded live-url, promoted to WebApp.
+    let repo_target = db
+        .onboarded_targets()
+        .find_one(doc! { "_id": repo_id })
+        .await
+        .unwrap()
+        .expect("repo target");
+    assert!(repo_target.has(ArtifactKind::GitRepo));
+    assert!(repo_target.has(ArtifactKind::LiveUrl));
+    assert_eq!(repo_target.target_type, TargetType::WebApp);
+
+    // Standalone target: preserved _id, live-url, backend service.
+    let standalone_target = db
+        .onboarded_targets()
+        .find_one(doc! { "_id": standalone_id })
+        .await
+        .unwrap()
+        .expect("standalone target");
+    assert!(standalone_target.has(ArtifactKind::LiveUrl));
+    assert_eq!(standalone_target.target_type, TargetType::BackendService);
+
+    // The DAST run was relinked from the old dast id to the repo (unified) id.
+    let run = db
+        .collection_named::<Document>("dast_scan_runs")
+        .find_one(doc! {})
+        .await
+        .unwrap()
+        .expect("run");
+    assert_eq!(run.get_str("target_id").unwrap(), repo_id.to_hex());
+
+    // --- Idempotent: re-run migrates nothing new ---
+    let again = onboarding::backfill_onboarded_targets(&db, false)
+        .await
+        .expect("backfill again");
+    assert_eq!(again.repos_migrated, 0);
+    assert_eq!(again.dast_targets_folded, 0);
+    assert_eq!(again.dast_targets_standalone, 0);
+    assert!(again.skipped_existing >= 2);
+
+    // --- Revert: onboarded targets gone, relink undone, marker cleared ---
+    onboarding::revert(&db).await.expect("revert");
+    assert_eq!(
+        db.onboarded_targets()
+            .count_documents(doc! {})
+            .await
+            .unwrap(),
+        0
+    );
+    let run_after = db
+        .collection_named::<Document>("dast_scan_runs")
+        .find_one(doc! {})
+        .await
+        .unwrap()
+        .expect("run");
+    assert_eq!(run_after.get_str("target_id").unwrap(), linked_id.to_hex());
+    assert!(!onboarding::already_applied(&db).await.unwrap());
+
+    cleanup(&pool, &prefix).await;
+}

compliance-agent/tests/integration/mod.rs

@@ -7,3 +7,4 @@
 // Or nightly: (via CI with MongoDB service container)
 
 mod api;
+mod migration;

compliance-agent/tests/tenant_isolation.rs

@@ -11,7 +11,7 @@
 #![allow(clippy::expect_used, clippy::unwrap_used)]
 
 use compliance_agent::database::DatabasePool;
-use compliance_core::models::{Artifact, OnboardedTarget, TargetType};
+use compliance_core::models::TrackedRepository;
 use compliance_core::{OrgRole, TenantContext, TenantStatus};
 use mongodb::bson::doc;
 
@@ -28,12 +28,27 @@ fn ctx(tenant_id: &str, slug: &str) -> TenantContext {
     }
 }
 
-fn fixture_repo(name: &str, git_url: &str) -> OnboardedTarget {
-    let mut target = OnboardedTarget::new(name.to_string(), TargetType::WebApp);
-    target
-        .artifacts
-        .push(Artifact::git_repo(git_url.to_string(), "main".to_string()));
-    target
+fn fixture_repo(name: &str, git_url: &str) -> TrackedRepository {
+    TrackedRepository {
+        id: None,
+        name: name.to_string(),
+        git_url: git_url.to_string(),
+        default_branch: "main".to_string(),
+        local_path: None,
+        scan_schedule: None,
+        webhook_enabled: false,
+        webhook_secret: None,
+        tracker_type: None,
+        tracker_owner: None,
+        tracker_repo: None,
+        tracker_token: None,
+        auth_token: None,
+        auth_username: None,
+        last_scanned_commit: None,
+        findings_count: 0,
+        created_at: chrono::Utc::now(),
+        updated_at: chrono::Utc::now(),
+    }
 }
 
 #[tokio::test]
@@ -56,12 +71,12 @@ async fn pool_isolates_tenants_at_driver_level() {
 
     // Write distinct repos into each tenant's database.
     acme_db
-        .onboarded_targets()
+        .repositories()
         .insert_one(fixture_repo("acme-app", "git@example.com:acme/app.git"))
         .await
         .expect("insert acme");
     globex_db
-        .onboarded_targets()
+        .repositories()
         .insert_one(fixture_repo(
             "globex-platform",
             "git@example.com:globex/platform.git",
@@ -158,12 +173,12 @@ async fn admin_helpers_list_and_drop_tenant_dbs() {
     let acme_db = pool.for_tenant(&acme).await.expect("acme db");
     let globex_db = pool.for_tenant(&globex).await.expect("globex db");
     acme_db
-        .onboarded_targets()
+        .repositories()
         .insert_one(fixture_repo("acme-app", "git@example.com:acme/app.git"))
         .await
         .expect("insert acme");
     globex_db
-        .onboarded_targets()
+        .repositories()
         .insert_one(fixture_repo("globex-app", "git@example.com:globex/app.git"))
         .await
         .expect("insert globex");
@@ -269,9 +284,9 @@ fn short_id() -> String {
 }
 
 /// Drain a `repositories` find cursor on the given tenant database.
-async fn collect(db: &compliance_agent::database::Database) -> Vec<OnboardedTarget> {
+async fn collect(db: &compliance_agent::database::Database) -> Vec<TrackedRepository> {
     let mut cursor = db
-        .onboarded_targets()
+        .repositories()
         .find(doc! {})
         .await
         .expect("find repositories");

compliance-agent/tests/werkbank_api.rs

@@ -1,291 +0,0 @@
-//! Integration tests for the Werkbank runner endpoints (WB-05).
-//!
-//! Drives the real HTTP handlers (lease/heartbeat/complete) against a live Mongo:
-//! a runner leases a seeded job, completes it, and the result's findings are
-//! persisted against the job's target. Also checks the bearer-token gate. Skips
-//! cleanly when no Mongo is reachable.
-
-#![allow(clippy::expect_used, clippy::unwrap_used)]
-
-mod common;
-
-use std::sync::Arc;
-
-use axum::routing::{get, post};
-use axum::{middleware, Extension, Router};
-
-use compliance_agent::agent::ComplianceAgent;
-use compliance_agent::api::handlers::werkbank_jobs;
-use compliance_agent::database::DatabasePool;
-use compliance_agent::werkbank::JobQueue;
-use compliance_core::models::werkbank::{InputRef, Job, JobResult, JobStatus, LeasedJob};
-use compliance_core::models::{
-    Artifact, Finding, OnboardedTarget, PlcFormat, ScanType, Severity, TargetType,
-};
-
-use common::{dev_config, TEST_RUNNER_TOKEN};
-
-const TENANT: &str = "dev";
-
-/// A running werkbank API on a random port, or `None` if no Mongo.
-struct Harness {
-    base_url: String,
-    client: reqwest::Client,
-    pool: DatabasePool,
-    db_name: String,
-}
-
-async fn start() -> Option<Harness> {
-    let uri = std::env::var("TEST_MONGODB_URI")
-        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
-    let db_name = format!("wba_{}", &uuid::Uuid::new_v4().simple().to_string()[..12]);
-    let pool = match DatabasePool::connect(&uri, &db_name).await {
-        Ok(p) => p,
-        Err(_) => {
-            eprintln!("SKIP werkbank_api: no MongoDB reachable at {uri}");
-            return None;
-        }
-    };
-    // Touch the tenant DB so indexes are ensured before the queue is used.
-    pool.for_tenant_id(TENANT).await.expect("tenant db");
-
-    let agent = ComplianceAgent::new(dev_config(uri, db_name.clone()), pool.clone());
-    let app = Router::new()
-        .route("/api/v1/werkbank/jobs/lease", post(werkbank_jobs::lease))
-        .route(
-            "/api/v1/werkbank/jobs/heartbeat",
-            post(werkbank_jobs::heartbeat),
-        )
-        .route(
-            "/api/v1/werkbank/jobs/complete",
-            post(werkbank_jobs::complete),
-        )
-        .route(
-            "/api/v1/werkbank/jobs/enqueue",
-            post(werkbank_jobs::enqueue),
-        )
-        .route(
-            "/api/v1/werkbank/artifacts/{hash}",
-            get(werkbank_jobs::serve_artifact),
-        )
-        .layer(middleware::from_fn(werkbank_jobs::require_runner_token))
-        .layer(Extension(Arc::new(agent)));
-
-    let listener = tokio::net::TcpListener::bind("127.0.0.1:0").await.unwrap();
-    let port = listener.local_addr().unwrap().port();
-    tokio::spawn(async move {
-        axum::serve(listener, app).await.ok();
-    });
-
-    Some(Harness {
-        base_url: format!("http://127.0.0.1:{port}"),
-        client: reqwest::Client::new(),
-        pool,
-        db_name,
-    })
-}
-
-impl Harness {
-    fn post(
-        &self,
-        path: &str,
-        token: Option<&str>,
-        body: serde_json::Value,
-    ) -> reqwest::RequestBuilder {
-        let mut r = self
-            .client
-            .post(format!("{}{path}", self.base_url))
-            .json(&body);
-        if let Some(t) = token {
-            r = r.bearer_auth(t);
-        }
-        r
-    }
-    async fn cleanup(&self) {
-        let _ = self
-            .pool
-            .client()
-            .database(&format!("{}_{TENANT}", self.db_name))
-            .drop()
-            .await;
-    }
-}
-
-fn finding_for(target: &str, fp: &str) -> Finding {
-    let mut f = Finding::new(
-        target.to_string(),
-        fp.to_string(),
-        "ics-probe".to_string(),
-        ScanType::IcsProbe,
-        "Modbus exposed".to_string(),
-        "unauthenticated".to_string(),
-        Severity::Critical,
-    );
-    f.rule_id = Some("ics-modbus-exposed".to_string());
-    f
-}
-
-#[tokio::test]
-async fn lease_complete_persists_findings_against_the_target() {
-    let Some(h) = start().await else { return };
-    let db = h.pool.for_tenant_id(TENANT).await.unwrap();
-    let queue = JobQueue::new(&db);
-
-    // Seed a queued job.
-    let job = Job::plc_provision("job-1", TENANT, "target-1", InputRef::blob("sha256:x"), 180);
-    assert!(queue.enqueue(job, chrono::Utc::now()).await.unwrap());
-
-    // Lease it over HTTP.
-    let resp = h
-        .post(
-            "/api/v1/werkbank/jobs/lease",
-            Some(TEST_RUNNER_TOKEN),
-            serde_json::json!({
-                "tenant": TENANT, "runner_id": "r1", "executor": "docker",
-                "labels": [], "lease_ttl_secs": 60
-            }),
-        )
-        .send()
-        .await
-        .unwrap();
-    assert_eq!(resp.status(), 200, "lease should return a job");
-    let leased: LeasedJob = resp.json().await.unwrap();
-    assert_eq!(leased.job.id, "job-1");
-
-    // Complete it with a finding.
-    let mut result = JobResult::succeeded("job-1");
-    result.findings = vec![finding_for("target-1", "fp-abc")];
-    let resp = h
-        .post(
-            "/api/v1/werkbank/jobs/complete",
-            Some(TEST_RUNNER_TOKEN),
-            serde_json::json!({
-                "tenant": TENANT, "job_id": "job-1",
-                "lease_token": leased.lease_token, "result": result
-            }),
-        )
-        .send()
-        .await
-        .unwrap();
-    assert_eq!(resp.status(), 200);
-    assert!(resp.json::<serde_json::Value>().await.unwrap()["recorded"]
-        .as_bool()
-        .unwrap());
-
-    // The job is now succeeded, and the finding was persisted to the target.
-    assert_eq!(
-        queue.get("job-1").await.unwrap().unwrap().status,
-        JobStatus::Succeeded
-    );
-    let stored = db
-        .findings()
-        .find_one(mongodb::bson::doc! { "fingerprint": "fp-abc" })
-        .await
-        .unwrap();
-    assert!(stored.is_some(), "finding should be persisted");
-
-    h.cleanup().await;
-}
-
-#[tokio::test]
-async fn enqueue_extracts_program_stores_a_blob_and_serves_it() {
-    let Some(h) = start().await else { return };
-    let db = h.pool.for_tenant_id(TENANT).await.unwrap();
-
-    // A PlcSps target with a single complete ST program uploaded.
-    let dir = std::env::temp_dir().join(format!("wbq-prog-{}", uuid::Uuid::new_v4()));
-    std::fs::create_dir_all(&dir).unwrap();
-    let st = dir.join("main.st");
-    std::fs::write(
-        &st,
-        "PROGRAM Main\nEND_PROGRAM\nCONFIGURATION C\n  RESOURCE R\nEND_CONFIGURATION\n",
-    )
-    .unwrap();
-    let mut target = OnboardedTarget::new("plc".into(), TargetType::PlcSps);
-    let mut art = Artifact::plc_project("main.st", PlcFormat::StructuredText);
-    art.stored_path = Some(st.to_string_lossy().to_string());
-    target.artifacts.push(art);
-    let ins = db.onboarded_targets().insert_one(&target).await.unwrap();
-    let target_id = ins.inserted_id.as_object_id().unwrap().to_hex();
-
-    // Enqueue → a plc-provision job whose program is a content-addressed blob.
-    let resp = h
-        .post(
-            "/api/v1/werkbank/jobs/enqueue",
-            Some(TEST_RUNNER_TOKEN),
-            serde_json::json!({ "tenant": TENANT, "target_id": target_id }),
-        )
-        .send()
-        .await
-        .unwrap();
-    assert_eq!(resp.status(), 200, "enqueue should succeed");
-    let body: serde_json::Value = resp.json().await.unwrap();
-    let job_id = body["job_id"].as_str().unwrap().to_string();
-
-    let rec = JobQueue::new(&db).get(&job_id).await.unwrap().unwrap();
-    let hash = rec
-        .job
-        .inputs
-        .get("program")
-        .and_then(|i| i.blob.clone())
-        .expect("program blob");
-
-    // Serve the blob back and confirm it's the program source (what the runner
-    // would fetch).
-    let served = h
-        .client
-        .get(format!("{}/api/v1/werkbank/artifacts/{hash}", h.base_url))
-        .bearer_auth(TEST_RUNNER_TOKEN)
-        .send()
-        .await
-        .unwrap();
-    assert_eq!(served.status(), 200);
-    assert!(served.text().await.unwrap().contains("CONFIGURATION"));
-
-    h.cleanup().await;
-    let _ = std::fs::remove_dir_all(&dir);
-}
-
-#[tokio::test]
-async fn empty_queue_leases_nothing() {
-    let Some(h) = start().await else { return };
-    let resp = h
-        .post(
-            "/api/v1/werkbank/jobs/lease",
-            Some(TEST_RUNNER_TOKEN),
-            serde_json::json!({
-                "tenant": TENANT, "runner_id": "r1", "executor": "docker",
-                "labels": [], "lease_ttl_secs": 60
-            }),
-        )
-        .send()
-        .await
-        .unwrap();
-    assert_eq!(resp.status(), 204, "no job → 204");
-    h.cleanup().await;
-}
-
-#[tokio::test]
-async fn runner_endpoints_require_the_bearer_token() {
-    let Some(h) = start().await else { return };
-    let body = serde_json::json!({
-        "tenant": TENANT, "runner_id": "r1", "executor": "docker",
-        "labels": [], "lease_ttl_secs": 60
-    });
-
-    let no_token = h
-        .post("/api/v1/werkbank/jobs/lease", None, body.clone())
-        .send()
-        .await
-        .unwrap();
-    assert_eq!(no_token.status(), 401, "missing token → 401");
-
-    let bad_token = h
-        .post("/api/v1/werkbank/jobs/lease", Some("wrong"), body)
-        .send()
-        .await
-        .unwrap();
-    assert_eq!(bad_token.status(), 401, "wrong token → 401");
-
-    h.cleanup().await;
-}

compliance-agent/tests/werkbank_queue.rs

@@ -1,258 +0,0 @@
-//! Integration tests for the Werkbank job queue (WB-02).
-//!
-//! Exercises the atomic lease/heartbeat/complete/sweep flow against a real
-//! MongoDB — the guarantees (idempotent enqueue, single-owner lease, visibility
-//! timeout) are Mongo-semantics-dependent and can't be unit-tested in isolation.
-//! Skips cleanly when no Mongo is reachable (set `TEST_MONGODB_URI` to point at
-//! one; defaults to the local dev cluster).
-
-#![allow(clippy::expect_used, clippy::unwrap_used)]
-
-use std::time::Duration;
-
-use chrono::{DateTime, TimeZone, Utc};
-
-use compliance_agent::database::Database;
-use compliance_agent::werkbank::JobQueue;
-use compliance_core::models::werkbank::{Executor, InputRef, Job, JobResult};
-
-/// Connect + ensure indexes on a throwaway database, or `None` if no Mongo.
-async fn setup() -> Option<(JobQueue, mongodb::Database)> {
-    let uri = std::env::var("TEST_MONGODB_URI")
-        .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
-    let db_name = format!("wbq_{}", &uuid::Uuid::new_v4().simple().to_string()[..12]);
-    let db = match Database::connect(&uri, &db_name).await {
-        Ok(d) => d,
-        Err(_) => {
-            eprintln!("SKIP werkbank_queue: no MongoDB reachable at {uri}");
-            return None;
-        }
-    };
-    db.ensure_indexes().await.expect("ensure indexes");
-    let queue = JobQueue::new(&db);
-    Some((queue, db.inner().clone()))
-}
-
-fn base_time() -> DateTime<Utc> {
-    Utc.timestamp_opt(1_700_000_000, 0).unwrap()
-}
-
-fn job(id: &str) -> Job {
-    Job::plc_provision(id, "acme", "target-1", InputRef::blob("sha256:abc"), 180)
-}
-
-fn job_with_labels(id: &str, labels: &[&str]) -> Job {
-    let mut j = job(id);
-    j.labels = labels.iter().map(|s| s.to_string()).collect();
-    j
-}
-
-macro_rules! skip_if_no_mongo {
-    () => {
-        match setup().await {
-            Some(v) => v,
-            None => return,
-        }
-    };
-}
-
-#[tokio::test]
-async fn enqueue_is_idempotent() {
-    let (q, db) = skip_if_no_mongo!();
-    let now = base_time();
-
-    assert!(q.enqueue(job("j1"), now).await.expect("enqueue"));
-    // Same id again — no duplicate row, reports "already present".
-    assert!(!q.enqueue(job("j1"), now).await.expect("enqueue2"));
-
-    let rec = q.get("j1").await.expect("get").expect("exists");
-    assert_eq!(
-        rec.status,
-        compliance_core::models::werkbank::JobStatus::Queued
-    );
-    assert_eq!(rec.attempts, 0);
-
-    db.drop().await.ok();
-}
-
-#[tokio::test]
-async fn lease_matches_executor_and_labels_and_is_fifo() {
-    let (q, db) = skip_if_no_mongo!();
-    let t0 = base_time();
-
-    // Two docker jobs (j_old older than j_new) + one requiring a kvm label.
-    q.enqueue(job("j_old"), t0).await.unwrap();
-    q.enqueue(job("j_new"), t0 + chrono::Duration::seconds(5))
-        .await
-        .unwrap();
-    q.enqueue(job_with_labels("j_kvm", &["kvm=true"]), t0)
-        .await
-        .unwrap();
-
-    // Wrong executor: a shell runner leases nothing.
-    assert!(q
-        .lease("r-shell", Executor::Shell, &[], Duration::from_secs(30), t0)
-        .await
-        .unwrap()
-        .is_none());
-
-    // A docker runner without the kvm label gets the oldest label-free job (FIFO).
-    let leased = q
-        .lease("r1", Executor::Docker, &[], Duration::from_secs(30), t0)
-        .await
-        .unwrap()
-        .expect("leased");
-    assert_eq!(leased.job.id, "j_old", "oldest matching job first");
-    assert!(!leased.lease_token.is_empty());
-
-    // The kvm job stays unleased for that runner (missing label)...
-    let none = q
-        .lease("r1", Executor::Docker, &[], Duration::from_secs(30), t0)
-        .await
-        .unwrap()
-        .expect("next");
-    assert_eq!(none.job.id, "j_new", "label-free job, not the kvm one");
-
-    // ...but a runner advertising kvm can take it.
-    let kvm = q
-        .lease(
-            "r2",
-            Executor::Docker,
-            &["kvm=true".to_string(), "arch=amd64".to_string()],
-            Duration::from_secs(30),
-            t0,
-        )
-        .await
-        .unwrap()
-        .expect("kvm leased");
-    assert_eq!(kvm.job.id, "j_kvm");
-
-    // A leased job increments attempts and is no longer queued.
-    let rec = q.get("j_old").await.unwrap().unwrap();
-    assert_eq!(rec.attempts, 1);
-    assert_eq!(rec.leased_by.as_deref(), Some("r1"));
-
-    db.drop().await.ok();
-}
-
-#[tokio::test]
-async fn heartbeat_extends_lease_and_surfaces_cancel() {
-    let (q, db) = skip_if_no_mongo!();
-    let now = base_time();
-
-    q.enqueue(job("j1"), now).await.unwrap();
-    let leased = q
-        .lease("r1", Executor::Docker, &[], Duration::from_secs(30), now)
-        .await
-        .unwrap()
-        .unwrap();
-
-    // A valid heartbeat moves it to running and reports not-cancelled.
-    let ack = q
-        .heartbeat("j1", &leased.lease_token, Duration::from_secs(30), now)
-        .await
-        .unwrap()
-        .expect("valid lease");
-    assert!(!ack.cancelled);
-    assert_eq!(
-        q.get("j1").await.unwrap().unwrap().status,
-        compliance_core::models::werkbank::JobStatus::Running
-    );
-
-    // A wrong token is a lost lease.
-    assert!(q
-        .heartbeat("j1", "wrong-token", Duration::from_secs(30), now)
-        .await
-        .unwrap()
-        .is_none());
-
-    // Cancelling an in-flight job flags it; the next heartbeat reports cancelled.
-    assert!(q.cancel("j1", now).await.unwrap());
-    let ack = q
-        .heartbeat("j1", &leased.lease_token, Duration::from_secs(30), now)
-        .await
-        .unwrap()
-        .expect("still leased");
-    assert!(ack.cancelled);
-
-    db.drop().await.ok();
-}
-
-#[tokio::test]
-async fn complete_is_idempotent_and_token_guarded() {
-    let (q, db) = skip_if_no_mongo!();
-    let now = base_time();
-
-    q.enqueue(job("j1"), now).await.unwrap();
-    let leased = q
-        .lease("r1", Executor::Docker, &[], Duration::from_secs(30), now)
-        .await
-        .unwrap()
-        .unwrap();
-
-    // Wrong token cannot complete.
-    let mut result = JobResult::succeeded("j1");
-    result.findings = Vec::new();
-    assert!(!q.complete("j1", "nope", &result, now).await.unwrap());
-
-    // The lease holder completes it once...
-    assert!(q
-        .complete("j1", &leased.lease_token, &result, now)
-        .await
-        .unwrap());
-    let rec = q.get("j1").await.unwrap().unwrap();
-    assert_eq!(
-        rec.status,
-        compliance_core::models::werkbank::JobStatus::Succeeded
-    );
-    assert!(rec.result.is_some());
-    assert!(rec.lease_token.is_none(), "lease cleared on completion");
-
-    // ...and a second (duplicate) completion is a no-op.
-    assert!(!q
-        .complete("j1", &leased.lease_token, &result, now)
-        .await
-        .unwrap());
-
-    db.drop().await.ok();
-}
-
-#[tokio::test]
-async fn sweep_requeues_expired_then_expires_after_max_attempts() {
-    let (q, db) = skip_if_no_mongo!();
-    let t0 = base_time();
-
-    q.enqueue(job("j1"), t0).await.unwrap();
-
-    // Lease #1 with a 10s TTL; then time jumps past expiry.
-    q.lease("r1", Executor::Docker, &[], Duration::from_secs(10), t0)
-        .await
-        .unwrap()
-        .unwrap();
-    let past = t0 + chrono::Duration::seconds(60);
-
-    // attempts=1 < max=2 → requeued.
-    let swept = q.sweep_expired(past, 2).await.unwrap();
-    assert_eq!(swept.requeued, 1);
-    assert_eq!(swept.expired, 0);
-    assert_eq!(
-        q.get("j1").await.unwrap().unwrap().status,
-        compliance_core::models::werkbank::JobStatus::Queued
-    );
-
-    // Lease #2 (attempts=2), let it expire again → now expired (>= max).
-    q.lease("r2", Executor::Docker, &[], Duration::from_secs(10), past)
-        .await
-        .unwrap()
-        .unwrap();
-    let later = past + chrono::Duration::seconds(60);
-    let swept = q.sweep_expired(later, 2).await.unwrap();
-    assert_eq!(swept.requeued, 0);
-    assert_eq!(swept.expired, 1);
-    assert_eq!(
-        q.get("j1").await.unwrap().unwrap().status,
-        compliance_core::models::werkbank::JobStatus::Expired
-    );
-
-    db.drop().await.ok();
-}

compliance-core/Cargo.toml

@@ -50,7 +50,3 @@ axum = { version = "0.8", optional = true }
 jsonwebtoken = { version = "9", optional = true }
 reqwest = { workspace = true, optional = true }
 tokio = { workspace = true, optional = true }
-
-[dev-dependencies]
-# Parse the declarative TOML job specs in the Werkbank contract tests.
-toml = "0.8"

compliance-core/src/auth.rs

@@ -64,11 +64,11 @@ struct Claims {
 const PUBLIC_ENDPOINTS: &[&str] = &["/api/v1/health"];
 
 /// Path prefixes that bypass JWT validation. The admin sub-router
-/// (`/api/v1/admin/*`) and the Werkbank runner API (`/api/v1/werkbank/*`)
-/// have their own static-bearer middleware and must not be routed through the
-/// customer-JWT path — a Keycloak token always carries a single tenant_id and
-/// would semantically conflict with these cross-tenant / machine operations.
-const PUBLIC_PREFIXES: &[&str] = &["/api/v1/admin/", "/api/v1/werkbank/"];
+/// (`/api/v1/admin/*`) has its own static-bearer middleware and must
+/// not be routed through the customer-JWT path — a Keycloak token
+/// always carries a single tenant_id and would semantically conflict
+/// with cross-tenant admin operations.
+const PUBLIC_PREFIXES: &[&str] = &["/api/v1/admin/"];
 
 /// Middleware that validates Bearer JWT tokens against Keycloak's JWKS
 /// and attaches a `TenantContext` extension on success.

compliance-core/src/config.rs

@@ -49,62 +49,10 @@ pub struct AgentConfig {
     /// of tenants to iterate. When `None` or unreachable, scheduler
     /// falls back to `SCHEDULER_TENANT_IDS` env (M7.2-C).
     pub tenant_registry_url: Option<String>,
-    /// Ephemeral soft-PLC provisioning for dynamic PLC testing (#183). Off by
-    /// default: it needs Docker access in the agent's runtime, which is a
-    /// deployment opt-in.
-    pub plc_runtime: PlcRuntimeConfig,
-    /// Static bearer for the Werkbank runner endpoints
-    /// (`/api/v1/werkbank/jobs/*`). Machine auth for runners leasing/completing
-    /// jobs — NOT a Keycloak JWT, since a runner acts across tenants. When
-    /// `None`, those endpoints are not mounted at all.
-    pub werkbank_runner_token: Option<SecretString>,
-}
-
-/// Configuration for the ephemeral soft-PLC "provision-and-test" path (#183).
-///
-/// When a PLC/SPS target ships control logic but no reachable live device, the
-/// agent can instantiate that logic itself: spin up a throwaway soft-PLC
-/// (OpenPLC) container in-cluster, load the program, start the runtime, probe it
-/// over industrial protocols, then tear it down. This struct carries the knobs
-/// for that container's lifecycle and the OpenPLC web-UI credentials used to
-/// upload the program.
-#[derive(Clone, Debug)]
-pub struct PlcRuntimeConfig {
-    /// Master switch. Provision-and-test does nothing unless this is set — it
-    /// shells out to `docker`, which requires the agent container to have Docker
-    /// access (socket mount), an explicit deployment decision.
-    pub enabled: bool,
-    /// Container image for the ephemeral soft-PLC (OpenPLC).
-    pub image: String,
-    /// Docker network the instance joins. Must be the agent's own network so it
-    /// is reachable in-cluster by container name and never published to the host.
-    pub network: String,
-    /// Memory cap passed to `docker run --memory` (e.g. `512m`).
-    pub memory: String,
-    /// CPU cap passed to `docker run --cpus` (e.g. `0.5`).
-    pub cpus: String,
-    /// Hard ceiling on a provisioned instance's lifetime. Teardown is guaranteed
-    /// no later than this even if a load/probe step hangs.
-    pub max_lifetime_secs: u64,
-    /// OpenPLC web-UI username for the program upload (image default `openplc`).
-    pub openplc_user: String,
-    /// OpenPLC web-UI password (image default `openplc`).
-    pub openplc_password: SecretString,
-}
-
-impl Default for PlcRuntimeConfig {
-    fn default() -> Self {
-        Self {
-            enabled: false,
-            image: "registry.meghsakha.com/openplc:latest".to_string(),
-            network: "certifai".to_string(),
-            memory: "512m".to_string(),
-            cpus: "0.5".to_string(),
-            max_lifetime_secs: 180,
-            openplc_user: "openplc".to_string(),
-            openplc_password: SecretString::from("openplc".to_string()),
-        }
-    }
+    /// When true, `run_scan` dispatches to the unified `run_target` pipeline
+    /// (reads `onboarded_targets`) instead of the legacy repository pipeline.
+    /// Env `UNIFIED_PIPELINE`. Defaults off during the transition.
+    pub unified_pipeline: bool,
 }
 
 #[derive(Clone, Debug, Serialize, Deserialize)]

compliance-core/src/lib.rs

@@ -13,6 +13,6 @@ pub mod auth;
 #[cfg(feature = "axum")]
 pub mod tenant_ctx;
 
-pub use config::{AgentConfig, DashboardConfig, PlcRuntimeConfig};
+pub use config::{AgentConfig, DashboardConfig};
 pub use error::CoreError;
 pub use tenant::{OrgRole, TenantContext, TenantStatus};

compliance-core/src/models/mod.rs

@@ -10,13 +10,11 @@ pub mod mcp;
 pub mod mcp_token;
 pub mod notification;
 pub mod onboarding;
-pub mod oscal;
 pub mod pentest;
 pub mod repository;
 pub mod sbom;
 pub mod scan;
 pub(crate) mod serde_helpers;
-pub mod werkbank;
 
 pub use auth::AuthInfo;
 pub use chat::{ChatMessage, ChatRequest, ChatResponse, SourceReference};
@@ -40,18 +38,12 @@ pub use onboarding::{
     GitArtifactConfig, IssueTrackerConfig, OnboardedTarget, PlcArtifactConfig, PlcFormat,
     TargetScanConfig, TargetType, TargetTypeCandidate, WebArtifactConfig,
 };
-pub use oscal::OscalDocument;
 pub use pentest::{
     AttackChainNode, AttackNodeStatus, AuthMode, CodeContextHint, Environment, IdentityProvider,
     PentestAuthConfig, PentestConfig, PentestEvent, PentestMessage, PentestSession, PentestStats,
     PentestStatus, PentestStrategy, SeverityDistribution, TestUserRecord, TesterInfo,
     ToolCallRecord,
 };
-pub use repository::ScanTrigger;
+pub use repository::{ScanTrigger, TrackedRepository};
 pub use sbom::{SbomEntry, VulnRef};
 pub use scan::{ScanPhase, ScanRun, ScanRunStatus, ScanType};
-pub use werkbank::{
-    CompleteRequest, CompleteResponse, DastCollect, Executor, HeartbeatAck, HeartbeatRequest,
-    InputRef, Job, JobCollect, JobRecord, JobResult, JobRuntime, JobStatus, JobType, LeaseRequest,
-    LeasedJob,
-};

compliance-core/src/models/onboarding.rs

@@ -202,9 +202,6 @@ pub enum PlcFormat {
     PlcopenXml,
     /// IEC 61131-3 Structured Text source.
     StructuredText,
-    /// A CODESYS project archive (`.projectarchive` — a zip bundling the project
-    /// plus its referenced libraries and runtime; the source of the control-app SBOM).
-    ProjectArchive,
 }
 
 /// PLC-specific configuration for a [`ArtifactKind::PlcProject`] artifact.

compliance-core/src/models/oscal.rs

@@ -1,250 +0,0 @@
-//! OSCAL 1.1 catalog types + mapping into the controls corpus.
-//!
-//! Deserialises the OSCAL catalog served by breakpilot-compliance
-//! (`GET /api/compliance/v1/oscal/catalog`) and maps its controls into the
-//! framework-agnostic [`crate::traits::Control`] that the mapping engine consumes.
-//! Only the fields we use are modelled; unknown OSCAL fields are ignored so the
-//! producer can add detail without breaking us.
-//!
-//! Scope boundary: this is the *catalog* (domain content). Assessment objectives
-//! and scanner routing live in our assessment layer, not here — see
-//! [`crate::traits::ControlsProvider`].
-
-use serde::Deserialize;
-
-use crate::models::onboarding::ComplianceFramework;
-use crate::traits::Control as CorpusControl;
-
-/// A parsed OSCAL catalog document (`{"catalog": {...}}`).
-#[derive(Debug, Clone, Deserialize)]
-pub struct OscalDocument {
-    pub catalog: Catalog,
-}
-
-/// An OSCAL catalog: metadata + a tree of control groups.
-#[derive(Debug, Clone, Deserialize)]
-pub struct Catalog {
-    pub uuid: String,
-    pub metadata: Metadata,
-    #[serde(default)]
-    pub groups: Vec<Group>,
-    #[serde(rename = "back-matter", default)]
-    pub back_matter: Option<BackMatter>,
-}
-
-/// Catalog metadata (title/version + provenance props).
-#[derive(Debug, Clone, Deserialize)]
-pub struct Metadata {
-    pub title: String,
-    pub version: String,
-    #[serde(rename = "oscal-version")]
-    pub oscal_version: String,
-    #[serde(default)]
-    pub props: Vec<Prop>,
-}
-
-/// A name/value property, optionally namespaced.
-#[derive(Debug, Clone, Deserialize)]
-pub struct Prop {
-    pub name: String,
-    pub value: String,
-    #[serde(default)]
-    pub ns: Option<String>,
-}
-
-/// A control group (may nest sub-groups and controls).
-#[derive(Debug, Clone, Deserialize)]
-pub struct Group {
-    #[serde(default)]
-    pub id: String,
-    #[serde(default)]
-    pub title: String,
-    #[serde(default)]
-    pub controls: Vec<Control>,
-    #[serde(default)]
-    pub groups: Vec<Group>,
-}
-
-/// An OSCAL control (may nest enhancement controls).
-#[derive(Debug, Clone, Deserialize)]
-pub struct Control {
-    pub id: String,
-    #[serde(default)]
-    pub title: String,
-    #[serde(default)]
-    pub props: Vec<Prop>,
-    #[serde(default)]
-    pub parts: Vec<Part>,
-    #[serde(default)]
-    pub links: Vec<Link>,
-    #[serde(default)]
-    pub controls: Vec<Control>,
-}
-
-/// A control part (e.g. the `statement`), may nest sub-parts.
-#[derive(Debug, Clone, Deserialize)]
-pub struct Part {
-    #[serde(default)]
-    pub name: String,
-    #[serde(default)]
-    pub prose: Option<String>,
-    #[serde(default)]
-    pub parts: Vec<Part>,
-}
-
-/// A link, e.g. a `reference` to a back-matter resource.
-#[derive(Debug, Clone, Deserialize)]
-pub struct Link {
-    pub href: String,
-    #[serde(default)]
-    pub rel: Option<String>,
-}
-
-/// Back-matter holding referenced resources (e.g. the CRA measures).
-#[derive(Debug, Clone, Deserialize)]
-pub struct BackMatter {
-    #[serde(default)]
-    pub resources: Vec<Resource>,
-}
-
-/// A back-matter resource referenced by control links.
-#[derive(Debug, Clone, Deserialize)]
-pub struct Resource {
-    pub uuid: String,
-    #[serde(default)]
-    pub title: Option<String>,
-    #[serde(default)]
-    pub description: Option<String>,
-}
-
-impl Metadata {
-    /// First prop value with the given name.
-    pub fn prop(&self, name: &str) -> Option<&str> {
-        self.props
-            .iter()
-            .find(|p| p.name == name)
-            .map(|p| p.value.as_str())
-    }
-}
-
-impl Control {
-    /// First prop value with the given name.
-    pub fn prop(&self, name: &str) -> Option<&str> {
-        self.props
-            .iter()
-            .find(|p| p.name == name)
-            .map(|p| p.value.as_str())
-    }
-
-    /// The control's `statement` prose, if present.
-    pub fn statement(&self) -> Option<&str> {
-        self.parts
-            .iter()
-            .find(|p| p.name == "statement")
-            .and_then(|p| p.prose.as_deref())
-    }
-}
-
-impl OscalDocument {
-    /// The framework this catalog declares (`metadata.props[name="framework"]`).
-    pub fn framework(&self) -> Option<ComplianceFramework> {
-        framework_from_str(self.catalog.metadata.prop("framework")?)
-    }
-
-    /// The catalog `content-hash` prop — consumers pin this to snapshot/detect drift.
-    pub fn content_hash(&self) -> Option<&str> {
-        self.catalog.metadata.prop("content-hash")
-    }
-
-    /// Flatten the catalog into the corpus controls the mapping engine consumes.
-    pub fn to_controls(&self) -> Vec<CorpusControl> {
-        let framework = self.framework().unwrap_or(ComplianceFramework::Cra);
-        let source_label = self.catalog.metadata.title.as_str();
-        let mut out = Vec::new();
-        for group in &self.catalog.groups {
-            collect_group(group, framework, source_label, &mut out);
-        }
-        out
-    }
-}
-
-/// Map an OSCAL framework token (e.g. `"cra"`) to [`ComplianceFramework`] via its
-/// serde snake_case representation.
-fn framework_from_str(raw: &str) -> Option<ComplianceFramework> {
-    serde_json::from_value(serde_json::Value::String(raw.to_string())).ok()
-}
-
-fn collect_group(
-    group: &Group,
-    framework: ComplianceFramework,
-    source_label: &str,
-    out: &mut Vec<CorpusControl>,
-) {
-    for control in &group.controls {
-        collect_control(control, framework, source_label, out);
-    }
-    for sub in &group.groups {
-        collect_group(sub, framework, source_label, out);
-    }
-}
-
-fn collect_control(
-    control: &Control,
-    framework: ComplianceFramework,
-    source_label: &str,
-    out: &mut Vec<CorpusControl>,
-) {
-    let source = match control.prop("annex-anchor") {
-        Some(anchor) => Some(format!("{source_label} · {anchor}")),
-        None => Some(source_label.to_string()),
-    };
-    out.push(CorpusControl {
-        id: control.id.clone(),
-        framework,
-        title: control.title.clone(),
-        text: control.statement().unwrap_or_default().to_string(),
-        source,
-    });
-    for enhancement in &control.controls {
-        collect_control(enhancement, framework, source_label, out);
-    }
-}
-
-#[cfg(test)]
-#[allow(clippy::unwrap_used)]
-mod tests {
-    use super::*;
-
-    const CATALOG: &str = include_str!("../../tests/data/cra_catalog.json");
-
-    fn parse() -> OscalDocument {
-        serde_json::from_str(CATALOG).unwrap()
-    }
-
-    #[test]
-    fn parses_full_catalog() {
-        let doc = parse();
-        assert_eq!(doc.catalog.metadata.oscal_version, "1.1.2");
-        assert!(!doc.catalog.groups.is_empty());
-        assert!(doc.catalog.back_matter.is_some());
-    }
-
-    #[test]
-    fn maps_all_controls_to_corpus() {
-        let doc = parse();
-        let controls = doc.to_controls();
-        assert_eq!(controls.len(), 40);
-        assert_eq!(doc.framework(), Some(ComplianceFramework::Cra));
-
-        let c8 = controls.iter().find(|c| c.id == "cra-ai-8").unwrap();
-        assert_eq!(c8.framework, ComplianceFramework::Cra);
-        assert!(!c8.title.is_empty());
-        assert!(!c8.text.is_empty(), "statement prose should map into text");
-        assert!(c8.source.as_deref().unwrap_or_default().contains("Annex I"));
-    }
-
-    #[test]
-    fn exposes_content_hash_for_snapshotting() {
-        assert_eq!(parse().content_hash().map(str::len), Some(64));
-    }
-}

compliance-core/src/models/repository.rs

@@ -1,6 +1,8 @@
-use serde::{Deserialize, Serialize};
+use chrono::{DateTime, Utc};
+use serde::{Deserialize, Deserializer, Serialize};
+
+use super::issue::TrackerType;
 
-/// What initiated a scan.
 #[derive(Debug, Clone, Serialize, Deserialize, PartialEq, Eq)]
 #[serde(rename_all = "snake_case")]
 pub enum ScanTrigger {
@@ -8,3 +10,92 @@ pub enum ScanTrigger {
     Webhook,
     Manual,
 }
+
+#[derive(Debug, Clone, Serialize, Deserialize)]
+pub struct TrackedRepository {
+    #[serde(rename = "_id", skip_serializing_if = "Option::is_none")]
+    pub id: Option<bson::oid::ObjectId>,
+    #[serde(default)]
+    pub name: String,
+    #[serde(default)]
+    pub git_url: String,
+    #[serde(default = "default_branch")]
+    pub default_branch: String,
+    pub local_path: Option<String>,
+    pub scan_schedule: Option<String>,
+    #[serde(default)]
+    pub webhook_enabled: bool,
+    /// Auto-generated HMAC secret for verifying incoming webhooks
+    #[serde(default, skip_serializing_if = "Option::is_none")]
+    pub webhook_secret: Option<String>,
+    pub tracker_type: Option<TrackerType>,
+    pub tracker_owner: Option<String>,
+    pub tracker_repo: Option<String>,
+    /// Optional per-repo PAT for the issue tracker (GitHub/GitLab/Jira)
+    #[serde(default, skip_serializing_if = "Option::is_none")]
+    pub tracker_token: Option<String>,
+    /// Optional auth token for HTTPS private repos (PAT or password)
+    #[serde(default, skip_serializing_if = "Option::is_none")]
+    pub auth_token: Option<String>,
+    /// Optional username for HTTPS auth (defaults to "x-access-token" for PATs)
+    #[serde(default, skip_serializing_if = "Option::is_none")]
+    pub auth_username: Option<String>,
+    pub last_scanned_commit: Option<String>,
+    #[serde(default, deserialize_with = "deserialize_findings_count")]
+    pub findings_count: u32,
+    #[serde(
+        default = "chrono::Utc::now",
+        with = "super::serde_helpers::bson_datetime"
+    )]
+    pub created_at: DateTime<Utc>,
+    #[serde(
+        default = "chrono::Utc::now",
+        with = "super::serde_helpers::bson_datetime"
+    )]
+    pub updated_at: DateTime<Utc>,
+}
+
+fn default_branch() -> String {
+    "main".to_string()
+}
+
+fn deserialize_findings_count<'de, D>(deserializer: D) -> Result<u32, D::Error>
+where
+    D: Deserializer<'de>,
+{
+    let bson = bson::Bson::deserialize(deserializer)?;
+    match &bson {
+        bson::Bson::Int32(n) => Ok(*n as u32),
+        bson::Bson::Int64(n) => Ok(*n as u32),
+        bson::Bson::Double(n) => Ok(*n as u32),
+        _ => Ok(0),
+    }
+}
+
+impl TrackedRepository {
+    pub fn new(name: String, git_url: String) -> Self {
+        let now = Utc::now();
+        // Generate a random webhook secret (hex-encoded UUID v4, no dashes)
+        let webhook_secret = uuid::Uuid::new_v4().to_string().replace('-', "");
+        Self {
+            id: None,
+            name,
+            git_url,
+            default_branch: "main".to_string(),
+            local_path: None,
+            scan_schedule: None,
+            auth_token: None,
+            auth_username: None,
+            webhook_enabled: false,
+            webhook_secret: Some(webhook_secret),
+            tracker_type: None,
+            tracker_owner: None,
+            tracker_repo: None,
+            tracker_token: None,
+            last_scanned_commit: None,
+            findings_count: 0,
+            created_at: now,
+            updated_at: now,
+        }
+    }
+}

compliance-core/src/models/scan.rs

@@ -24,9 +24,6 @@ pub enum ScanType {
     MobileStatic,
     /// Static analysis of a container image.
     ContainerScan,
-    /// Dynamic probing of a running PLC/SPS device over industrial protocols
-    /// (Modbus/TCP, OPC UA, …) for exposed/unauthenticated control access.
-    IcsProbe,
 }
 
 impl std::fmt::Display for ScanType {
@@ -46,7 +43,6 @@ impl std::fmt::Display for ScanType {
             Self::PlcControlLogic => write!(f, "plc_control_logic"),
             Self::MobileStatic => write!(f, "mobile_static"),
             Self::ContainerScan => write!(f, "container_scan"),
-            Self::IcsProbe => write!(f, "ics_probe"),
         }
     }
 }
@@ -80,7 +76,6 @@ pub enum ScanPhase {
     LlmTriage,
     IssueCreation,
     DastScanning,
-    IcsProbe,
     Completed,
 }
 

compliance-core/src/models/werkbank.rs

@@ -1,514 +0,0 @@
-//! The Werkbank job/result contract (WB-01).
-//!
-//! The shared, dependency-free vocabulary the control plane and the Werkbank
-//! execution runner agree on: what a [`Job`] is, which [`Executor`] runs it, how
-//! it moves through the queue ([`JobStatus`]), and what a [`JobResult`] carries
-//! back. Jobs are declarative — TOML on disk, JSON on the wire — and results
-//! reuse the existing scanner result types ([`Finding`], [`DastFinding`],
-//! [`SbomEntry`]) so the runner produces exactly what the control plane persists.
-//!
-//! This module is intentionally free of the `mongodb`/`axum` features so the
-//! runner can depend on `compliance-core` without pulling the server stack.
-
-use std::collections::BTreeMap;
-
-use chrono::{DateTime, Utc};
-use serde::{Deserialize, Serialize};
-
-use super::dast::DastFinding;
-use super::finding::Finding;
-use super::sbom::SbomEntry;
-
-/// The kind of dynamic-execution job.
-#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
-#[serde(rename_all = "kebab-case")]
-pub enum JobType {
-    /// Instantiate control logic on an ephemeral soft-PLC and probe it.
-    PlcProvision,
-    /// Boot a firmware image under QEMU and run dynamic checks.
-    QemuBoot,
-    /// Crawl and dynamically test a running web endpoint.
-    Dast,
-    /// Run an active penetration test against a running target.
-    Pentest,
-}
-
-/// How a runner executes a job — the CI-runner-style classification. A runner
-/// advertises exactly one; a job requires one.
-#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
-#[serde(rename_all = "lowercase")]
-pub enum Executor {
-    /// A subprocess on the runner host (dev / trusted single-node).
-    Shell,
-    /// One or more containers on the runner's Docker (default; QEMU runs here).
-    Docker,
-    /// A Pod/Job in a Kubernetes cluster (scale-out / multi-tenant).
-    K8s,
-}
-
-/// Lifecycle state of a job in the queue.
-#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
-#[serde(rename_all = "lowercase")]
-pub enum JobStatus {
-    /// Waiting to be leased.
-    Queued,
-    /// Leased by a runner but not yet started.
-    Leased,
-    /// Executing on a runner.
-    Running,
-    /// Completed successfully.
-    Succeeded,
-    /// Completed with an error.
-    Failed,
-    /// The lease/lifetime deadline elapsed before completion.
-    Expired,
-    /// Cancelled by the control plane.
-    Cancelled,
-}
-
-impl JobStatus {
-    /// Whether the job has reached a terminal state (no further transitions).
-    pub fn is_terminal(self) -> bool {
-        matches!(
-            self,
-            JobStatus::Succeeded | JobStatus::Failed | JobStatus::Expired | JobStatus::Cancelled
-        )
-    }
-}
-
-/// A reference to an input artifact. Resolved by the runner from a source it can
-/// reach; the blob itself never flows through the control plane (so an on-prem
-/// runner keeps customer data local). Exactly one of `blob`/`url` should be set.
-#[derive(Debug, Clone, Default, PartialEq, Eq, Serialize, Deserialize)]
-pub struct InputRef {
-    /// Content-addressed blob (e.g. `sha256:…`) the runner fetches from its store.
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub blob: Option<String>,
-    /// A URL the runner can reach (git repo, internal artifact store, …).
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub url: Option<String>,
-}
-
-impl InputRef {
-    /// A content-addressed blob reference.
-    pub fn blob(id: impl Into<String>) -> Self {
-        Self {
-            blob: Some(id.into()),
-            url: None,
-        }
-    }
-}
-
-/// Sandbox runtime knobs. Fields are executor/job-type specific and all optional;
-/// `extra` carries anything not modelled explicitly.
-#[derive(Debug, Clone, Default, PartialEq, Eq, Serialize, Deserialize)]
-pub struct JobRuntime {
-    /// Container image (Docker executor).
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub image: Option<String>,
-    /// Memory cap (e.g. `512m`).
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub memory: Option<String>,
-    /// CPU cap (e.g. `0.5`).
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub cpus: Option<String>,
-    /// Network to join (e.g. `isolated`).
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub network: Option<String>,
-    /// QEMU machine type (qemu-boot).
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub machine: Option<String>,
-    /// QEMU target architecture (qemu-boot).
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub arch: Option<String>,
-    /// Executor-specific extras not modelled above.
-    #[serde(default, skip_serializing_if = "BTreeMap::is_empty")]
-    pub extra: BTreeMap<String, String>,
-}
-
-/// DAST collection settings for jobs that scan a web endpoint.
-#[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
-pub struct DastCollect {
-    /// Maximum crawl depth (kept shallow for ephemeral instances).
-    pub max_crawl_depth: u32,
-}
-
-/// What to collect from a run.
-#[derive(Debug, Clone, Default, PartialEq, Eq, Serialize, Deserialize)]
-pub struct JobCollect {
-    /// Run the industrial-protocol probe (Modbus/OPC-UA/EtherNet-IP).
-    #[serde(default)]
-    pub ics_probe: bool,
-    /// Run DAST against the provisioned/booted web endpoint.
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub dast: Option<DastCollect>,
-    /// Run an active pentest.
-    #[serde(default)]
-    pub pentest: bool,
-    /// Collect an SBOM.
-    #[serde(default)]
-    pub sbom: bool,
-}
-
-/// A declarative dynamic-execution job the control plane enqueues and a Werkbank
-/// runner leases and executes.
-#[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
-pub struct Job {
-    /// Unique job id (assigned by the control plane on enqueue).
-    pub id: String,
-    /// What kind of job this is.
-    #[serde(rename = "type")]
-    pub job_type: JobType,
-    /// Owning tenant.
-    pub tenant: String,
-    /// The onboarded target this job tests.
-    pub target_id: String,
-    /// The executor a runner must provide to run this job.
-    pub executor: Executor,
-    /// Runner capabilities this job requires (e.g. `arch=amd64`, `kvm=true`).
-    #[serde(default, skip_serializing_if = "Vec::is_empty")]
-    pub labels: Vec<String>,
-    /// Hard lifetime deadline for the whole job.
-    pub timeout_secs: u64,
-    /// Named input artifacts (e.g. `program`, `firmware`), by reference.
-    #[serde(default, skip_serializing_if = "BTreeMap::is_empty")]
-    pub inputs: BTreeMap<String, InputRef>,
-    /// Sandbox runtime knobs.
-    #[serde(default)]
-    pub runtime: JobRuntime,
-    /// What to collect from the run.
-    #[serde(default)]
-    pub collect: JobCollect,
-}
-
-impl Job {
-    /// A `plc-provision` job: instantiate the control logic named `program` on an
-    /// ephemeral soft-PLC (Docker executor) and collect the ICS probe + DAST.
-    pub fn plc_provision(
-        id: impl Into<String>,
-        tenant: impl Into<String>,
-        target_id: impl Into<String>,
-        program: InputRef,
-        timeout_secs: u64,
-    ) -> Self {
-        let mut inputs = BTreeMap::new();
-        inputs.insert("program".to_string(), program);
-        Self {
-            id: id.into(),
-            job_type: JobType::PlcProvision,
-            tenant: tenant.into(),
-            target_id: target_id.into(),
-            executor: Executor::Docker,
-            labels: Vec::new(),
-            timeout_secs,
-            inputs,
-            runtime: JobRuntime::default(),
-            collect: JobCollect {
-                ics_probe: true,
-                dast: Some(DastCollect { max_crawl_depth: 2 }),
-                pentest: false,
-                sbom: false,
-            },
-        }
-    }
-}
-
-/// The outcome of running a job, posted back to the control plane. Findings and
-/// SBOM reuse the shared scanner types, so the control plane persists them
-/// unchanged. Submission is idempotent — keyed by [`JobResult::job_id`].
-#[derive(Debug, Clone, Default, Serialize, Deserialize)]
-pub struct JobResult {
-    /// The job this result is for.
-    pub job_id: String,
-    /// Terminal status of the job.
-    pub status: Option<JobStatus>,
-    /// General scanner findings (e.g. ICS-probe findings).
-    #[serde(default, skip_serializing_if = "Vec::is_empty")]
-    pub findings: Vec<Finding>,
-    /// DAST findings from a web-endpoint scan.
-    #[serde(default, skip_serializing_if = "Vec::is_empty")]
-    pub dast_findings: Vec<DastFinding>,
-    /// SBOM components collected from the run.
-    #[serde(default, skip_serializing_if = "Vec::is_empty")]
-    pub sbom: Vec<SbomEntry>,
-    /// Error message when the job failed.
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub error: Option<String>,
-    /// Captured execution log (truncated by the runner).
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub logs: Option<String>,
-    /// When execution started on the runner.
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub started_at: Option<DateTime<Utc>>,
-    /// When execution finished.
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub finished_at: Option<DateTime<Utc>>,
-}
-
-impl JobResult {
-    /// A successful result for a job.
-    pub fn succeeded(job_id: impl Into<String>) -> Self {
-        Self {
-            job_id: job_id.into(),
-            status: Some(JobStatus::Succeeded),
-            ..Default::default()
-        }
-    }
-
-    /// A failed result carrying an error message.
-    pub fn failed(job_id: impl Into<String>, error: impl Into<String>) -> Self {
-        Self {
-            job_id: job_id.into(),
-            status: Some(JobStatus::Failed),
-            error: Some(error.into()),
-            ..Default::default()
-        }
-    }
-}
-
-/// A queued job as persisted by the control plane (WB-02): the [`Job`] contract
-/// plus the queue bookkeeping — status, lease ownership, attempt count, and the
-/// eventual result. The runner never sees this record; on lease it receives a
-/// [`LeasedJob`] (the job plus a token it presents to heartbeat/complete).
-///
-/// Timestamps persist as native BSON dates so the queue's range queries (lease
-/// FIFO by `created_at`, visibility-timeout sweep by `lease_expires_at`) compare
-/// correctly.
-#[derive(Debug, Clone, Serialize, Deserialize)]
-pub struct JobRecord {
-    /// The job to run.
-    pub job: Job,
-    /// Current queue state.
-    pub status: JobStatus,
-    /// The lease token held by the current runner (proves lease ownership).
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub lease_token: Option<String>,
-    /// Id of the runner holding the lease.
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub leased_by: Option<String>,
-    /// When the current lease expires — the visibility timeout after which a
-    /// crashed runner's job is swept back to `queued`.
-    #[serde(default, with = "super::serde_helpers::opt_bson_datetime")]
-    pub lease_expires_at: Option<DateTime<Utc>>,
-    /// Last heartbeat from the runner.
-    #[serde(default, with = "super::serde_helpers::opt_bson_datetime")]
-    pub heartbeat_at: Option<DateTime<Utc>>,
-    /// How many times the job has been leased (incremented on each lease).
-    #[serde(default)]
-    pub attempts: u32,
-    /// Set when the control plane requests cancellation; the runner sees it on
-    /// its next heartbeat and aborts.
-    #[serde(default)]
-    pub cancel_requested: bool,
-    /// The result, once the job reaches a terminal state.
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub result: Option<JobResult>,
-    /// When the job was enqueued.
-    #[serde(with = "super::serde_helpers::bson_datetime")]
-    pub created_at: DateTime<Utc>,
-    /// Last modification.
-    #[serde(with = "super::serde_helpers::bson_datetime")]
-    pub updated_at: DateTime<Utc>,
-}
-
-impl JobRecord {
-    /// A freshly-enqueued (`queued`) record for a job.
-    pub fn queued(job: Job, now: DateTime<Utc>) -> Self {
-        Self {
-            job,
-            status: JobStatus::Queued,
-            lease_token: None,
-            leased_by: None,
-            lease_expires_at: None,
-            heartbeat_at: None,
-            attempts: 0,
-            cancel_requested: false,
-            result: None,
-            created_at: now,
-            updated_at: now,
-        }
-    }
-}
-
-/// A job handed to a runner on lease: what to run plus the token the runner must
-/// present to heartbeat and complete it.
-#[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
-pub struct LeasedJob {
-    /// The job to execute.
-    pub job: Job,
-    /// The lease token proving ownership (opaque to the runner).
-    pub lease_token: String,
-}
-
-/// The runner's view of a heartbeat: whether the control plane has asked the job
-/// to stop. `None` from the queue means the lease was lost (token mismatch or the
-/// job already terminal) and the runner should abandon the work.
-#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
-pub struct HeartbeatAck {
-    /// The control plane requested cancellation — the runner should tear down.
-    pub cancelled: bool,
-}
-
-// --- Runner ↔ control-plane transport (the pull API wire types) ---------------
-// Shared so the runner (client) and the control plane (server) agree on shapes.
-
-/// Runner → control plane: lease the oldest runnable job for this runner.
-#[derive(Debug, Clone, Serialize, Deserialize)]
-pub struct LeaseRequest {
-    /// The tenant queue to lease from.
-    pub tenant: String,
-    /// The runner id (advertised for attribution).
-    pub runner_id: String,
-    /// The executor this runner provides.
-    pub executor: Executor,
-    /// The capability labels this runner advertises.
-    #[serde(default)]
-    pub labels: Vec<String>,
-    /// Requested lease lifetime (the visibility timeout), in seconds.
-    pub lease_ttl_secs: u64,
-}
-
-/// Runner → control plane: prove lease ownership and extend it.
-#[derive(Debug, Clone, Serialize, Deserialize)]
-pub struct HeartbeatRequest {
-    /// The tenant queue.
-    pub tenant: String,
-    /// The job being worked.
-    pub job_id: String,
-    /// The lease token from the [`LeasedJob`].
-    pub lease_token: String,
-    /// Lease lifetime to extend to, in seconds.
-    pub lease_ttl_secs: u64,
-}
-
-/// Runner → control plane: record a job's terminal result.
-#[derive(Debug, Clone, Serialize, Deserialize)]
-pub struct CompleteRequest {
-    /// The tenant queue.
-    pub tenant: String,
-    /// The job being completed.
-    pub job_id: String,
-    /// The lease token proving ownership.
-    pub lease_token: String,
-    /// The result to record.
-    pub result: JobResult,
-}
-
-/// Control plane → runner: whether the completion was recorded (false if the
-/// lease was already lost — token mismatch or the job had become terminal).
-#[derive(Debug, Clone, Copy, Serialize, Deserialize)]
-pub struct CompleteResponse {
-    /// Whether the result was recorded.
-    pub recorded: bool,
-}
-
-#[cfg(test)]
-#[allow(clippy::expect_used, clippy::unwrap_used)]
-mod tests {
-    use super::*;
-
-    #[test]
-    fn job_round_trips_through_json() {
-        let job = Job::plc_provision("job_1", "acme", "64f0aa", InputRef::blob("sha256:abc"), 180);
-        let json = serde_json::to_string(&job).expect("serialize");
-        let back: Job = serde_json::from_str(&json).expect("deserialize");
-        assert_eq!(job, back);
-        // Enum wire forms are the kebab/lowercase the contract documents.
-        assert!(json.contains("\"type\":\"plc-provision\""));
-        assert!(json.contains("\"executor\":\"docker\""));
-    }
-
-    #[test]
-    fn parses_the_design_doc_plc_provision_toml() {
-        // The exact shape from docs/DESIGN.md §5 (wrapped in a [job] table).
-        #[derive(Deserialize)]
-        struct JobFile {
-            job: Job,
-        }
-        let src = r#"
-            [job]
-            id = "job_01H"
-            type = "plc-provision"
-            tenant = "acme"
-            target_id = "64f0"
-            executor = "docker"
-            labels = ["arch=amd64"]
-            timeout_secs = 180
-
-            [job.inputs]
-            program = { blob = "sha256:deadbeef" }
-
-            [job.runtime]
-            image = "openplc:latest"
-            memory = "512m"
-            cpus = "0.5"
-            network = "isolated"
-
-            [job.collect]
-            ics_probe = true
-            dast = { max_crawl_depth = 2 }
-        "#;
-        let file: JobFile = toml::from_str(src).expect("parse job toml");
-        let job = file.job;
-        assert_eq!(job.job_type, JobType::PlcProvision);
-        assert_eq!(job.executor, Executor::Docker);
-        assert_eq!(job.labels, vec!["arch=amd64".to_string()]);
-        assert_eq!(
-            job.inputs.get("program").and_then(|i| i.blob.as_deref()),
-            Some("sha256:deadbeef")
-        );
-        assert_eq!(job.runtime.image.as_deref(), Some("openplc:latest"));
-        assert!(job.collect.ics_probe);
-        assert_eq!(job.collect.dast.map(|d| d.max_crawl_depth), Some(2));
-    }
-
-    #[test]
-    fn qemu_boot_runtime_fields_parse() {
-        #[derive(Deserialize)]
-        struct JobFile {
-            job: Job,
-        }
-        let src = r#"
-            [job]
-            id = "j2"
-            type = "qemu-boot"
-            tenant = "acme"
-            target_id = "t"
-            executor = "docker"
-            labels = ["kvm=true"]
-            timeout_secs = 600
-            [job.inputs]
-            firmware = { blob = "sha256:cafe" }
-            [job.runtime]
-            machine = "virt"
-            arch = "arm"
-            memory = "1g"
-        "#;
-        let file: JobFile = toml::from_str(src).expect("parse");
-        assert_eq!(file.job.job_type, JobType::QemuBoot);
-        assert_eq!(file.job.runtime.arch.as_deref(), Some("arm"));
-        assert_eq!(
-            file.job
-                .inputs
-                .get("firmware")
-                .and_then(|i| i.blob.as_deref()),
-            Some("sha256:cafe")
-        );
-    }
-
-    #[test]
-    fn status_terminality() {
-        assert!(JobStatus::Succeeded.is_terminal());
-        assert!(JobStatus::Expired.is_terminal());
-        assert!(!JobStatus::Queued.is_terminal());
-        assert!(!JobStatus::Running.is_terminal());
-    }
-
-    #[test]
-    fn result_constructors() {
-        assert_eq!(JobResult::succeeded("j").status, Some(JobStatus::Succeeded));
-        let f = JobResult::failed("j", "boom");
-        assert_eq!(f.status, Some(JobStatus::Failed));
-        assert_eq!(f.error.as_deref(), Some("boom"));
-    }
-}

compliance-core/src/scan_matrix.rs

@@ -14,12 +14,8 @@ use crate::models::{ArtifactKind, OnboardedTarget, ScanType, TargetType};
 pub enum ArtifactRequirement {
     /// Source code — a git repo or a source archive.
     Code,
-    /// A reachable running instance (any live URL / endpoint, scheme-agnostic —
-    /// e.g. the ICS probe works off the host:port of a modbus:// or http:// ref).
+    /// A reachable running instance (live URL / endpoint).
     RunningUrl,
-    /// A reachable **web** endpoint — a live URL with an http(s) scheme. DAST is
-    /// an HTTP crawler, so a modbus:// / opc.tcp:// endpoint does not satisfy it.
-    HttpUrl,
     /// A firmware image / binary blob.
     Firmware,
     /// A PLC project (PLCopen XML or Structured Text).
@@ -138,7 +134,7 @@ fn sast_umbrella() -> Vec<ScanRule> {
 /// The rule set for a target type. Scans that are never applicable to a type are
 /// simply absent (e.g. DAST is not listed for a PLC target).
 pub fn rules_for(target_type: TargetType) -> Vec<ScanRule> {
-    use ArtifactRequirement::{Firmware, HttpUrl, Mobile, Plc, RunningUrl};
+    use ArtifactRequirement::{Firmware, Mobile, Plc, RunningUrl};
     match target_type {
         TargetType::WebApp | TargetType::BackendService => {
             let mut r = sast_umbrella();
@@ -146,7 +142,7 @@ pub fn rules_for(target_type: TargetType) -> Vec<ScanRule> {
                 ScanType::Dast,
                 true,
                 "Dynamic scan of the running endpoint",
-                HttpUrl,
+                RunningUrl,
             ));
             r
         }
@@ -207,62 +203,16 @@ pub fn rules_for(target_type: TargetType) -> Vec<ScanRule> {
                 ScanType::Dast,
                 false,
                 "Dynamic scan of exposed network services (if any)",
-                HttpUrl,
+                RunningUrl,
             ));
             r
         }
-        TargetType::PlcSps => {
-            // A PLC/SPS device is a composite: the control application *and* the
-            // device it runs on (firmware/OS + reachable runtime services). The
-            // control-logic scan runs on the PLC project; the firmware and DAST
-            // scans light up only when a firmware image / running endpoint is
-            // attached (e.g. a CODESYS runtime on a Yocto image with WebVisu).
-            // Firmware-image SBOM/CVE *execution* is shared with the firmware
-            // families and tracked in #151/#128; DAST over a WebVisu/OPC-UA
-            // endpoint uses the existing DAST path.
-            vec![
-                ScanRule::new(
-                    ScanType::PlcControlLogic,
-                    true,
-                    "Control-logic security rules over the PLC program",
-                    Plc,
-                ),
-                // Device-level scans are offered but opt-in (default-off): they
-                // apply only when a firmware image is attached, and firmware-image
-                // SBOM/CVE *execution* is shared with the firmware families and
-                // still landing (#151/#128), so they must not silently auto-run.
-                ScanRule::new(
-                    ScanType::FirmwareStatic,
-                    false,
-                    "Static analysis of the device firmware image (OS + runtime)",
-                    Firmware,
-                ),
-                ScanRule::new(
-                    ScanType::Sbom,
-                    false,
-                    "SBOM from the device firmware image (OS packages + CODESYS runtime)",
-                    Firmware,
-                ),
-                ScanRule::new(
-                    ScanType::Cve,
-                    false,
-                    "Match device firmware components against known CVEs",
-                    Firmware,
-                ),
-                ScanRule::new(
-                    ScanType::Dast,
-                    false,
-                    "Dynamic scan of the running device (WebVisu / exposed services)",
-                    HttpUrl,
-                ),
-                ScanRule::new(
-                    ScanType::IcsProbe,
-                    false,
-                    "Probe the running device over industrial protocols (Modbus/TCP, …)",
-                    RunningUrl,
-                ),
-            ]
-        }
+        TargetType::PlcSps => vec![ScanRule::new(
+            ScanType::PlcControlLogic,
+            true,
+            "Control-logic security rules over the PLC program",
+            Plc,
+        )],
     }
 }
 
@@ -279,9 +229,6 @@ pub fn supports_pentest(target_type: TargetType) -> bool {
             | TargetType::AndroidApp
             | TargetType::IosApp
             | TargetType::EmbeddedLinuxYocto
-            // A PLC/SPS device exposes reachable runtime services (WebVisu, OPC UA,
-            // the CODESYS programming protocol), so an active pentest applies.
-            | TargetType::PlcSps
     )
 }
 
@@ -289,9 +236,7 @@ pub fn supports_pentest(target_type: TargetType) -> bool {
 fn representative_kind(req: ArtifactRequirement) -> Option<ArtifactKind> {
     match req {
         ArtifactRequirement::Code => Some(ArtifactKind::GitRepo),
-        ArtifactRequirement::RunningUrl | ArtifactRequirement::HttpUrl => {
-            Some(ArtifactKind::LiveUrl)
-        }
+        ArtifactRequirement::RunningUrl => Some(ArtifactKind::LiveUrl),
         ArtifactRequirement::Firmware => Some(ArtifactKind::FirmwareImage),
         ArtifactRequirement::Plc => Some(ArtifactKind::PlcProject),
         ArtifactRequirement::Mobile => Some(ArtifactKind::MobilePackage),
@@ -300,29 +245,13 @@ fn representative_kind(req: ArtifactRequirement) -> Option<ArtifactKind> {
     }
 }
 
-/// Whether a live-URL reference is an http(s) web endpoint (vs. an industrial
-/// endpoint like `modbus://` / `opc.tcp://`, which DAST cannot crawl).
-fn is_http_url(source_ref: &str) -> bool {
-    let s = source_ref.trim();
-    s.starts_with("http://") || s.starts_with("https://")
-}
-
 /// Whether the target carries an artifact that satisfies the requirement.
 fn requirement_satisfied(req: ArtifactRequirement, target: &OnboardedTarget) -> bool {
     match req {
         ArtifactRequirement::Code => target.code_artifact().is_some(),
         ArtifactRequirement::RunningUrl => target.has(ArtifactKind::LiveUrl),
-        ArtifactRequirement::HttpUrl => target
-            .artifacts
-            .iter()
-            .any(|a| a.kind == ArtifactKind::LiveUrl && is_http_url(&a.source_ref)),
         ArtifactRequirement::Firmware => target.has(ArtifactKind::FirmwareImage),
-        // A PLC project artifact, or a code artifact (git repo / source archive)
-        // holding the control logic as PLCopen XML / ST exports — the common way
-        // CODESYS projects are version-controlled.
-        ArtifactRequirement::Plc => {
-            target.has(ArtifactKind::PlcProject) || target.code_artifact().is_some()
-        }
+        ArtifactRequirement::Plc => target.has(ArtifactKind::PlcProject),
         ArtifactRequirement::Mobile => target.has(ArtifactKind::MobilePackage),
         ArtifactRequirement::Container => target.has(ArtifactKind::ContainerImage),
         ArtifactRequirement::Any => true,
@@ -339,10 +268,6 @@ pub fn applicable_scans(target: &OnboardedTarget) -> Vec<ScanOption> {
             let required_artifact = representative_kind(rule.requires);
             let blocked_reason = if satisfied {
                 None
-            } else if rule.requires == ArtifactRequirement::HttpUrl {
-                // A live URL may be present but non-HTTP (e.g. modbus://): be
-                // specific so the user knows DAST needs a web endpoint.
-                Some("no http(s) live URL — DAST needs a web endpoint".to_string())
             } else {
                 Some(match required_artifact {
                     Some(kind) => format!("no {kind} artifact provided"),
@@ -415,124 +340,22 @@ mod tests {
     }
 
     #[test]
-    fn plc_control_logic_is_default_on_and_device_scans_block_without_artifacts() {
-        // A PLC project alone: control-logic runs; the device-level scans are
-        // offered but blocked until a firmware image / running endpoint is added.
+    fn plc_offers_only_control_logic() {
         let t = target_with(
             TargetType::PlcSps,
             vec![Artifact::plc_project("p.xml", PlcFormat::PlcopenXml)],
         );
         let opts = applicable_scans(&t);
-        let plc = option(&opts, ScanType::PlcControlLogic).expect("control-logic offered");
-        assert!(plc.default_on && plc.blocked_reason.is_none());
-        for scan in [ScanType::FirmwareStatic, ScanType::Sbom, ScanType::Cve] {
-            let o = option(&opts, scan).expect("device scan offered");
-            assert!(
-                !o.default_on,
-                "{scan} must not pre-select without a firmware image"
-            );
-            assert!(o.blocked_reason.is_some());
-        }
-        let dast = option(&opts, ScanType::Dast).expect("dast offered");
-        assert!(!dast.default_on);
-        assert!(dast.blocked_reason.is_some());
-    }
-
-    #[test]
-    fn plc_control_logic_is_satisfied_by_a_git_repo() {
-        // A CODESYS project version-controlled in git (PLCopen XML / ST exports),
-        // no uploaded PlcProject artifact.
-        let t = target_with(TargetType::PlcSps, vec![Artifact::git_repo("u", "main")]);
-        let opts = applicable_scans(&t);
-        let plc = option(&opts, ScanType::PlcControlLogic).expect("control-logic offered");
-        assert!(
-            plc.default_on && plc.blocked_reason.is_none(),
-            "a git repo should satisfy PLC control-logic"
-        );
-    }
-
-    #[test]
-    fn plc_composite_lights_up_device_scans_with_firmware_and_url() {
-        // A CODESYS-on-Yocto device: PLC project + firmware image + WebVisu URL.
-        let t = target_with(
-            TargetType::PlcSps,
-            vec![
-                Artifact::plc_project("p.xml", PlcFormat::PlcopenXml),
-                Artifact::firmware_image("device.img"),
-                Artifact::live_url("http://plc.local/webvisu"),
-            ],
-        );
-        let opts = applicable_scans(&t);
-        for scan in [
-            ScanType::PlcControlLogic,
-            ScanType::FirmwareStatic,
-            ScanType::Sbom,
-            ScanType::Cve,
-        ] {
-            let o = option(&opts, scan).expect("scan offered");
-            assert!(o.blocked_reason.is_none(), "{scan} should be unblocked");
-        }
-        // Control-logic auto-runs; the device-level scans are unblocked but opt-in
-        // (default-off) until firmware-image execution lands (#151/#128).
-        assert!(option(&opts, ScanType::PlcControlLogic).unwrap().default_on);
-        assert!(!option(&opts, ScanType::Sbom).unwrap().default_on);
-        assert!(!option(&opts, ScanType::Dast).unwrap().default_on);
-        assert!(option(&opts, ScanType::Dast)
-            .unwrap()
-            .blocked_reason
-            .is_none());
-    }
-
-    #[test]
-    fn plc_with_modbus_url_offers_ics_probe_but_blocks_dast() {
-        // A soft-PLC reachable only over Modbus/TCP (no WebVisu). The ICS probe
-        // is applicable (it works off host:port), but DAST — an HTTP crawler —
-        // must be blocked so it isn't offered/run against a non-web endpoint.
-        let t = target_with(
-            TargetType::PlcSps,
-            vec![Artifact::live_url("modbus://plc-sim:502")],
-        );
-        let opts = applicable_scans(&t);
-        let ics = option(&opts, ScanType::IcsProbe).expect("ics probe offered");
-        assert!(
-            ics.blocked_reason.is_none(),
-            "ICS probe should be unblocked for a modbus:// endpoint"
-        );
-        assert!(!ics.default_on, "ICS probe stays opt-in (default-off)");
-        let dast = option(&opts, ScanType::Dast).expect("dast listed");
-        assert!(
-            dast.blocked_reason.is_some(),
-            "DAST must be blocked without an http(s) endpoint"
-        );
-        assert!(!dast.default_on);
-    }
-
-    #[test]
-    fn plc_with_http_webvisu_offers_both_dast_and_ics_probe() {
-        // A PLC exposing a WebVisu over HTTP: both DAST (web) and the ICS probe
-        // (OT ports on the same host) are applicable.
-        let t = target_with(
-            TargetType::PlcSps,
-            vec![Artifact::live_url("http://plc.local/webvisu")],
-        );
-        let opts = applicable_scans(&t);
-        assert!(option(&opts, ScanType::Dast)
-            .expect("dast offered")
-            .blocked_reason
-            .is_none());
-        assert!(option(&opts, ScanType::IcsProbe)
-            .expect("ics probe offered")
-            .blocked_reason
-            .is_none());
+        assert_eq!(opts.len(), 1);
+        assert_eq!(opts[0].scan, ScanType::PlcControlLogic);
+        assert!(opts[0].default_on);
     }
 
     #[test]
     fn pentest_support_matches_reachable_families() {
         assert!(supports_pentest(TargetType::WebApp));
         assert!(supports_pentest(TargetType::BackendService));
-        assert!(supports_pentest(TargetType::EmbeddedLinuxYocto));
-        // A PLC/SPS device is network-reachable (WebVisu / OPC UA / 11740).
-        assert!(supports_pentest(TargetType::PlcSps));
+        assert!(!supports_pentest(TargetType::PlcSps));
         assert!(!supports_pentest(TargetType::FirmwareBareMetal));
         assert!(!supports_pentest(TargetType::DesktopApp));
     }

compliance-dashboard/src/app.rs

@@ -10,10 +10,8 @@ pub enum Route {
     #[layout(AppShell)]
         #[route("/")]
         OverviewPage {},
-        #[route("/targets")]
-        TargetsPage {},
-        #[route("/onboard")]
-        OnboardingPage {},
+        #[route("/repositories")]
+        RepositoriesPage {},
         #[route("/findings")]
         FindingsPage {},
         #[route("/findings/:id")]

compliance-dashboard/src/components/pentest_wizard.rs

@@ -4,9 +4,8 @@ use dioxus_free_icons::Icon;
 
 use crate::app::Route;
 use crate::infrastructure::dast::fetch_dast_targets;
-use crate::infrastructure::onboarding::fetch_targets;
 use crate::infrastructure::pentest::{create_pentest_session_wizard, lookup_repo_by_url};
-use crate::infrastructure::repositories::fetch_ssh_public_key;
+use crate::infrastructure::repositories::{fetch_repositories, fetch_ssh_public_key};
 
 const DISCLAIMER_TEXT: &str = "I confirm that I have authorization to perform security testing \
 against the specified target. I understand that penetration testing may cause disruption to the \
@@ -40,7 +39,7 @@ pub fn PentestWizard(show: Signal<bool>) -> Element {
     let mut show_target_dropdown = use_signal(|| false);
     let mut show_repo_dropdown = use_signal(|| false);
     let existing_targets = use_resource(|| async { fetch_dast_targets().await.ok() });
-    let existing_repos = use_resource(|| async { fetch_targets().await.ok() });
+    let existing_repos = use_resource(|| async { fetch_repositories(1).await.ok() });
 
     // SSH key state for private repos
     let mut ssh_public_key = use_signal(String::new);
@@ -212,25 +211,7 @@ pub fn PentestWizard(show: Signal<bool>) -> Element {
             Some(Some(data)) => data
                 .data
                 .iter()
-                .filter_map(|t| {
-                    let name = t
-                        .get("name")
-                        .and_then(|v| v.as_str())
-                        .unwrap_or_default()
-                        .to_string();
-                    let git_url = t
-                        .get("artifacts")
-                        .and_then(|a| a.as_array())
-                        .and_then(|arr| {
-                            arr.iter().find(|a| {
-                                a.get("kind").and_then(|k| k.as_str()) == Some("git_repo")
-                            })
-                        })
-                        .and_then(|a| a.get("source_ref"))
-                        .and_then(|s| s.as_str())?
-                        .to_string();
-                    Some((git_url, name))
-                })
+                .map(|r| (r.git_url.clone(), r.name.clone()))
                 .collect(),
             _ => Vec::new(),
         }

compliance-dashboard/src/components/sidebar.rs

@@ -24,15 +24,10 @@ pub fn Sidebar() -> Element {
             icon: rsx! { Icon { icon: BsSpeedometer2, width: 18, height: 18 } },
         },
         NavItem {
-            label: "Targets",
-            route: Route::TargetsPage {},
+            label: "Repositories",
+            route: Route::RepositoriesPage {},
             icon: rsx! { Icon { icon: BsFolder2Open, width: 18, height: 18 } },
         },
-        NavItem {
-            label: "Onboard",
-            route: Route::OnboardingPage {},
-            icon: rsx! { Icon { icon: BsPlusCircle, width: 18, height: 18 } },
-        },
         NavItem {
             label: "Findings",
             route: Route::FindingsPage {},

compliance-dashboard/src/infrastructure/database.rs

@@ -19,6 +19,10 @@ impl Database {
         Ok(Self { inner: db })
     }
 
+    pub fn repositories(&self) -> Collection<TrackedRepository> {
+        self.inner.collection("repositories")
+    }
+
     pub fn findings(&self) -> Collection<Finding> {
         self.inner.collection("findings")
     }

compliance-dashboard/src/infrastructure/mod.rs

@@ -10,7 +10,6 @@ pub mod issues;
 pub mod mcp;
 pub mod mcp_tokens;
 pub mod notifications;
-pub mod onboarding;
 pub mod pentest;
 #[allow(clippy::too_many_arguments)]
 pub mod repositories;

compliance-dashboard/src/infrastructure/onboarding.rs

@@ -1,288 +0,0 @@
-//! Server functions for the onboarding wizard — proxy to the agent's
-//! `/api/v1/targets` endpoints.
-
-use dioxus::prelude::*;
-use serde::{Deserialize, Serialize};
-
-/// One artifact the wizard collects for a target.
-#[derive(Debug, Clone, Serialize, Deserialize, Default, PartialEq)]
-pub struct ArtifactInputDto {
-    pub kind: String,
-    pub source_ref: String,
-    #[serde(skip_serializing_if = "Option::is_none")]
-    pub branch: Option<String>,
-    #[serde(skip_serializing_if = "Option::is_none")]
-    pub plc_format: Option<String>,
-}
-
-#[derive(Debug, Clone, Serialize, Deserialize, Default)]
-pub struct TargetsResponse {
-    pub data: Vec<serde_json::Value>,
-    pub total: Option<u64>,
-}
-
-#[derive(Debug, Clone, Serialize, Deserialize, Default)]
-pub struct TargetResponse {
-    pub data: serde_json::Value,
-}
-
-#[derive(Debug, Clone, Serialize, Deserialize, Default)]
-pub struct ApplicableScansData {
-    #[serde(default)]
-    pub scans: Vec<serde_json::Value>,
-    #[serde(default)]
-    pub pentest_supported: bool,
-}
-
-#[derive(Debug, Clone, Serialize, Deserialize, Default)]
-pub struct ApplicableScansResponse {
-    pub data: ApplicableScansData,
-}
-
-/// Validate a target name. The name is used as the clone directory downstream,
-/// so it must be a single safe segment (no slashes) and free of stray spaces.
-pub fn validate_target_name(name: &str) -> Option<String> {
-    let n = name.trim();
-    if n.is_empty() {
-        return Some("Enter a name".to_string());
-    }
-    if name != n {
-        return Some("Remove the leading/trailing spaces".to_string());
-    }
-    if n.contains('/') || n.contains('\\') {
-        return Some("No slashes — the name becomes a folder (e.g. stm32f411-blinky)".to_string());
-    }
-    None
-}
-
-/// Client-side validation of an artifact reference for its kind. Returns an
-/// error message when the value is obviously wrong for its category, so the
-/// wizard / editor can flag it up front instead of the scan discovering it.
-pub fn validate_artifact_ref(kind: &str, source_ref: &str) -> Option<String> {
-    let s = source_ref;
-    if s.trim().is_empty() {
-        return Some("Cannot be empty".to_string());
-    }
-    if s != s.trim() {
-        return Some("Remove the leading/trailing spaces".to_string());
-    }
-    let no_space = !s.contains(char::is_whitespace);
-    match kind {
-        "git_repo" => {
-            let looks_git = s.starts_with("https://")
-                || s.starts_with("http://")
-                || s.starts_with("ssh://")
-                || s.starts_with("git://")
-                || (s.contains('@') && s.contains(':'));
-            (!(looks_git && no_space))
-                .then(|| "Enter a git URL — https://…, ssh://…, or git@host:path".to_string())
-        }
-        "live_url" => {
-            // http(s) for web/DAST targets; modbus:// and opc.tcp:// for ICS
-            // devices probed by the ICS probe (e.g. modbus://plc:502).
-            let ok = (s.starts_with("https://")
-                || s.starts_with("http://")
-                || s.starts_with("modbus://")
-                || s.starts_with("opc.tcp://"))
-                && no_space;
-            (!ok).then(|| {
-                "Enter a URL — https://app.example.com, or modbus://host:502 for a PLC".to_string()
-            })
-        }
-        "container_image" => {
-            (!no_space).then(|| "Enter an image ref, e.g. registry/name:tag".to_string())
-        }
-        "source_archive" | "firmware_image" | "mobile_package" | "plc_project" => {
-            (!no_space).then(|| "Enter a path or URL (no spaces)".to_string())
-        }
-        // plaintext_description (and anything unknown): accept free-form text.
-        _ => None,
-    }
-}
-
-/// List onboarded targets.
-#[server]
-pub async fn fetch_targets() -> Result<TargetsResponse, ServerFnError> {
-    let resp = super::agent_client::agent_get("/api/v1/targets")
-        .await?
-        .send()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))?;
-    resp.json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))
-}
-
-/// Create a target with the collected artifacts.
-#[server]
-pub async fn create_target(
-    name: String,
-    target_type: String,
-    description: Option<String>,
-    artifacts: Vec<ArtifactInputDto>,
-) -> Result<TargetResponse, ServerFnError> {
-    let body = serde_json::json!({
-        "name": name,
-        "target_type": target_type,
-        "description": description,
-        "artifacts": artifacts,
-    });
-    let resp = super::agent_client::agent_request(reqwest::Method::POST, "/api/v1/targets")
-        .await?
-        .json(&body)
-        .send()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))?;
-    resp.json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))
-}
-
-/// Upload a file artifact (PLC project, firmware image, source archive, mobile
-/// package) to a target — proxied to the agent as multipart.
-#[server]
-pub async fn upload_target_artifact(
-    id: String,
-    kind: String,
-    plc_format: Option<String>,
-    filename: String,
-    bytes: Vec<u8>,
-) -> Result<TargetResponse, ServerFnError> {
-    let mut form = reqwest::multipart::Form::new().text("kind", kind).part(
-        "file",
-        reqwest::multipart::Part::bytes(bytes).file_name(filename),
-    );
-    if let Some(pf) = plc_format {
-        form = form.text("plc_format", pf);
-    }
-    let resp = super::agent_client::agent_request(
-        reqwest::Method::POST,
-        &format!("/api/v1/targets/{id}/artifacts/upload"),
-    )
-    .await?
-    .multipart(form)
-    .send()
-    .await
-    .map_err(|e| ServerFnError::new(e.to_string()))?;
-    resp.json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))
-}
-
-/// Update a target's name / type / artifacts (dashboard editor).
-#[server]
-pub async fn update_target(
-    id: String,
-    name: Option<String>,
-    target_type: Option<String>,
-    artifacts: Option<Vec<ArtifactInputDto>>,
-) -> Result<TargetResponse, ServerFnError> {
-    let mut body = serde_json::Map::new();
-    if let Some(n) = name {
-        body.insert("name".to_string(), serde_json::json!(n));
-    }
-    if let Some(t) = target_type {
-        body.insert("target_type".to_string(), serde_json::json!(t));
-    }
-    if let Some(a) = artifacts {
-        body.insert(
-            "artifacts".to_string(),
-            serde_json::to_value(a).map_err(|e| ServerFnError::new(e.to_string()))?,
-        );
-    }
-    let resp = super::agent_client::agent_request(
-        reqwest::Method::PATCH,
-        &format!("/api/v1/targets/{id}"),
-    )
-    .await?
-    .json(&serde_json::Value::Object(body))
-    .send()
-    .await
-    .map_err(|e| ServerFnError::new(e.to_string()))?;
-    resp.json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))
-}
-
-/// Enable specific opt-in scans on a target by setting `scan_config.enabled_scans`.
-/// `scans` are serde scan-type names (lowercase, no underscores — e.g. `icsprobe`).
-#[server]
-pub async fn enable_target_scans(
-    id: String,
-    scans: Vec<String>,
-) -> Result<TargetResponse, ServerFnError> {
-    let body = serde_json::json!({ "scan_config": { "enabled_scans": scans } });
-    let resp = super::agent_client::agent_request(
-        reqwest::Method::PATCH,
-        &format!("/api/v1/targets/{id}"),
-    )
-    .await?
-    .json(&body)
-    .send()
-    .await
-    .map_err(|e| ServerFnError::new(e.to_string()))?;
-    resp.json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))
-}
-
-/// Run kind-based classification on a target.
-#[server]
-pub async fn detect_target(id: String) -> Result<TargetResponse, ServerFnError> {
-    let resp = super::agent_client::agent_request(
-        reqwest::Method::POST,
-        &format!("/api/v1/targets/{id}/detect"),
-    )
-    .await?
-    .send()
-    .await
-    .map_err(|e| ServerFnError::new(e.to_string()))?;
-    resp.json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))
-}
-
-/// Fetch the scan-applicability matrix for a target.
-#[server]
-pub async fn fetch_applicable_scans(id: String) -> Result<ApplicableScansResponse, ServerFnError> {
-    let resp = super::agent_client::agent_get(&format!("/api/v1/targets/{id}/applicable-scans"))
-        .await?
-        .send()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))?;
-    resp.json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))
-}
-
-/// Delete a target (and cascade its findings / SBOM / scan runs / CVE alerts).
-#[server]
-pub async fn delete_target(id: String) -> Result<serde_json::Value, ServerFnError> {
-    let resp = super::agent_client::agent_request(
-        reqwest::Method::DELETE,
-        &format!("/api/v1/targets/{id}"),
-    )
-    .await?
-    .send()
-    .await
-    .map_err(|e| ServerFnError::new(e.to_string()))?;
-    resp.json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))
-}
-
-/// Trigger a scan for a target.
-#[server]
-pub async fn trigger_target_scan(id: String) -> Result<serde_json::Value, ServerFnError> {
-    let resp = super::agent_client::agent_request(
-        reqwest::Method::POST,
-        &format!("/api/v1/targets/{id}/scan"),
-    )
-    .await?
-    .send()
-    .await
-    .map_err(|e| ServerFnError::new(e.to_string()))?;
-    resp.json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))
-}

compliance-dashboard/src/infrastructure/repositories.rs

@@ -1,10 +1,145 @@
-//! The agent's SSH deploy public key — shown so a read-only deploy key can be
-//! added to private git targets. (The legacy repositories CRUD moved to the
-//! unified onboarding/targets API.)
-
 use dioxus::prelude::*;
+use serde::{Deserialize, Serialize};
+
+use compliance_core::models::TrackedRepository;
+
+#[derive(Debug, Clone, Serialize, Deserialize, Default)]
+pub struct RepositoryListResponse {
+    pub data: Vec<TrackedRepository>,
+    pub total: Option<u64>,
+    pub page: Option<u64>,
+}
+
+#[server]
+pub async fn fetch_repositories(page: u64) -> Result<RepositoryListResponse, ServerFnError> {
+    let path = format!("/api/v1/repositories?page={page}&limit=20");
+    let resp = super::agent_client::agent_get(&path)
+        .await?
+        .send()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))?;
+    let body: RepositoryListResponse = resp
+        .json()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))?;
+    Ok(body)
+}
+
+#[server]
+pub async fn add_repository(
+    name: String,
+    git_url: String,
+    default_branch: String,
+    auth_token: Option<String>,
+    auth_username: Option<String>,
+    tracker_type: Option<String>,
+    tracker_owner: Option<String>,
+    tracker_repo: Option<String>,
+    tracker_token: Option<String>,
+) -> Result<(), ServerFnError> {
+    let mut body = serde_json::json!({
+        "name": name,
+        "git_url": git_url,
+        "default_branch": default_branch,
+    });
+    if let Some(token) = auth_token.filter(|t| !t.is_empty()) {
+        body["auth_token"] = serde_json::Value::String(token);
+    }
+    if let Some(username) = auth_username.filter(|u| !u.is_empty()) {
+        body["auth_username"] = serde_json::Value::String(username);
+    }
+    if let Some(tt) = tracker_type.filter(|t| !t.is_empty()) {
+        body["tracker_type"] = serde_json::Value::String(tt);
+    }
+    if let Some(to) = tracker_owner.filter(|t| !t.is_empty()) {
+        body["tracker_owner"] = serde_json::Value::String(to);
+    }
+    if let Some(tr) = tracker_repo.filter(|t| !t.is_empty()) {
+        body["tracker_repo"] = serde_json::Value::String(tr);
+    }
+    if let Some(tk) = tracker_token.filter(|t| !t.is_empty()) {
+        body["tracker_token"] = serde_json::Value::String(tk);
+    }
+
+    let resp = super::agent_client::agent_request(reqwest::Method::POST, "/api/v1/repositories")
+        .await?
+        .json(&body)
+        .send()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))?;
+
+    if !resp.status().is_success() {
+        let body = resp.text().await.unwrap_or_default();
+        return Err(ServerFnError::new(format!(
+            "Failed to add repository: {body}"
+        )));
+    }
+
+    Ok(())
+}
+
+#[server]
+pub async fn update_repository(
+    repo_id: String,
+    name: Option<String>,
+    default_branch: Option<String>,
+    auth_token: Option<String>,
+    auth_username: Option<String>,
+    tracker_type: Option<String>,
+    tracker_owner: Option<String>,
+    tracker_repo: Option<String>,
+    tracker_token: Option<String>,
+    scan_schedule: Option<String>,
+) -> Result<(), ServerFnError> {
+    let mut body = serde_json::Map::new();
+    if let Some(v) = name.filter(|s| !s.is_empty()) {
+        body.insert("name".into(), serde_json::Value::String(v));
+    }
+    if let Some(v) = default_branch.filter(|s| !s.is_empty()) {
+        body.insert("default_branch".into(), serde_json::Value::String(v));
+    }
+    if let Some(v) = auth_token {
+        body.insert("auth_token".into(), serde_json::Value::String(v));
+    }
+    if let Some(v) = auth_username {
+        body.insert("auth_username".into(), serde_json::Value::String(v));
+    }
+    if let Some(v) = tracker_type {
+        body.insert("tracker_type".into(), serde_json::Value::String(v));
+    }
+    if let Some(v) = tracker_owner {
+        body.insert("tracker_owner".into(), serde_json::Value::String(v));
+    }
+    if let Some(v) = tracker_repo {
+        body.insert("tracker_repo".into(), serde_json::Value::String(v));
+    }
+    if let Some(v) = tracker_token {
+        body.insert("tracker_token".into(), serde_json::Value::String(v));
+    }
+    if let Some(v) = scan_schedule {
+        body.insert("scan_schedule".into(), serde_json::Value::String(v));
+    }
+
+    let resp = super::agent_client::agent_request(
+        reqwest::Method::PATCH,
+        &format!("/api/v1/repositories/{repo_id}"),
+    )
+    .await?
+    .json(&body)
+    .send()
+    .await
+    .map_err(|e| ServerFnError::new(e.to_string()))?;
+
+    if !resp.status().is_success() {
+        let text = resp.text().await.unwrap_or_default();
+        return Err(ServerFnError::new(format!(
+            "Failed to update repository: {text}"
+        )));
+    }
+
+    Ok(())
+}
 
-/// Fetch the agent's SSH deploy public key.
 #[server]
 pub async fn fetch_ssh_public_key() -> Result<String, ServerFnError> {
     let resp = super::agent_client::agent_get("/api/v1/settings/ssh-public-key")
@@ -28,3 +163,86 @@ pub async fn fetch_ssh_public_key() -> Result<String, ServerFnError> {
         .unwrap_or("")
         .to_string())
 }
+
+#[server]
+pub async fn delete_repository(repo_id: String) -> Result<(), ServerFnError> {
+    let resp = super::agent_client::agent_request(
+        reqwest::Method::DELETE,
+        &format!("/api/v1/repositories/{repo_id}"),
+    )
+    .await?
+    .send()
+    .await
+    .map_err(|e| ServerFnError::new(e.to_string()))?;
+
+    if !resp.status().is_success() {
+        let body = resp.text().await.unwrap_or_default();
+        return Err(ServerFnError::new(format!(
+            "Failed to delete repository: {body}"
+        )));
+    }
+
+    Ok(())
+}
+
+#[server]
+pub async fn trigger_repo_scan(repo_id: String) -> Result<(), ServerFnError> {
+    super::agent_client::agent_request(
+        reqwest::Method::POST,
+        &format!("/api/v1/repositories/{repo_id}/scan"),
+    )
+    .await?
+    .send()
+    .await
+    .map_err(|e| ServerFnError::new(e.to_string()))?;
+
+    Ok(())
+}
+
+#[derive(Debug, Clone, Serialize, Deserialize, Default)]
+pub struct WebhookConfigResponse {
+    pub webhook_secret: Option<String>,
+    pub tracker_type: String,
+}
+
+#[server]
+pub async fn fetch_webhook_config(repo_id: String) -> Result<WebhookConfigResponse, ServerFnError> {
+    let resp =
+        super::agent_client::agent_get(&format!("/api/v1/repositories/{repo_id}/webhook-config"))
+            .await?
+            .send()
+            .await
+            .map_err(|e| ServerFnError::new(e.to_string()))?;
+    let body: WebhookConfigResponse = resp
+        .json()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))?;
+    Ok(body)
+}
+
+/// Check if a repository has any running scans
+#[server]
+pub async fn check_repo_scanning(repo_id: String) -> Result<bool, ServerFnError> {
+    let resp = super::agent_client::agent_get("/api/v1/scan-runs?page=1&limit=1")
+        .await?
+        .send()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))?;
+    let body: serde_json::Value = resp
+        .json()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))?;
+
+    // Check if the most recent scan for this repo is still running
+    if let Some(scans) = body.get("data").and_then(|d| d.as_array()) {
+        for scan in scans {
+            let scan_repo = scan.get("repo_id").and_then(|v| v.as_str()).unwrap_or("");
+            let status = scan.get("status").and_then(|v| v.as_str()).unwrap_or("");
+            if scan_repo == repo_id && status == "running" {
+                return Ok(true);
+            }
+        }
+    }
+
+    Ok(false)
+}

compliance-dashboard/src/infrastructure/server.rs

@@ -1,4 +1,3 @@
-use axum::extract::DefaultBodyLimit;
 use axum::routing::{get, post};
 use axum::{middleware, Extension};
 use dioxus::prelude::*;
@@ -67,9 +66,6 @@ pub fn server_start(app: fn() -> Element) -> Result<(), DashboardError> {
                 // Webhook proxy: forward to agent (no auth required)
                 .route("/webhook/{platform}/{repo_id}", post(webhook_proxy))
                 .serve_dioxus_application(ServeConfig::new(), app)
-                // Allow large artifact uploads through the upload server function
-                // (PLC .projectarchive, firmware, mobile) — default is 2 MiB.
-                .layer(DefaultBodyLimit::max(512 * 1024 * 1024))
                 .layer(Extension(PendingOAuthStore::default()))
                 .layer(middleware::from_fn(require_auth))
                 .layer(Extension(server_state))

compliance-dashboard/src/pages/chat_index.rs

@@ -2,11 +2,11 @@ use dioxus::prelude::*;
 
 use crate::app::Route;
 use crate::components::page_header::PageHeader;
-use crate::infrastructure::onboarding::fetch_targets;
+use crate::infrastructure::repositories::fetch_repositories;
 
 #[component]
 pub fn ChatIndexPage() -> Element {
-    let repos = use_resource(|| async { fetch_targets().await.ok() });
+    let repos = use_resource(|| async { fetch_repositories(1).await.ok() });
 
     rsx! {
         PageHeader {
@@ -28,32 +28,10 @@ pub fn ChatIndexPage() -> Element {
                         div { class: "graph-index-grid",
                             for repo in repo_list {
                                 {
-                                    let repo_id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                    let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
-                                    let url = repo
-                                        .get("artifacts")
-                                        .and_then(|a| a.as_array())
-                                        .and_then(|arr| {
-                                            arr.iter().find(|a| {
-                                                a.get("kind").and_then(|k| k.as_str()) == Some("git_repo")
-                                            })
-                                        })
-                                        .and_then(|a| a.get("source_ref"))
-                                        .and_then(|s| s.as_str())
-                                        .unwrap_or_default()
-                                        .to_string();
-                                    let branch = repo
-                                        .get("artifacts")
-                                        .and_then(|a| a.as_array())
-                                        .and_then(|arr| {
-                                            arr.iter().find_map(|a| {
-                                                a.get("git")
-                                                    .and_then(|g| g.get("default_branch"))
-                                                    .and_then(|b| b.as_str())
-                                            })
-                                        })
-                                        .unwrap_or("main")
-                                        .to_string();
+                                    let repo_id = repo.id.map(|id| id.to_hex()).unwrap_or_default();
+                                    let name = repo.name.clone();
+                                    let url = repo.git_url.clone();
+                                    let branch = repo.default_branch.clone();
                                     rsx! {
                                         Link {
                                             to: Route::ChatPage { repo_id },

compliance-dashboard/src/pages/findings.rs

@@ -20,7 +20,7 @@ pub fn FindingsPage() -> Element {
     let mut selected_ids = use_signal(Vec::<String>::new);
 
     let repos = use_resource(|| async {
-        crate::infrastructure::onboarding::fetch_targets()
+        crate::infrastructure::repositories::fetch_repositories(1)
             .await
             .ok()
     });
@@ -86,14 +86,14 @@ pub fn FindingsPage() -> Element {
             }
             select {
                 onchange: move |e| { repo_filter.set(e.value()); page.set(1); },
-                option { value: "", "All Targets" }
+                option { value: "", "All Repositories" }
                 {
                     match &*repos.read() {
                         Some(Some(resp)) => rsx! {
-                            for t in &resp.data {
+                            for repo in &resp.data {
                                 {
-                                    let id = t.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                    let name = t.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
+                                    let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
+                                    let name = repo.name.clone();
                                     rsx! {
                                         option { value: "{id}", "{name}" }
                                     }

compliance-dashboard/src/pages/graph_index.rs

@@ -2,11 +2,11 @@ use dioxus::prelude::*;
 
 use crate::app::Route;
 use crate::components::page_header::PageHeader;
-use crate::infrastructure::onboarding::fetch_targets;
+use crate::infrastructure::repositories::fetch_repositories;
 
 #[component]
 pub fn GraphIndexPage() -> Element {
-    let repos = use_resource(|| async { fetch_targets().await.ok() });
+    let repos = use_resource(|| async { fetch_repositories(1).await.ok() });
 
     rsx! {
         PageHeader {
@@ -28,34 +28,27 @@ pub fn GraphIndexPage() -> Element {
                         div { class: "graph-index-grid",
                             for repo in repo_list {
                                 {
-                                    let repo_id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                    let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
-                                    let url = repo
-                                        .get("artifacts")
-                                        .and_then(|a| a.as_array())
-                                        .and_then(|arr| {
-                                            arr.iter().find(|a| {
-                                                a.get("kind").and_then(|k| k.as_str()) == Some("git_repo")
-                                            })
-                                        })
-                                        .and_then(|a| a.get("source_ref"))
-                                        .and_then(|s| s.as_str())
-                                        .unwrap_or_default()
-                                        .to_string();
-                                    let branch = repo
-                                        .get("artifacts")
-                                        .and_then(|a| a.as_array())
-                                        .and_then(|arr| {
-                                            arr.iter().find_map(|a| {
-                                                a.get("git")
-                                                    .and_then(|g| g.get("default_branch"))
-                                                    .and_then(|b| b.as_str())
-                                            })
-                                        })
-                                        .unwrap_or("main")
-                                        .to_string();
-                                    let findings = repo.get("findings_count").and_then(|n| n.as_u64()).unwrap_or(0);
+                                    let repo_id = repo.id.map(|id| id.to_hex()).unwrap_or_default();
+                                    let name = repo.name.clone();
+                                    let url = repo.git_url.clone();
+                                    let branch = repo.default_branch.clone();
+                                    let findings = repo.findings_count;
                                     let findings_label = if findings != 1 { format!("{findings} findings") } else { "1 finding".to_string() };
+                                    let updated = {
+                                        let now = chrono::Utc::now();
+                                        let diff = now.signed_duration_since(repo.updated_at);
+                                        if diff.num_minutes() < 1 {
+                                            "just now".to_string()
+                                        } else if diff.num_hours() < 1 {
+                                            format!("{}m ago", diff.num_minutes())
+                                        } else if diff.num_days() < 1 {
+                                            format!("{}h ago", diff.num_hours())
+                                        } else if diff.num_days() < 30 {
+                                            format!("{}d ago", diff.num_days())
+                                        } else {
+                                            repo.updated_at.format("%Y-%m-%d").to_string()
+                                        }
+                                    };
                                     rsx! {
                                         Link {
                                             to: Route::GraphExplorerPage { repo_id },
@@ -74,6 +67,9 @@ pub fn GraphIndexPage() -> Element {
                                                 span { class: "graph-repo-card-tag graph-repo-card-tag-findings",
                                                     "{findings_label}"
                                                 }
+                                                span { class: "graph-repo-card-tag",
+                                                    "Updated {updated}"
+                                                }
                                             }
                                         }
                                     }

compliance-dashboard/src/pages/mod.rs

@@ -12,12 +12,11 @@ pub mod impact_analysis;
 pub mod issues;
 pub mod mcp_servers;
 pub mod mcp_tokens;
-pub mod onboarding;
 pub mod overview;
 pub mod pentest_dashboard;
 pub mod pentest_session;
+pub mod repositories;
 pub mod sbom;
-pub mod targets;
 
 pub use chat::ChatPage;
 pub use chat_index::ChatIndexPage;
@@ -33,9 +32,8 @@ pub use impact_analysis::ImpactAnalysisPage;
 pub use issues::IssuesPage;
 pub use mcp_servers::McpServersPage;
 pub use mcp_tokens::McpTokensPage;
-pub use onboarding::OnboardingPage;
 pub use overview::OverviewPage;
 pub use pentest_dashboard::PentestDashboardPage;
 pub use pentest_session::PentestSessionPage;
+pub use repositories::RepositoriesPage;
 pub use sbom::SbomPage;
-pub use targets::TargetsPage;

compliance-dashboard/src/pages/onboarding.rs

@@ -1,656 +0,0 @@
-use dioxus::prelude::*;
-
-use crate::components::page_header::PageHeader;
-use crate::infrastructure::onboarding::{
-    create_target, detect_target, enable_target_scans, fetch_applicable_scans, trigger_target_scan,
-    upload_target_artifact, validate_artifact_ref, validate_target_name, ArtifactInputDto,
-};
-
-/// (value, label, one-line description) for the 9 target families.
-const TARGET_TYPES: &[(&str, &str, &str)] = &[
-    ("web_app", "Web Application", "Front end + server"),
-    ("backend_service", "Backend / API", "REST, GraphQL, gRPC"),
-    ("desktop_app", "Desktop App", "Windows / macOS / Linux"),
-    ("android_app", "Android App", "APK / AAB"),
-    ("ios_app", "iOS App", "IPA"),
-    (
-        "firmware_bare_metal",
-        "Firmware — bare metal",
-        "No operating system",
-    ),
-    ("firmware_rtos", "Firmware — RTOS", "Zephyr, FreeRTOS, ..."),
-    (
-        "embedded_linux_yocto",
-        "Embedded Linux / Yocto",
-        "BSP + image",
-    ),
-    ("plc_sps", "PLC / SPS", "IEC 61131-3"),
-];
-
-/// (value, label) for the artifact kinds a user can attach.
-const ARTIFACT_KINDS: &[(&str, &str)] = &[
-    ("git_repo", "Git repository"),
-    ("source_archive", "Source archive (zip)"),
-    ("firmware_image", "Firmware image"),
-    ("mobile_package", "Mobile package (APK/IPA)"),
-    ("container_image", "Container image"),
-    ("live_url", "Live URL"),
-    ("plc_project", "PLC project"),
-    ("plaintext_description", "Description (text)"),
-];
-
-const STEP_LABELS: &[&str] = &["Target type", "Artifacts", "Review", "Done"];
-
-/// Artifact kinds provided as an uploaded file (rather than a URL/text ref).
-fn is_file_kind(kind: &str) -> bool {
-    matches!(
-        kind,
-        "plc_project" | "firmware_image" | "source_archive" | "mobile_package"
-    )
-}
-
-/// A file artifact staged in the wizard, uploaded after the target is created.
-#[derive(Clone, PartialEq)]
-struct PendingFile {
-    kind: String,
-    plc_format: Option<String>,
-    filename: String,
-    bytes: Vec<u8>,
-}
-
-/// One row in the applicable-scans list on the success step.
-#[component]
-fn ScanRow(scan: serde_json::Value) -> Element {
-    let name = scan
-        .get("scan")
-        .and_then(|v| v.as_str())
-        .unwrap_or("?")
-        .to_string();
-    let rationale = scan
-        .get("rationale")
-        .and_then(|v| v.as_str())
-        .unwrap_or("")
-        .to_string();
-    let blocked = scan
-        .get("blocked_reason")
-        .and_then(|v| v.as_str())
-        .map(String::from);
-    let default_on = scan
-        .get("default_on")
-        .and_then(|v| v.as_bool())
-        .unwrap_or(false);
-    let badge_class = if blocked.is_some() {
-        "badge badge-info"
-    } else if default_on {
-        "badge badge-success"
-    } else {
-        "badge"
-    };
-    rsx! {
-        div { style: "display: flex; gap: 8px; align-items: center; padding: 6px 0;",
-            span { class: "{badge_class}", "{name}" }
-            span { style: "opacity: 0.8;", "{rationale}" }
-            if let Some(b) = blocked {
-                span { style: "opacity: 0.6; font-style: italic;", "— {b}" }
-            }
-        }
-    }
-}
-
-fn kind_label(kind: &str) -> &str {
-    ARTIFACT_KINDS
-        .iter()
-        .find(|(v, _)| *v == kind)
-        .map(|(_, l)| *l)
-        .unwrap_or(kind)
-}
-
-fn type_label(value: &str) -> &str {
-    TARGET_TYPES
-        .iter()
-        .find(|(v, _, _)| *v == value)
-        .map(|(_, l, _)| *l)
-        .unwrap_or(value)
-}
-
-#[component]
-pub fn OnboardingPage() -> Element {
-    let mut step = use_signal(|| 0usize);
-    let mut name = use_signal(String::new);
-    let mut target_type = use_signal(String::new);
-    let mut description = use_signal(String::new);
-    let mut artifacts = use_signal(Vec::<ArtifactInputDto>::new);
-
-    // "Add artifact" mini-form.
-    let mut new_kind = use_signal(|| "git_repo".to_string());
-    let mut new_source = use_signal(String::new);
-    let mut new_branch = use_signal(|| "main".to_string());
-    // File-upload artifacts (PLC project, firmware image, ...).
-    let mut new_plc_format = use_signal(|| "plcopen_xml".to_string());
-    let mut new_file = use_signal(|| Option::<(String, Vec<u8>)>::None);
-    let mut pending_files = use_signal(Vec::<PendingFile>::new);
-
-    // Create + result state.
-    let mut creating = use_signal(|| false);
-    let mut error = use_signal(|| Option::<String>::None);
-    let mut scans = use_signal(Vec::<serde_json::Value>::new);
-    let mut suggested = use_signal(|| Option::<String>::None);
-    let mut created_id = use_signal(|| Option::<String>::None);
-    let mut scan_msg = use_signal(|| Option::<String>::None);
-    // Opt-in scans (default-off but unblocked) the user ticks to enable before
-    // running — stored as serde scan-type names (lowercase, no underscores).
-    let mut enabled_extra = use_signal(Vec::<String>::new);
-
-    let step_now = step();
-    let name_error = validate_target_name(&name());
-    let can_advance_type = name_error.is_none() && !target_type().trim().is_empty();
-    let has_artifacts = !artifacts().is_empty() || !pending_files().is_empty();
-    // Opt-in scans: applicable + unblocked, but default-off (e.g. the ICS probe).
-    // The user ticks these to enable them before the first run. Each entry is
-    // (display name for the label, serde scan-type name for the enable call —
-    // lowercase, no underscores, matching ScanType's rename_all = "lowercase").
-    let optin_scans: Vec<(String, String)> = scans()
-        .iter()
-        .filter_map(|s| {
-            let unblocked = s.get("blocked_reason").and_then(|v| v.as_str()).is_none();
-            let default_on = s
-                .get("default_on")
-                .and_then(|v| v.as_bool())
-                .unwrap_or(false);
-            if unblocked && !default_on {
-                let display = s.get("scan").and_then(|v| v.as_str())?.to_string();
-                let serde_name = display.replace('_', "");
-                Some((display, serde_name))
-            } else {
-                None
-            }
-        })
-        .collect();
-    // Live validation of the artifact reference being typed (empty = no error yet).
-    let new_source_error = if new_source().is_empty() {
-        None
-    } else {
-        validate_artifact_ref(&new_kind(), &new_source())
-    };
-
-    rsx! {
-        PageHeader {
-            title: "Onboard a target",
-            description: "Add a target, attach its artifacts, and see which scans apply.",
-        }
-
-        // Stepper.
-        div { class: "wizard-steps",
-            for (i, label) in STEP_LABELS.iter().enumerate() {
-                div {
-                    class: if i == step_now { "wizard-step wizard-step-active" } else { "wizard-step" },
-                    span { class: "wizard-step-dot", "{i + 1}" }
-                    span { class: "wizard-step-label", "{label}" }
-                }
-            }
-        }
-
-        if let Some(err) = error() {
-            div { class: "card", style: "border-color: var(--danger, #d33); margin-bottom: 12px;",
-                div { class: "card-header", "Error" }
-                div { style: "padding: 12px;", "{err}" }
-            }
-        }
-
-        div { class: "card",
-            // ---- Step 0: target type + name ----
-            if step_now == 0 {
-                div { class: "card-header", "What kind of software is this?" }
-                div { style: "padding: 16px;",
-                    div { class: "form-group",
-                        label { "Name" }
-                        input {
-                            r#type: "text",
-                            placeholder: "acme-web",
-                            value: "{name}",
-                            oninput: move |e| name.set(e.value()),
-                        }
-                        if !name().is_empty() {
-                            if let Some(err) = name_error.clone() {
-                                div { style: "color: var(--danger, #d33); font-size: 0.85em; margin-top: 4px;", "{err}" }
-                            }
-                        }
-                    }
-                    div {
-                        style: "display: grid; grid-template-columns: repeat(auto-fill, minmax(200px, 1fr)); gap: 12px; margin-top: 12px;",
-                        for (value, tlabel, tdesc) in TARGET_TYPES.iter().copied() {
-                            div {
-                                class: "card",
-                                style: if target_type() == value {
-                                    "padding: 12px; cursor: pointer; border: 2px solid var(--accent, #3b82f6);"
-                                } else {
-                                    "padding: 12px; cursor: pointer;"
-                                },
-                                onclick: move |_| target_type.set(value.to_string()),
-                                div { style: "font-weight: 600;", "{tlabel}" }
-                                div { style: "font-size: 0.85em; opacity: 0.7;", "{tdesc}" }
-                            }
-                        }
-                    }
-                }
-            }
-
-            // ---- Step 1: artifacts ----
-            if step_now == 1 {
-                div { class: "card-header", "Attach artifacts" }
-                if target_type() == "plc_sps" {
-                    div {
-                        style: "margin: 12px 16px 0; padding: 12px 14px; border-left: 3px solid var(--accent, #3b82f6); background: var(--surface-2, rgba(59,130,246,0.08)); font-size: 0.88em; line-height: 1.55;",
-                        div { style: "font-weight: 600; margin-bottom: 4px;", "CODESYS / PLC projects" }
-                        "Attach a "
-                        b { "PLC project" }
-                        " (PLCopen XML / ST, or a .projectarchive), or a "
-                        b { "Git repository" }
-                        " of exported source — every scan is then just a pull."
-                        ul { style: "margin: 6px 0 0; padding-left: 18px;",
-                            li {
-                                b { "Control-logic SAST" }
-                                " — commit "
-                                b { "PLCopen XML exports" }
-                                " (Project → Export PLCopenXML) or raw .st; ST and graphical FBD/LD are both analyzed."
-                            }
-                            li {
-                                b { "Library + runtime SBOM" }
-                                " — include the "
-                                b { ".projectarchive" }
-                                "; PLCopen XML alone carries no libraries."
-                            }
-                            li {
-                                "Avoid committing only the binary "
-                                code { ".project" }
-                                " — it can't be parsed and doesn't diff."
-                            }
-                        }
-                    }
-                }
-                div { style: "padding: 16px;",
-                    div { style: "display: flex; gap: 8px; flex-wrap: wrap; align-items: flex-end;",
-                        div { class: "form-group", style: "margin: 0;",
-                            label { "Kind" }
-                            select {
-                                value: "{new_kind}",
-                                oninput: move |e| new_kind.set(e.value()),
-                                for (value, klabel) in ARTIFACT_KINDS.iter().copied() {
-                                    option { value: "{value}", "{klabel}" }
-                                }
-                            }
-                        }
-                        if is_file_kind(&new_kind()) {
-                            div { class: "form-group", style: "margin: 0; flex: 1; min-width: 240px;",
-                                label { "File" }
-                                input {
-                                    r#type: "file",
-                                    onchange: move |evt| {
-                                        let Some(file) = evt.files().into_iter().next() else { return; };
-                                        let name = file.name();
-                                        // Auto-detect the PLC format from the file extension.
-                                        let lname = name.to_ascii_lowercase();
-                                        if lname.ends_with(".projectarchive") || lname.ends_with(".project") {
-                                            new_plc_format.set("project_archive".to_string());
-                                        } else if lname.ends_with(".xml") || lname.ends_with(".plcopen") {
-                                            new_plc_format.set("plcopen_xml".to_string());
-                                        } else if lname.ends_with(".st") || lname.ends_with(".exp") || lname.ends_with(".scl") {
-                                            new_plc_format.set("structured_text".to_string());
-                                        }
-                                        spawn(async move {
-                                            if let Ok(bytes) = file.read_bytes().await {
-                                                new_file.set(Some((name, bytes.to_vec())));
-                                            }
-                                        });
-                                    },
-                                }
-                            }
-                            if new_kind() == "plc_project" {
-                                div { class: "form-group", style: "margin: 0;",
-                                    label { "Format" }
-                                    select {
-                                        value: "{new_plc_format}",
-                                        oninput: move |e| new_plc_format.set(e.value()),
-                                        option {
-                                            value: "plcopen_xml",
-                                            selected: new_plc_format() == "plcopen_xml",
-                                            "PLCopen XML",
-                                        }
-                                        option {
-                                            value: "structured_text",
-                                            selected: new_plc_format() == "structured_text",
-                                            "Structured Text",
-                                        }
-                                        option {
-                                            value: "project_archive",
-                                            selected: new_plc_format() == "project_archive",
-                                            "Project archive (.projectarchive)",
-                                        }
-                                    }
-                                }
-                            }
-                            button {
-                                class: "btn btn-secondary",
-                                disabled: new_file().is_none(),
-                                onclick: move |_| {
-                                    if let Some((fname, data)) = new_file() {
-                                        let kind = new_kind();
-                                        let plc_format = if kind == "plc_project" {
-                                            Some(new_plc_format())
-                                        } else {
-                                            None
-                                        };
-                                        pending_files.write().push(PendingFile {
-                                            kind,
-                                            plc_format,
-                                            filename: fname,
-                                            bytes: data,
-                                        });
-                                        new_file.set(None);
-                                    }
-                                },
-                                "+ Add file"
-                            }
-                        } else {
-                            div { class: "form-group", style: "margin: 0; flex: 1; min-width: 240px;",
-                                label { "Reference (URL / path / text)" }
-                                input {
-                                    r#type: "text",
-                                    placeholder: "https://git.example.com/acme.git",
-                                    value: "{new_source}",
-                                    oninput: move |e| new_source.set(e.value()),
-                                }
-                            }
-                            if new_kind() == "git_repo" {
-                                div { class: "form-group", style: "margin: 0;",
-                                    label { "Branch" }
-                                    input {
-                                        r#type: "text",
-                                        value: "{new_branch}",
-                                        oninput: move |e| new_branch.set(e.value()),
-                                    }
-                                }
-                            }
-                            button {
-                                class: "btn btn-secondary",
-                                disabled: new_source().trim().is_empty() || new_source_error.is_some(),
-                                onclick: move |_| {
-                                    let kind = new_kind();
-                                    if !new_source().trim().is_empty()
-                                        && validate_artifact_ref(&kind, &new_source()).is_none()
-                                    {
-                                        let branch = if kind == "git_repo" { Some(new_branch()) } else { None };
-                                        artifacts.write().push(ArtifactInputDto {
-                                            kind,
-                                            source_ref: new_source(),
-                                            branch,
-                                            plc_format: None,
-                                        });
-                                        new_source.set(String::new());
-                                    }
-                                },
-                                "+ Add"
-                            }
-                        }
-                    }
-                    if is_file_kind(&new_kind()) {
-                        if let Some((fname, data)) = new_file() {
-                            div { style: "font-size: 0.85em; opacity: 0.7; margin-top: 6px;",
-                                "Selected: {fname} ({data.len()} bytes)"
-                            }
-                        }
-                    } else if let Some(err) = new_source_error.clone() {
-                        div { style: "color: var(--danger, #d33); font-size: 0.85em; margin-top: 6px;", "{err}" }
-                    }
-                    // Staged file artifacts (uploaded after the target is created).
-                    for (i, pf) in pending_files().iter().enumerate() {
-                        div {
-                            style: "display: flex; justify-content: space-between; align-items: center; padding: 8px 12px; border: 1px solid var(--border, #333); border-radius: 6px; margin-top: 6px;",
-                            span {
-                                span { style: "opacity: 0.7;", "{kind_label(&pf.kind)} (file): " }
-                                "{pf.filename} ({pf.bytes.len()} bytes)"
-                            }
-                            button {
-                                class: "btn btn-ghost-danger btn-sm",
-                                onclick: move |_| { pending_files.write().remove(i); },
-                                "Remove"
-                            }
-                        }
-                    }
-
-                    div { style: "margin-top: 16px;",
-                        if has_artifacts {
-                            for (i, a) in artifacts().iter().enumerate() {
-                                div {
-                                    style: "display: flex; justify-content: space-between; align-items: center; padding: 8px 12px; border: 1px solid var(--border, #333); border-radius: 6px; margin-bottom: 6px;",
-                                    span {
-                                        span { style: "opacity: 0.7;", "{kind_label(&a.kind)}: " }
-                                        "{a.source_ref}"
-                                    }
-                                    button {
-                                        class: "btn btn-ghost-danger btn-sm",
-                                        onclick: move |_| { artifacts.write().remove(i); },
-                                        "Remove"
-                                    }
-                                }
-                            }
-                        } else {
-                            div { style: "opacity: 0.6;", "No artifacts yet. Add at least one." }
-                        }
-                    }
-                }
-            }
-
-            // ---- Step 2: review + create ----
-            if step_now == 2 {
-                div { class: "card-header", "Review" }
-                div { style: "padding: 16px;",
-                    div { class: "wizard-summary",
-                        div { strong { "Name: " } "{name()}" }
-                        div { strong { "Type: " } "{type_label(&target_type())}" }
-                        div { strong { "Artifacts:" } }
-                        ul {
-                            for a in artifacts() {
-                                li { "{kind_label(&a.kind)}: {a.source_ref}" }
-                            }
-                        }
-                    }
-                    div { style: "margin-top: 12px; opacity: 0.7; font-size: 0.9em;",
-                        "The applicable scans (SAST / DAST / firmware / PLC) are shown after the target is created."
-                    }
-                }
-            }
-
-            // ---- Step 3: created ----
-            if step_now == 3 {
-                div { class: "card-header", "Target onboarded" }
-                div { style: "padding: 16px;",
-                    p {
-                        strong { "{name()}" }
-                        " was created."
-                        if let Some(s) = suggested() {
-                            span { " Suggested type from detection: " strong { "{type_label(&s)}" } "." }
-                        }
-                    }
-                    h4 { style: "margin-top: 16px;", "Applicable scans" }
-                    if scans().is_empty() {
-                        div { style: "opacity: 0.6;", "No scans available (no code / URL / firmware artifact present)." }
-                    } else {
-                        for s in scans() {
-                            ScanRow { scan: s }
-                        }
-                    }
-                    if !optin_scans.is_empty() {
-                        div { style: "margin-top: 12px; padding: 10px; border: 1px dashed var(--border, #ccc); border-radius: 6px;",
-                            div { style: "font-weight: 600; margin-bottom: 6px;", "Enable opt-in scans" }
-                            div { style: "opacity: 0.7; font-size: 0.85em; margin-bottom: 8px;",
-                                "These are applicable but off by default (they touch a live device). Tick to enable before running."
-                            }
-                            for pair in optin_scans.clone() {
-                                {
-                                    let (display, serde_name) = pair;
-                                    let cb_name = serde_name.clone();
-                                    rsx! {
-                                        label {
-                                            style: "display: flex; gap: 6px; align-items: center; margin-top: 4px;",
-                                            input {
-                                                r#type: "checkbox",
-                                                checked: enabled_extra().contains(&serde_name),
-                                                onchange: move |_| {
-                                                    let mut v = enabled_extra();
-                                                    if let Some(p) = v.iter().position(|x| x == &cb_name) {
-                                                        v.remove(p);
-                                                    } else {
-                                                        v.push(cb_name.clone());
-                                                    }
-                                                    enabled_extra.set(v);
-                                                },
-                                            }
-                                            "Enable {display}"
-                                        }
-                                    }
-                                }
-                            }
-                        }
-                    }
-                    if let Some(msg) = scan_msg() {
-                        div { style: "margin-top: 8px; color: var(--success, #2a2);", "{msg}" }
-                    }
-                    div { style: "margin-top: 16px; display: flex; gap: 8px;",
-                        button {
-                            class: "btn btn-primary",
-                            onclick: move |_| {
-                                if let Some(id) = created_id() {
-                                    let extra = enabled_extra();
-                                    scan_msg.set(Some("Scan triggered...".to_string()));
-                                    spawn(async move {
-                                        // Persist any ticked opt-in scans first, so the
-                                        // agent's build_scan_plan includes them this run.
-                                        if !extra.is_empty() {
-                                            if let Err(e) =
-                                                enable_target_scans(id.clone(), extra).await
-                                            {
-                                                scan_msg.set(Some(format!(
-                                                    "Failed to enable opt-in scans: {e}"
-                                                )));
-                                                return;
-                                            }
-                                        }
-                                        match trigger_target_scan(id).await {
-                                            Ok(_) => scan_msg.set(Some(
-                                                "Scan started — findings will appear as it runs.".to_string(),
-                                            )),
-                                            Err(e) => scan_msg.set(Some(format!("Failed to start scan: {e}"))),
-                                        }
-                                    });
-                                }
-                            },
-                            "Run scan"
-                        }
-                        button {
-                            class: "btn btn-secondary",
-                            onclick: move |_| {
-                                step.set(0);
-                                name.set(String::new());
-                                target_type.set(String::new());
-                                description.set(String::new());
-                                artifacts.write().clear();
-                                pending_files.write().clear();
-                                new_file.set(None);
-                                scans.write().clear();
-                                suggested.set(None);
-                                created_id.set(None);
-                                scan_msg.set(None);
-                                error.set(None);
-                            },
-                            "Onboard another"
-                        }
-                    }
-                }
-            }
-        }
-
-        // ---- Footer navigation ----
-        if step_now < 3 {
-            div { style: "display: flex; justify-content: space-between; margin-top: 16px;",
-                button {
-                    class: "btn btn-back",
-                    disabled: step_now == 0,
-                    onclick: move |_| { if step() > 0 { step.set(step() - 1); } },
-                    "Back"
-                }
-                if step_now < 2 {
-                    button {
-                        class: "btn btn-primary",
-                        disabled: (step_now == 0 && !can_advance_type) || (step_now == 1 && !has_artifacts),
-                        onclick: move |_| step.set(step() + 1),
-                        "Next"
-                    }
-                } else {
-                    button {
-                        class: "btn btn-primary",
-                        disabled: creating(),
-                        onclick: move |_| {
-                            let n = name();
-                            let tt = target_type();
-                            let desc = description();
-                            let arts = artifacts();
-                            let files = pending_files();
-                            let d = if desc.trim().is_empty() { None } else { Some(desc) };
-                            creating.set(true);
-                            error.set(None);
-                            spawn(async move {
-                                match create_target(n, tt, d, arts).await {
-                                    Ok(resp) => {
-                                        let id = resp
-                                            .data
-                                            .get("_id")
-                                            .and_then(|o| o.get("$oid"))
-                                            .and_then(|s| s.as_str())
-                                            .map(String::from);
-                                        if let Some(id) = id {
-                                            created_id.set(Some(id.clone()));
-                                            // Upload staged file artifacts now that the target exists.
-                                            for pf in files {
-                                                let fname = pf.filename.clone();
-                                                if let Err(e) = upload_target_artifact(
-                                                    id.clone(),
-                                                    pf.kind,
-                                                    pf.plc_format,
-                                                    pf.filename,
-                                                    pf.bytes,
-                                                )
-                                                .await
-                                                {
-                                                    error.set(Some(format!(
-                                                        "Upload failed for {fname}: {e}"
-                                                    )));
-                                                }
-                                            }
-                                            if let Ok(sc) = fetch_applicable_scans(id.clone()).await {
-                                                scans.set(sc.data.scans);
-                                            }
-                                            if let Ok(det) = detect_target(id).await {
-                                                suggested.set(
-                                                    det.data
-                                                        .get("classification")
-                                                        .and_then(|c| c.get("suggested"))
-                                                        .and_then(|s| s.as_str())
-                                                        .map(String::from),
-                                                );
-                                            }
-                                        }
-                                        step.set(3);
-                                    }
-                                    Err(e) => error.set(Some(e.to_string())),
-                                }
-                                creating.set(false);
-                            });
-                        },
-                        if creating() { "Creating..." } else { "Create target" }
-                    }
-                }
-            }
-        }
-    }
-}

compliance-dashboard/src/pages/overview.rs

@@ -6,7 +6,7 @@ use crate::app::Route;
 use crate::components::page_header::PageHeader;
 use crate::components::stat_card::StatCard;
 use crate::infrastructure::mcp::fetch_mcp_servers;
-use crate::infrastructure::onboarding::fetch_targets;
+use crate::infrastructure::repositories::fetch_repositories;
 
 #[cfg(feature = "server")]
 use crate::infrastructure::stats::fetch_overview_stats;
@@ -26,7 +26,7 @@ pub fn OverviewPage() -> Element {
         }
     });
 
-    let repos = use_resource(|| async { fetch_targets().await.ok() });
+    let repos = use_resource(|| async { fetch_repositories(1).await.ok() });
     let mcp_servers = use_resource(|| async { fetch_mcp_servers().await.ok() });
 
     rsx! {
@@ -94,8 +94,8 @@ pub fn OverviewPage() -> Element {
                                         style: "display: grid; grid-template-columns: repeat(3, 1fr); gap: 1rem; padding: 1rem;",
                                         for repo in repo_list {
                                             {
-                                                let repo_id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                                let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
+                                                let repo_id = repo.id.map(|id| id.to_hex()).unwrap_or_default();
+                                                let name = repo.name.clone();
                                                 rsx! {
                                                     Link {
                                                         to: Route::ChatPage { repo_id },

compliance-dashboard/src/pages/repositories.rs

@@ -0,0 +1,657 @@
+use dioxus::prelude::*;
+use dioxus_free_icons::icons::bs_icons::*;
+#[allow(unused_imports)]
+use dioxus_free_icons::icons::bs_icons::{BsGear, BsPencil};
+use dioxus_free_icons::Icon;
+
+use crate::components::page_header::PageHeader;
+use crate::components::pagination::Pagination;
+use crate::components::toast::{ToastType, Toasts};
+use crate::pages::graph_explorer::GraphExplorerInline;
+
+async fn async_sleep_5s() {
+    #[cfg(feature = "web")]
+    {
+        gloo_timers::future::TimeoutFuture::new(5_000).await;
+    }
+    #[cfg(not(feature = "web"))]
+    {
+        tokio::time::sleep(std::time::Duration::from_secs(5)).await;
+    }
+}
+
+#[component]
+pub fn RepositoriesPage() -> Element {
+    let mut page = use_signal(|| 1u64);
+    let mut show_add_form = use_signal(|| false);
+    let mut name = use_signal(String::new);
+    let mut git_url = use_signal(String::new);
+    let mut branch = use_signal(|| "main".to_string());
+    let mut auth_token = use_signal(String::new);
+    let mut auth_username = use_signal(String::new);
+    let mut show_auth = use_signal(|| false);
+    let mut ssh_public_key = use_signal(String::new);
+    let mut show_tracker = use_signal(|| false);
+    let mut tracker_type_val = use_signal(String::new);
+    let mut tracker_owner_val = use_signal(String::new);
+    let mut tracker_repo_val = use_signal(String::new);
+    let mut tracker_token_val = use_signal(String::new);
+    let mut adding = use_signal(|| false);
+    let mut toasts = use_context::<Toasts>();
+    let mut confirm_delete = use_signal(|| Option::<(String, String)>::None); // (id, name)
+    let mut edit_repo_id = use_signal(|| Option::<String>::None);
+    let mut edit_name = use_signal(String::new);
+    let mut edit_branch = use_signal(String::new);
+    let mut edit_tracker_type = use_signal(String::new);
+    let mut edit_tracker_owner = use_signal(String::new);
+    let mut edit_tracker_repo = use_signal(String::new);
+    let mut edit_tracker_token = use_signal(String::new);
+    let mut edit_saving = use_signal(|| false);
+    let mut edit_webhook_secret = use_signal(|| Option::<String>::None);
+    let mut edit_webhook_tracker = use_signal(String::new);
+    let mut scanning_ids = use_signal(Vec::<String>::new);
+    let mut graph_repo_id = use_signal(|| Option::<String>::None);
+
+    let mut repos = use_resource(move || {
+        let p = page();
+        async move {
+            crate::infrastructure::repositories::fetch_repositories(p)
+                .await
+                .ok()
+        }
+    });
+
+    rsx! {
+        PageHeader {
+            title: "Repositories",
+            description: "Tracked git repositories",
+        }
+
+        div { style: "margin-bottom: 16px;",
+            button {
+                class: "btn btn-primary",
+                onclick: move |_| show_add_form.toggle(),
+                if show_add_form() { "Cancel" } else { "+ Add Repository" }
+            }
+        }
+
+        if show_add_form() {
+            div { class: "card",
+                div { class: "card-header", "Add Repository" }
+                div { class: "form-group",
+                    label { "Name" }
+                    input {
+                        r#type: "text",
+                        placeholder: "my-project",
+                        value: "{name}",
+                        oninput: move |e| name.set(e.value()),
+                    }
+                }
+                div { class: "form-group",
+                    label { "Git URL" }
+                    input {
+                        r#type: "text",
+                        placeholder: "https://github.com/org/repo.git  or  git@github.com:org/repo.git",
+                        value: "{git_url}",
+                        oninput: move |e| git_url.set(e.value()),
+                    }
+                }
+                div { class: "form-group",
+                    label { "Default Branch" }
+                    input {
+                        r#type: "text",
+                        placeholder: "main",
+                        value: "{branch}",
+                        oninput: move |e| branch.set(e.value()),
+                    }
+                }
+
+                // Private repo auth section
+                div { style: "margin-top: 8px;",
+                    button {
+                        class: "btn btn-ghost",
+                        style: "font-size: 12px; padding: 4px 8px;",
+                        onclick: move |_| {
+                            let opening = !show_auth();
+                            show_auth.toggle();
+                            if opening {
+                                // Fetch SSH key every time the section opens
+                                ssh_public_key.set(String::new());
+                                spawn(async move {
+                                    match crate::infrastructure::repositories::fetch_ssh_public_key().await {
+                                        Ok(key) => ssh_public_key.set(key),
+                                        Err(_) => ssh_public_key.set("(not available)".to_string()),
+                                    }
+                                });
+                            }
+                        },
+                        if show_auth() { "Hide auth options" } else { "Private repository?" }
+                    }
+                }
+
+                if show_auth() {
+                    div { class: "auth-section", style: "margin-top: 12px; padding: 12px; border: 1px solid var(--border-subtle); border-radius: 8px;",
+                        // SSH deploy key display
+                        div { style: "margin-bottom: 12px;",
+                            label { style: "font-size: 12px; color: var(--text-secondary);",
+                                "For SSH URLs: add this deploy key (read-only) to your repository"
+                            }
+                            div {
+                                class: "copyable",
+                                style: "margin-top: 4px; padding: 8px; background: var(--bg-secondary); border-radius: 4px;",
+                                code {
+                                    style: "font-size: 11px; word-break: break-all; user-select: all;",
+                                    if ssh_public_key().is_empty() {
+                                        "Loading..."
+                                    } else {
+                                        "{ssh_public_key}"
+                                    }
+                                }
+                                if !ssh_public_key().is_empty() {
+                                    crate::components::copy_button::CopyButton { value: ssh_public_key(), small: true }
+                                }
+                            }
+                        }
+
+                        // HTTPS auth fields
+                        p { style: "font-size: 12px; color: var(--text-secondary); margin-bottom: 8px;",
+                            "For HTTPS URLs: provide an access token (PAT) or username/password"
+                        }
+                        div { class: "form-group",
+                            label { "Auth Token / Password" }
+                            input {
+                                r#type: "password",
+                                placeholder: "ghp_xxxx or personal access token",
+                                value: "{auth_token}",
+                                oninput: move |e| auth_token.set(e.value()),
+                            }
+                        }
+                        div { class: "form-group",
+                            label { "Username (optional, defaults to x-access-token)" }
+                            input {
+                                r#type: "text",
+                                placeholder: "x-access-token",
+                                value: "{auth_username}",
+                                oninput: move |e| auth_username.set(e.value()),
+                            }
+                        }
+                    }
+                }
+
+                // Issue tracker config section
+                div { style: "margin-top: 8px;",
+                    button {
+                        class: "btn btn-ghost",
+                        style: "font-size: 12px; padding: 4px 8px;",
+                        onclick: move |_| show_tracker.toggle(),
+                        if show_tracker() { "Hide tracker options" } else { "Issue tracker?" }
+                    }
+                }
+
+                if show_tracker() {
+                    div { class: "auth-section", style: "margin-top: 12px; padding: 12px; border: 1px solid var(--border-subtle); border-radius: 8px;",
+                        p { style: "font-size: 12px; color: var(--text-secondary); margin-bottom: 8px;",
+                            "Configure an issue tracker to auto-create issues from findings"
+                        }
+                        div { class: "form-group",
+                            label { "Tracker Type" }
+                            select {
+                                value: "{tracker_type_val}",
+                                onchange: move |e| tracker_type_val.set(e.value()),
+                                option { value: "", "None" }
+                                option { value: "github", "GitHub" }
+                                option { value: "gitlab", "GitLab" }
+                                option { value: "gitea", "Gitea" }
+                                option { value: "jira", "Jira" }
+                            }
+                        }
+                        div { class: "form-group",
+                            label { "Owner / Namespace" }
+                            input {
+                                r#type: "text",
+                                placeholder: "org-name",
+                                value: "{tracker_owner_val}",
+                                oninput: move |e| tracker_owner_val.set(e.value()),
+                            }
+                        }
+                        div { class: "form-group",
+                            label { "Repository / Project" }
+                            input {
+                                r#type: "text",
+                                placeholder: "repo-name",
+                                value: "{tracker_repo_val}",
+                                oninput: move |e| tracker_repo_val.set(e.value()),
+                            }
+                        }
+                        div { class: "form-group",
+                            label { "Tracker Token (PAT)" }
+                            input {
+                                r#type: "password",
+                                placeholder: "ghp_xxxx / glpat-xxxx",
+                                value: "{tracker_token_val}",
+                                oninput: move |e| tracker_token_val.set(e.value()),
+                            }
+                        }
+                    }
+                }
+
+                button {
+                    class: "btn btn-primary",
+                    disabled: adding(),
+                    onclick: move |_| {
+                        let n = name();
+                        let u = git_url();
+                        let b = branch();
+                        let tok = {
+                            let v = auth_token();
+                            if v.is_empty() { None } else { Some(v) }
+                        };
+                        let usr = {
+                            let v = auth_username();
+                            if v.is_empty() { None } else { Some(v) }
+                        };
+                        let tt = { let v = tracker_type_val(); if v.is_empty() { None } else { Some(v) } };
+                        let t_owner = { let v = tracker_owner_val(); if v.is_empty() { None } else { Some(v) } };
+                        let t_repo = { let v = tracker_repo_val(); if v.is_empty() { None } else { Some(v) } };
+                        let t_tok = { let v = tracker_token_val(); if v.is_empty() { None } else { Some(v) } };
+                        adding.set(true);
+                        spawn(async move {
+                            match crate::infrastructure::repositories::add_repository(n, u, b, tok, usr, tt, t_owner, t_repo, t_tok).await {
+                                Ok(_) => {
+                                    toasts.push(ToastType::Success, "Repository added");
+                                    repos.restart();
+                                }
+                                Err(e) => toasts.push(ToastType::Error, e.to_string()),
+                            }
+                            adding.set(false);
+                        });
+                        show_add_form.set(false);
+                        show_auth.set(false);
+                        show_tracker.set(false);
+                        name.set(String::new());
+                        git_url.set(String::new());
+                        auth_token.set(String::new());
+                        auth_username.set(String::new());
+                        tracker_type_val.set(String::new());
+                        tracker_owner_val.set(String::new());
+                        tracker_repo_val.set(String::new());
+                        tracker_token_val.set(String::new());
+                    },
+                    if adding() { "Validating..." } else { "Add" }
+                }
+            }
+        }
+
+        // ── Delete confirmation dialog ──
+        if let Some((del_id, del_name)) = confirm_delete() {
+            div { class: "modal-overlay",
+                div { class: "modal-dialog",
+                    h3 { "Delete Repository" }
+                    p {
+                        "Are you sure you want to delete "
+                        strong { "{del_name}" }
+                        "?"
+                    }
+                    p { class: "modal-warning",
+                        "This will permanently remove all associated findings, SBOM entries, scan runs, graph data, embeddings, and CVE alerts."
+                    }
+                    div { class: "modal-actions",
+                        button {
+                            class: "btn btn-secondary",
+                            onclick: move |_| confirm_delete.set(None),
+                            "Cancel"
+                        }
+                        button {
+                            class: "btn btn-danger",
+                            onclick: move |_| {
+                                let id = del_id.clone();
+                                let name = del_name.clone();
+                                confirm_delete.set(None);
+                                spawn(async move {
+                                    match crate::infrastructure::repositories::delete_repository(id).await {
+                                        Ok(_) => {
+                                            toasts.push(ToastType::Success, format!("{name} deleted"));
+                                            repos.restart();
+                                        }
+                                        Err(e) => toasts.push(ToastType::Error, e.to_string()),
+                                    }
+                                });
+                            },
+                            "Delete"
+                        }
+                    }
+                }
+            }
+        }
+
+        // ── Edit repository dialog ──
+        if let Some(eid) = edit_repo_id() {
+            div { class: "modal-overlay",
+                div { class: "modal-dialog",
+                    h3 { "Edit Repository" }
+                    div { class: "form-group",
+                        label { "Name" }
+                        input {
+                            r#type: "text",
+                            value: "{edit_name}",
+                            oninput: move |e| edit_name.set(e.value()),
+                        }
+                    }
+                    div { class: "form-group",
+                        label { "Default Branch" }
+                        input {
+                            r#type: "text",
+                            value: "{edit_branch}",
+                            oninput: move |e| edit_branch.set(e.value()),
+                        }
+                    }
+                    h4 { style: "margin-top: 16px; margin-bottom: 8px; font-size: 14px; color: var(--text-secondary);", "Issue Tracker" }
+                    div { class: "form-group",
+                        label { "Tracker Type" }
+                        select {
+                            value: "{edit_tracker_type}",
+                            onchange: move |e| edit_tracker_type.set(e.value()),
+                            option { value: "", "None" }
+                            option { value: "github", "GitHub" }
+                            option { value: "gitlab", "GitLab" }
+                            option { value: "gitea", "Gitea" }
+                            option { value: "jira", "Jira" }
+                        }
+                    }
+                    div { class: "form-group",
+                        label { "Owner / Namespace" }
+                        input {
+                            r#type: "text",
+                            placeholder: "org-name",
+                            value: "{edit_tracker_owner}",
+                            oninput: move |e| edit_tracker_owner.set(e.value()),
+                        }
+                    }
+                    div { class: "form-group",
+                        label { "Repository / Project" }
+                        input {
+                            r#type: "text",
+                            placeholder: "repo-name",
+                            value: "{edit_tracker_repo}",
+                            oninput: move |e| edit_tracker_repo.set(e.value()),
+                        }
+                    }
+                    div { class: "form-group",
+                        label { "Tracker Token (leave empty to keep existing)" }
+                        input {
+                            r#type: "password",
+                            placeholder: "Enter new token to change",
+                            value: "{edit_tracker_token}",
+                            oninput: move |e| edit_tracker_token.set(e.value()),
+                        }
+                    }
+                    // Webhook configuration section
+                    if let Some(secret) = edit_webhook_secret() {
+                        h4 {
+                            style: "margin-top: 16px; margin-bottom: 8px; font-size: 14px; color: var(--text-secondary);",
+                            "Webhook Configuration"
+                        }
+                        p {
+                            style: "font-size: 12px; color: var(--text-secondary); margin-bottom: 8px;",
+                            "Add this webhook in your repository settings to enable push-triggered scans and PR reviews."
+                        }
+                        div { class: "form-group",
+                            label { "Webhook URL" }
+                            {
+                                #[cfg(feature = "web")]
+                                let origin = web_sys::window()
+                                    .and_then(|w: web_sys::Window| w.location().origin().ok())
+                                    .unwrap_or_default();
+                                #[cfg(not(feature = "web"))]
+                                let origin = String::new();
+                                let webhook_url = format!("{origin}/webhook/{}/{eid}", edit_webhook_tracker());
+                                rsx! {
+                                    div { class: "copyable",
+                                        input {
+                                            r#type: "text",
+                                            readonly: true,
+                                            style: "font-family: monospace; font-size: 12px; flex: 1;",
+                                            value: "{webhook_url}",
+                                        }
+                                        crate::components::copy_button::CopyButton { value: webhook_url.clone() }
+                                    }
+                                }
+                            }
+                        }
+                        div { class: "form-group",
+                            label { "Webhook Secret" }
+                            div { class: "copyable",
+                                input {
+                                    r#type: "text",
+                                    readonly: true,
+                                    style: "font-family: monospace; font-size: 12px; flex: 1;",
+                                    value: "{secret}",
+                                }
+                                crate::components::copy_button::CopyButton { value: secret.clone() }
+                            }
+                        }
+                    }
+                    div { class: "modal-actions",
+                        button {
+                            class: "btn btn-secondary",
+                            onclick: move |_| edit_repo_id.set(None),
+                            "Cancel"
+                        }
+                        button {
+                            class: "btn btn-primary",
+                            disabled: edit_saving(),
+                            onclick: move |_| {
+                                let id = eid.clone();
+                                let nm = { let v = edit_name(); if v.is_empty() { None } else { Some(v) } };
+                                let br = { let v = edit_branch(); if v.is_empty() { None } else { Some(v) } };
+                                let tt = { let v = edit_tracker_type(); if v.is_empty() { None } else { Some(v) } };
+                                let t_owner = { let v = edit_tracker_owner(); if v.is_empty() { None } else { Some(v) } };
+                                let t_repo = { let v = edit_tracker_repo(); if v.is_empty() { None } else { Some(v) } };
+                                let t_tok = { let v = edit_tracker_token(); if v.is_empty() { None } else { Some(v) } };
+                                edit_saving.set(true);
+                                spawn(async move {
+                                    match crate::infrastructure::repositories::update_repository(
+                                        id, nm, br, None, None, tt, t_owner, t_repo, t_tok, None,
+                                    ).await {
+                                        Ok(_) => {
+                                            toasts.push(ToastType::Success, "Repository updated");
+                                            repos.restart();
+                                        }
+                                        Err(e) => toasts.push(ToastType::Error, e.to_string()),
+                                    }
+                                    edit_saving.set(false);
+                                    edit_repo_id.set(None);
+                                });
+                            },
+                            if edit_saving() { "Saving..." } else { "Save" }
+                        }
+                    }
+                }
+            }
+        }
+
+        match &*repos.read() {
+            Some(Some(resp)) => {
+                let total_pages = resp.total.unwrap_or(0).div_ceil(20).max(1);
+                rsx! {
+                    div { class: "card",
+                        div { class: "table-wrapper",
+                            table {
+                                thead {
+                                    tr {
+                                        th { "Name" }
+                                        th { "Git URL" }
+                                        th { "Branch" }
+                                        th { "Findings" }
+                                        th { "Last Scanned" }
+                                        th { "Actions" }
+                                    }
+                                }
+                                tbody {
+                                    for repo in &resp.data {
+                                        {
+                                            let repo_id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
+                                            let repo_id_scan = repo_id.clone();
+                                            let repo_id_del = repo_id.clone();
+                                            let repo_id_edit = repo_id.clone();
+                                            let repo_name_del = repo.name.clone();
+                                            let edit_repo_data = repo.clone();
+                                            let is_scanning = scanning_ids().contains(&repo_id);
+                                            rsx! {
+                                                tr {
+                                                    td { "{repo.name}" }
+                                                    td {
+                                                        style: "font-size: 12px; font-family: monospace;",
+                                                        "{repo.git_url}"
+                                                    }
+                                                    td { "{repo.default_branch}" }
+                                                    td { "{repo.findings_count}" }
+                                                    td {
+                                                        {
+                                                            let now = chrono::Utc::now();
+                                                            let diff = now.signed_duration_since(repo.updated_at);
+                                                            let label = if diff.num_minutes() < 1 {
+                                                                "just now".to_string()
+                                                            } else if diff.num_hours() < 1 {
+                                                                format!("{}m ago", diff.num_minutes())
+                                                            } else if diff.num_days() < 1 {
+                                                                format!("{}h ago", diff.num_hours())
+                                                            } else if diff.num_days() < 30 {
+                                                                format!("{}d ago", diff.num_days())
+                                                            } else {
+                                                                repo.updated_at.format("%Y-%m-%d").to_string()
+                                                            };
+                                                            rsx! { span { style: "font-size: 12px;", "{label}" } }
+                                                        }
+                                                    }
+                                                    td { style: "display: flex; gap: 4px;",
+                                                        button {
+                                                            class: if graph_repo_id().as_deref() == Some(repo_id.as_str()) { "btn btn-ghost btn-active" } else { "btn btn-ghost" },
+                                                            title: "View graph",
+                                                            onclick: {
+                                                                let rid = repo_id.clone();
+                                                                move |_| {
+                                                                    if graph_repo_id().as_deref() == Some(rid.as_str()) {
+                                                                        graph_repo_id.set(None);
+                                                                    } else {
+                                                                        graph_repo_id.set(Some(rid.clone()));
+                                                                    }
+                                                                }
+                                                            },
+                                                            Icon { icon: BsDiagram3, width: 16, height: 16 }
+                                                        }
+                                                        button {
+                                                            class: "btn btn-ghost",
+                                                            title: "Edit repository",
+                                                            onclick: move |_| {
+                                                                edit_name.set(edit_repo_data.name.clone());
+                                                                edit_branch.set(edit_repo_data.default_branch.clone());
+                                                                edit_tracker_type.set(
+                                                                    edit_repo_data.tracker_type.as_ref().map(|t| t.to_string()).unwrap_or_default()
+                                                                );
+                                                                edit_tracker_owner.set(edit_repo_data.tracker_owner.clone().unwrap_or_default());
+                                                                edit_tracker_repo.set(edit_repo_data.tracker_repo.clone().unwrap_or_default());
+                                                                edit_tracker_token.set(String::new());
+                                                                edit_webhook_secret.set(None);
+                                                                edit_webhook_tracker.set(String::new());
+                                                                edit_repo_id.set(Some(repo_id_edit.clone()));
+                                                                // Fetch webhook config in background
+                                                                let rid = repo_id_edit.clone();
+                                                                spawn(async move {
+                                                                    if let Ok(cfg) = crate::infrastructure::repositories::fetch_webhook_config(rid).await {
+                                                                        edit_webhook_secret.set(cfg.webhook_secret);
+                                                                        edit_webhook_tracker.set(cfg.tracker_type);
+                                                                    }
+                                                                });
+                                                            },
+                                                            Icon { icon: BsPencil, width: 16, height: 16 }
+                                                        }
+                                                        button {
+                                                            class: if is_scanning { "btn btn-ghost btn-scanning" } else { "btn btn-ghost" },
+                                                            title: "Trigger scan",
+                                                            disabled: is_scanning,
+                                                            onclick: move |_| {
+                                                                let id = repo_id_scan.clone();
+                                                                // Add to scanning set
+                                                                let mut ids = scanning_ids();
+                                                                ids.push(id.clone());
+                                                                scanning_ids.set(ids);
+                                                                spawn(async move {
+                                                                    match crate::infrastructure::repositories::trigger_repo_scan(id.clone()).await {
+                                                                        Ok(_) => {
+                                                                            toasts.push(ToastType::Success, "Scan triggered");
+                                                                            // Poll until scan completes
+                                                                            loop {
+                                                                                async_sleep_5s().await;
+                                                                                match crate::infrastructure::repositories::check_repo_scanning(id.clone()).await {
+                                                                                    Ok(false) => break,
+                                                                                    Ok(true) => continue,
+                                                                                    Err(_) => break,
+                                                                                }
+                                                                            }
+                                                                            toasts.push(ToastType::Success, "Scan complete");
+                                                                            repos.restart();
+                                                                        }
+                                                                        Err(e) => toasts.push(ToastType::Error, e.to_string()),
+                                                                    }
+                                                                    // Remove from scanning set
+                                                                    let mut ids = scanning_ids();
+                                                                    ids.retain(|i| i != &id);
+                                                                    scanning_ids.set(ids);
+                                                                });
+                                                            },
+                                                            if is_scanning {
+                                                                span { class: "spinner" }
+                                                            } else {
+                                                                Icon { icon: BsPlayCircle, width: 16, height: 16 }
+                                                            }
+                                                        }
+                                                        button {
+                                                            class: "btn btn-ghost btn-ghost-danger",
+                                                            title: "Delete repository",
+                                                            onclick: move |_| {
+                                                                confirm_delete.set(Some((repo_id_del.clone(), repo_name_del.clone())));
+                                                            },
+                                                            Icon { icon: BsTrash, width: 16, height: 16 }
+                                                        }
+                                                    }
+                                                }
+                                            }
+                                        }
+                                    }
+                                }
+                            }
+                        }
+                        Pagination {
+                            current_page: page(),
+                            total_pages: total_pages,
+                            on_page_change: move |p| page.set(p),
+                        }
+                    }
+
+                    // Inline graph explorer
+                    if let Some(rid) = graph_repo_id() {
+                        div { class: "card", style: "margin-top: 16px;",
+                            div { class: "card-header", style: "display: flex; justify-content: space-between; align-items: center;",
+                                span { "Code Graph" }
+                                button {
+                                    class: "btn btn-sm btn-ghost",
+                                    title: "Close graph",
+                                    onclick: move |_| { graph_repo_id.set(None); },
+                                    Icon { icon: BsX, width: 18, height: 18 }
+                                }
+                            }
+                            GraphExplorerInline { repo_id: rid }
+                        }
+                    }
+                }
+            },
+            Some(None) => rsx! {
+                div { class: "card", p { "Failed to load repositories." } }
+            },
+            None => rsx! {
+                div { class: "loading", "Loading repositories..." }
+            },
+        }
+    }
+}

compliance-dashboard/src/pages/sbom.rs

@@ -28,9 +28,9 @@ pub fn SbomPage() -> Element {
     let mut diff_repo_a = use_signal(String::new);
     let mut diff_repo_b = use_signal(String::new);
 
-    // ── Targets for dropdowns ──
+    // ── Repos for dropdowns ──
     let repos = use_resource(|| async {
-        crate::infrastructure::onboarding::fetch_targets()
+        crate::infrastructure::repositories::fetch_repositories(1)
             .await
             .ok()
     });
@@ -114,14 +114,14 @@ pub fn SbomPage() -> Element {
                 select {
                     class: "sbom-filter-select",
                     onchange: move |e| { repo_filter.set(e.value()); page.set(1); },
-                    option { value: "", "All Targets" }
+                    option { value: "", "All Repositories" }
                     {
                         match &*repos.read() {
                             Some(Some(resp)) => rsx! {
                                 for repo in &resp.data {
                                     {
-                                        let id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                        let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
+                                        let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
+                                        let name = repo.name.clone();
                                         rsx! { option { value: "{id}", "{name}" } }
                                     }
                                 }
@@ -476,8 +476,8 @@ pub fn SbomPage() -> Element {
                                     Some(Some(resp)) => rsx! {
                                         for repo in &resp.data {
                                             {
-                                                let id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                                let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
+                                                let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
+                                                let name = repo.name.clone();
                                                 rsx! { option { value: "{id}", "{name}" } }
                                             }
                                         }
@@ -498,8 +498,8 @@ pub fn SbomPage() -> Element {
                                     Some(Some(resp)) => rsx! {
                                         for repo in &resp.data {
                                             {
-                                                let id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                                let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
+                                                let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
+                                                let name = repo.name.clone();
                                                 rsx! { option { value: "{id}", "{name}" } }
                                             }
                                         }

compliance-dashboard/src/pages/targets.rs

@@ -1,544 +0,0 @@
-//! Targets page — lists onboarded targets (the unified `OnboardedTarget`
-//! records the wizard creates) and lets the user run a scan, inspect the
-//! classification / applicable scans, or delete a target.
-//!
-//! Creation lives in the Onboard wizard (`/onboard`); this page is the
-//! "where is my target, and what did the scan find" surface.
-
-use dioxus::prelude::*;
-use dioxus_free_icons::icons::bs_icons::*;
-use dioxus_free_icons::Icon;
-
-use crate::components::page_header::PageHeader;
-use crate::components::toast::{ToastType, Toasts};
-use crate::infrastructure::onboarding::{
-    delete_target, fetch_applicable_scans, fetch_targets, trigger_target_scan, update_target,
-    validate_artifact_ref, validate_target_name, ArtifactInputDto,
-};
-
-/// The nine target families (value, label) for the edit form's type selector.
-const TARGET_TYPES: &[(&str, &str)] = &[
-    ("web_app", "Web Application"),
-    ("backend_service", "Backend / API"),
-    ("desktop_app", "Desktop App"),
-    ("android_app", "Android App"),
-    ("ios_app", "iOS App"),
-    ("firmware_bare_metal", "Firmware — bare metal"),
-    ("firmware_rtos", "Firmware — RTOS"),
-    ("embedded_linux_yocto", "Embedded Linux / Yocto"),
-    ("plc_sps", "PLC / SPS"),
-];
-
-/// The artifact kinds (value, label) for the edit form.
-const ARTIFACT_KINDS: &[(&str, &str)] = &[
-    ("git_repo", "Git repository"),
-    ("source_archive", "Source archive (zip)"),
-    ("firmware_image", "Firmware image"),
-    ("mobile_package", "Mobile package (APK/IPA)"),
-    ("container_image", "Container image"),
-    ("live_url", "Live URL"),
-    ("plc_project", "PLC project"),
-    ("plaintext_description", "Description (text)"),
-];
-
-/// Prettify a snake_case target-type value into a human label.
-fn pretty_type(v: &str) -> String {
-    match v {
-        "web_app" => "Web Application".into(),
-        "backend_service" => "Backend / API".into(),
-        "desktop_app" => "Desktop App".into(),
-        "android_app" => "Android App".into(),
-        "ios_app" => "iOS App".into(),
-        "firmware_bare_metal" => "Firmware — bare metal".into(),
-        "firmware_rtos" => "Firmware — RTOS".into(),
-        "embedded_linux_yocto" => "Embedded Linux / Yocto".into(),
-        "plc_sps" => "PLC / SPS".into(),
-        other => other.replace('_', " "),
-    }
-}
-
-fn str_at<'a>(v: &'a serde_json::Value, key: &str) -> &'a str {
-    v.get(key).and_then(|x| x.as_str()).unwrap_or("")
-}
-
-fn target_id(t: &serde_json::Value) -> String {
-    t.get("_id")
-        .and_then(|o| o.get("$oid"))
-        .and_then(|s| s.as_str())
-        .unwrap_or_default()
-        .to_string()
-}
-
-/// The applicable-scans matrix for one target, fetched on expand.
-#[component]
-fn TargetScans(id: String) -> Element {
-    let scan_id = id.clone();
-    let scans = use_resource(move || {
-        let id = scan_id.clone();
-        async move { fetch_applicable_scans(id).await.ok() }
-    });
-
-    let snapshot = scans.read().clone();
-    match &snapshot {
-        Some(Some(resp)) => {
-            let rows = resp.data.scans.clone();
-            let pentest = resp.data.pentest_supported;
-            rsx! {
-                div { style: "margin-top: 8px;",
-                    if rows.is_empty() {
-                        div { style: "opacity: 0.6;", "No scans available (no code / URL / firmware artifact present)." }
-                    }
-                    for s in rows {
-                        {
-                            let name = str_at(&s, "scan").to_string();
-                            let rationale = str_at(&s, "rationale").to_string();
-                            let blocked = s.get("blocked_reason").and_then(|b| b.as_str()).map(String::from);
-                            let default_on = s.get("default_on").and_then(|b| b.as_bool()).unwrap_or(false);
-                            let badge = if blocked.is_some() {
-                                "badge badge-info"
-                            } else if default_on {
-                                "badge badge-success"
-                            } else {
-                                "badge"
-                            };
-                            rsx! {
-                                div { style: "display: flex; gap: 8px; align-items: center; padding: 4px 0;",
-                                    span { class: "{badge}", "{name}" }
-                                    span { style: "opacity: 0.8; font-size: 0.9em;", "{rationale}" }
-                                    if let Some(b) = blocked {
-                                        span { style: "opacity: 0.6; font-style: italic; font-size: 0.9em;", "— {b}" }
-                                    }
-                                }
-                            }
-                        }
-                    }
-                    if pentest {
-                        div { style: "margin-top: 6px; opacity: 0.75; font-size: 0.85em;",
-                            "Active pentest is supported for this target type."
-                        }
-                    }
-                }
-            }
-        }
-        Some(None) => rsx! { div { style: "opacity: 0.6;", "Failed to load applicable scans." } },
-        None => rsx! { div { style: "opacity: 0.6;", "Loading scans..." } },
-    }
-}
-
-#[component]
-pub fn TargetsPage() -> Element {
-    let mut toasts = use_context::<Toasts>();
-    let mut scanning_ids = use_signal(Vec::<String>::new);
-    let mut expanded_ids = use_signal(Vec::<String>::new);
-    let mut confirm_delete = use_signal(|| Option::<(String, String)>::None);
-
-    // Edit-target modal state.
-    let mut edit_id = use_signal(|| Option::<String>::None);
-    let mut edit_name = use_signal(String::new);
-    let mut edit_type = use_signal(String::new);
-    let mut edit_arts = use_signal(Vec::<ArtifactInputDto>::new);
-    let mut edit_saving = use_signal(|| false);
-    // In-modal "add artifact" mini-form.
-    let mut e_kind = use_signal(|| "git_repo".to_string());
-    let mut e_source = use_signal(String::new);
-    let mut e_branch = use_signal(|| "main".to_string());
-
-    let mut targets = use_resource(move || async move { fetch_targets().await.ok() });
-
-    rsx! {
-        PageHeader {
-            title: "Targets",
-            description: "Onboarded targets and what their scans found. Add new targets from Onboard.",
-        }
-
-        div { style: "margin-bottom: 16px; display: flex; gap: 8px;",
-            Link { to: crate::app::Route::OnboardingPage {}, class: "btn btn-primary",
-                "+ Onboard a target"
-            }
-            button {
-                class: "btn btn-secondary",
-                onclick: move |_| targets.restart(),
-                "Refresh"
-            }
-        }
-
-        // ── Delete confirmation ──
-        if let Some((del_id, del_name)) = confirm_delete() {
-            div { class: "modal-overlay",
-                div { class: "modal-dialog",
-                    h3 { "Delete Target" }
-                    p { "Delete " strong { "{del_name}" } "?" }
-                    p { class: "modal-warning",
-                        "This permanently removes the target and its findings, SBOM entries, scan runs, and CVE alerts."
-                    }
-                    div { class: "modal-actions",
-                        button {
-                            class: "btn btn-secondary",
-                            onclick: move |_| confirm_delete.set(None),
-                            "Cancel"
-                        }
-                        button {
-                            class: "btn btn-danger",
-                            onclick: move |_| {
-                                let id = del_id.clone();
-                                let name = del_name.clone();
-                                confirm_delete.set(None);
-                                spawn(async move {
-                                    match delete_target(id).await {
-                                        Ok(_) => {
-                                            toasts.push(ToastType::Success, format!("{name} deleted"));
-                                            targets.restart();
-                                        }
-                                        Err(e) => toasts.push(ToastType::Error, e.to_string()),
-                                    }
-                                });
-                            },
-                            "Delete"
-                        }
-                    }
-                }
-            }
-        }
-
-        // ── Edit target ──
-        if let Some(eid) = edit_id() {
-            {
-            let name_err = validate_target_name(&edit_name());
-            let e_source_err = if e_source().is_empty() {
-                None
-            } else {
-                validate_artifact_ref(&e_kind(), &e_source())
-            };
-            rsx! {
-                div { class: "modal-overlay",
-                    div { class: "modal-dialog",
-                        h3 { "Edit target" }
-                        div { class: "form-group",
-                            label { "Name" }
-                            input {
-                                r#type: "text",
-                                value: "{edit_name}",
-                                oninput: move |e| edit_name.set(e.value()),
-                            }
-                            if !edit_name().is_empty() {
-                                if let Some(err) = name_err.clone() {
-                                    div { style: "color: var(--danger, #d33); font-size: 0.85em;", "{err}" }
-                                }
-                            }
-                        }
-                        div { class: "form-group",
-                            label { "Type" }
-                            select {
-                                value: "{edit_type}",
-                                oninput: move |e| edit_type.set(e.value()),
-                                for (v, l) in TARGET_TYPES.iter().copied() {
-                                    option { value: "{v}", selected: edit_type() == v, "{l}" }
-                                }
-                            }
-                        }
-                        label { style: "font-weight: 600;", "Artifacts" }
-                        for (i, a) in edit_arts().iter().enumerate() {
-                            div { style: "display: flex; justify-content: space-between; align-items: center; padding: 4px 0;",
-                                span { style: "font-size: 0.9em;",
-                                    span { style: "opacity: 0.7;", "{a.kind}: " }
-                                    span { style: "font-family: monospace;", "{a.source_ref}" }
-                                }
-                                button {
-                                    class: "btn btn-ghost btn-ghost-danger btn-sm",
-                                    onclick: move |_| { edit_arts.write().remove(i); },
-                                    "Remove"
-                                }
-                            }
-                        }
-                        div { style: "display: flex; gap: 8px; align-items: flex-end; margin-top: 8px;",
-                            div { class: "form-group", style: "margin: 0;",
-                                label { "Kind" }
-                                select {
-                                    value: "{e_kind}",
-                                    oninput: move |e| e_kind.set(e.value()),
-                                    for (v, l) in ARTIFACT_KINDS.iter().copied() {
-                                        option { value: "{v}", selected: e_kind() == v, "{l}" }
-                                    }
-                                }
-                            }
-                            div { class: "form-group", style: "margin: 0; flex: 1;",
-                                label { "Reference" }
-                                input {
-                                    r#type: "text",
-                                    value: "{e_source}",
-                                    oninput: move |e| e_source.set(e.value()),
-                                }
-                            }
-                            if e_kind() == "git_repo" {
-                                div { class: "form-group", style: "margin: 0;",
-                                    label { "Branch" }
-                                    input {
-                                        r#type: "text",
-                                        value: "{e_branch}",
-                                        oninput: move |e| e_branch.set(e.value()),
-                                    }
-                                }
-                            }
-                            button {
-                                class: "btn btn-secondary",
-                                disabled: e_source().trim().is_empty() || e_source_err.is_some(),
-                                onclick: move |_| {
-                                    let kind = e_kind();
-                                    if !e_source().trim().is_empty()
-                                        && validate_artifact_ref(&kind, &e_source()).is_none()
-                                    {
-                                        let branch = if kind == "git_repo" { Some(e_branch()) } else { None };
-                                        edit_arts.write().push(ArtifactInputDto {
-                                            kind,
-                                            source_ref: e_source(),
-                                            branch,
-                                            plc_format: None,
-                                        });
-                                        e_source.set(String::new());
-                                    }
-                                },
-                                "+ Add"
-                            }
-                        }
-                        if let Some(err) = e_source_err.clone() {
-                            div { style: "color: var(--danger, #d33); font-size: 0.85em;", "{err}" }
-                        }
-                        div { class: "modal-actions",
-                            button {
-                                class: "btn btn-secondary",
-                                onclick: move |_| edit_id.set(None),
-                                "Cancel"
-                            }
-                            button {
-                                class: "btn btn-primary",
-                                disabled: edit_saving() || name_err.is_some(),
-                                onclick: move |_| {
-                                    let id = eid.clone();
-                                    let nm = edit_name();
-                                    let tt = edit_type();
-                                    let arts = edit_arts();
-                                    edit_saving.set(true);
-                                    spawn(async move {
-                                        match update_target(id, Some(nm), Some(tt), Some(arts)).await {
-                                            Ok(_) => {
-                                                toasts.push(ToastType::Success, "Target updated");
-                                                targets.restart();
-                                                edit_id.set(None);
-                                            }
-                                            Err(e) => toasts.push(ToastType::Error, e.to_string()),
-                                        }
-                                        edit_saving.set(false);
-                                    });
-                                },
-                                if edit_saving() { "Saving..." } else { "Save" }
-                            }
-                        }
-                    }
-                }
-            }
-            }
-        }
-
-        {
-        let targets_snapshot = targets.read().clone();
-        match &targets_snapshot {
-            Some(Some(resp)) => {
-                let rows = resp.data.clone();
-                if rows.is_empty() {
-                    rsx! {
-                        div { class: "card", style: "padding: 24px; text-align: center;",
-                            p { style: "opacity: 0.7;", "No targets yet." }
-                            Link { to: crate::app::Route::OnboardingPage {}, class: "btn btn-primary",
-                                "Onboard your first target"
-                            }
-                        }
-                    }
-                } else {
-                    rsx! {
-                        div { class: "card",
-                            div { class: "table-wrapper",
-                                table {
-                                    thead {
-                                        tr {
-                                            th { "Name" }
-                                            th { "Type" }
-                                            th { "Detected" }
-                                            th { "Artifacts" }
-                                            th { "Findings" }
-                                            th { "Actions" }
-                                        }
-                                    }
-                                    tbody {
-                                        for t in rows {
-                                            {
-                                                let id = target_id(&t);
-                                                let name = str_at(&t, "name").to_string();
-                                                let ttype = pretty_type(str_at(&t, "target_type"));
-                                                let suggested = t
-                                                    .get("classification")
-                                                    .and_then(|c| c.get("suggested"))
-                                                    .and_then(|s| s.as_str())
-                                                    .map(pretty_type);
-                                                let artifacts = t
-                                                    .get("artifacts")
-                                                    .and_then(|a| a.as_array())
-                                                    .cloned()
-                                                    .unwrap_or_default();
-                                                let findings = t
-                                                    .get("findings_count")
-                                                    .and_then(|n| n.as_u64())
-                                                    .unwrap_or(0);
-                                                let facts = t
-                                                    .get("classification")
-                                                    .and_then(|c| c.get("facts"))
-                                                    .and_then(|f| f.as_array())
-                                                    .cloned()
-                                                    .unwrap_or_default();
-                                                let is_scanning = scanning_ids().contains(&id);
-                                                let is_expanded = expanded_ids().contains(&id);
-                                                let id_scan = id.clone();
-                                                let id_exp = id.clone();
-                                                let id_del = id.clone();
-                                                let id_edit = id.clone();
-                                                let name_del = name.clone();
-                                                let name_edit = name.clone();
-                                                let ttype_raw = str_at(&t, "target_type").to_string();
-                                                let artifacts_detail = artifacts.clone();
-                                                let artifacts_edit = artifacts.clone();
-                                                rsx! {
-                                                    tr {
-                                                        td { strong { "{name}" } }
-                                                        td { "{ttype}" }
-                                                        td {
-                                                            if let Some(sug) = suggested.clone() {
-                                                                span { class: "badge badge-success", "{sug}" }
-                                                            } else {
-                                                                span { style: "opacity: 0.5;", "—" }
-                                                            }
-                                                        }
-                                                        td { "{artifacts.len()}" }
-                                                        td { "{findings}" }
-                                                        td { style: "display: flex; gap: 4px;",
-                                                            button {
-                                                                class: "btn btn-ghost",
-                                                                title: "Details",
-                                                                onclick: move |_| {
-                                                                    let mut ids = expanded_ids();
-                                                                    if ids.contains(&id_exp) {
-                                                                        ids.retain(|i| i != &id_exp);
-                                                                    } else {
-                                                                        ids.push(id_exp.clone());
-                                                                    }
-                                                                    expanded_ids.set(ids);
-                                                                },
-                                                                Icon { icon: BsInfoCircle, width: 16, height: 16 }
-                                                            }
-                                                            button {
-                                                                class: "btn btn-ghost",
-                                                                title: "Edit target",
-                                                                onclick: move |_| {
-                                                                    edit_name.set(name_edit.clone());
-                                                                    edit_type.set(ttype_raw.clone());
-                                                                    let arts: Vec<ArtifactInputDto> = artifacts_edit
-                                                                        .iter()
-                                                                        .map(|a| ArtifactInputDto {
-                                                                            kind: str_at(a, "kind").to_string(),
-                                                                            source_ref: str_at(a, "source_ref").to_string(),
-                                                                            branch: a
-                                                                                .get("git")
-                                                                                .and_then(|g| g.get("default_branch"))
-                                                                                .and_then(|b| b.as_str())
-                                                                                .map(String::from),
-                                                                            plc_format: None,
-                                                                        })
-                                                                        .collect();
-                                                                    edit_arts.set(arts);
-                                                                    e_source.set(String::new());
-                                                                    edit_id.set(Some(id_edit.clone()));
-                                                                },
-                                                                Icon { icon: BsPencil, width: 16, height: 16 }
-                                                            }
-                                                            button {
-                                                                class: if is_scanning { "btn btn-ghost btn-scanning" } else { "btn btn-ghost" },
-                                                                title: "Run scan",
-                                                                disabled: is_scanning,
-                                                                onclick: move |_| {
-                                                                    let id = id_scan.clone();
-                                                                    let mut ids = scanning_ids();
-                                                                    ids.push(id.clone());
-                                                                    scanning_ids.set(ids);
-                                                                    spawn(async move {
-                                                                        match trigger_target_scan(id.clone()).await {
-                                                                            Ok(_) => toasts.push(ToastType::Success, "Scan triggered — findings appear as it runs. Use Refresh."),
-                                                                            Err(e) => toasts.push(ToastType::Error, e.to_string()),
-                                                                        }
-                                                                        let mut ids = scanning_ids();
-                                                                        ids.retain(|i| i != &id);
-                                                                        scanning_ids.set(ids);
-                                                                    });
-                                                                },
-                                                                if is_scanning {
-                                                                    span { class: "spinner" }
-                                                                } else {
-                                                                    Icon { icon: BsPlayCircle, width: 16, height: 16 }
-                                                                }
-                                                            }
-                                                            button {
-                                                                class: "btn btn-ghost btn-ghost-danger",
-                                                                title: "Delete target",
-                                                                onclick: move |_| {
-                                                                    confirm_delete.set(Some((id_del.clone(), name_del.clone())));
-                                                                },
-                                                                Icon { icon: BsTrash, width: 16, height: 16 }
-                                                            }
-                                                        }
-                                                    }
-                                                    if is_expanded {
-                                                        tr {
-                                                            td { colspan: "6",
-                                                                div { style: "padding: 12px 8px;",
-                                                                    h4 { style: "margin: 0 0 6px;", "Artifacts" }
-                                                                    if artifacts_detail.is_empty() {
-                                                                        div { style: "opacity: 0.6;", "No artifacts." }
-                                                                    }
-                                                                    for a in artifacts_detail {
-                                                                        div { style: "font-size: 0.9em; padding: 2px 0;",
-                                                                            span { style: "opacity: 0.7;", "{str_at(&a, \"kind\")}: " }
-                                                                            span { style: "font-family: monospace;", "{str_at(&a, \"source_ref\")}" }
-                                                                        }
-                                                                    }
-                                                                    if !facts.is_empty() {
-                                                                        h4 { style: "margin: 12px 0 6px;", "Detected facts" }
-                                                                        for f in facts {
-                                                                            div { style: "font-size: 0.9em; padding: 2px 0;",
-                                                                                span { style: "font-family: monospace;", "{str_at(&f, \"key\")}={str_at(&f, \"value\")}" }
-                                                                                span { style: "opacity: 0.5;", " ({str_at(&f, \"source\")})" }
-                                                                            }
-                                                                        }
-                                                                    }
-                                                                    h4 { style: "margin: 12px 0 6px;", "Applicable scans" }
-                                                                    TargetScans { id: id.clone() }
-                                                                }
-                                                            }
-                                                        }
-                                                    }
-                                                }
-                                            }
-                                        }
-                                    }
-                                }
-                            }
-                        }
-                    }
-                }
-            }
-            Some(None) => rsx! {
-                div { class: "card", p { "Failed to load targets." } }
-            },
-            None => rsx! {
-                div { class: "loading", "Loading targets..." }
-            },
-        }
-        }
-    }
-}

docker/agent-entrypoint.sh

@@ -1,19 +0,0 @@
-#!/usr/bin/env bash
-# Seed the nix store on first start, then run the agent.
-#
-# The firmware-SBOM pipeline drives a real `nix` build (tramiton NixBackend).
-# The image ships the store as a bootstrap tarball rather than baking /nix, so a
-# persistent /nix volume (mounted empty on first deploy) gets populated once and
-# then survives redeploys. Seeding is best-effort: if it fails, the agent still
-# starts and firmware SBOMs fall back to analysis-only.
-if [ ! -e /nix/store ]; then
-  echo "agent-entrypoint: seeding /nix store from image bootstrap..."
-  mkdir -p /nix
-  if tar -C / -xzf /opt/nix-bootstrap.tar.gz; then
-    echo "agent-entrypoint: /nix store seeded."
-  else
-    echo "agent-entrypoint: WARN nix seed failed; firmware SBOM will use analysis-only fallback."
-  fi
-fi
-
-exec compliance-agent "$@"

docs/.vitepress/config.mts

@@ -20,7 +20,6 @@ export default withMermaid(defineConfig({
           { text: 'Getting Started', link: '/guide/getting-started' },
           { text: 'Adding Repositories', link: '/guide/repositories' },
           { text: 'Running Scans', link: '/guide/scanning' },
-          { text: 'PLC / SPS (CODESYS)', link: '/guide/plc' },
           { text: 'Understanding Findings', link: '/guide/findings' },
           { text: 'SBOM & Licenses', link: '/guide/sbom' },
           { text: 'Issues & Tracking', link: '/guide/issues' },
@@ -44,7 +43,6 @@ export default withMermaid(defineConfig({
         items: [
           { text: 'Glossary', link: '/reference/glossary' },
           { text: 'Tools & Scanners', link: '/reference/tools' },
-          { text: 'PLC Runtime Landscape', link: '/reference/plc-runtimes' },
         ],
       },
     ],

docs/guide/plc.md

@@ -1,163 +0,0 @@
-# PLC / SPS Projects (CODESYS)
-
-Certifai analyzes industrial control logic (IEC 61131-3) for PLC/SPS targets such
-as CODESYS projects. A single PLC/SPS target is treated as a **composite device**:
-the control application *and* the device it runs on.
-
-| What you provide | What Certifai does |
-| --- | --- |
-| PLC project (PLCopen XML / ST, or a `.projectarchive`) | **Control-logic SAST** — semantic security rules over ST **and** graphical FBD/LD |
-| A `.projectarchive` | **Control-app SBOM** — the referenced CODESYS libraries + the runtime version, matched against known CVEs |
-| A device firmware image | Firmware SBOM / CVE (opt-in) |
-| A reachable endpoint (WebVisu, OPC UA) | DAST / pentest (opt-in) |
-
-## Anatomy: a soft PLC is a SoC + Linux + runtime
-
-A CODESYS controller is **not** a monolithic appliance like a classic Siemens
-S7. It is **PC-based ("soft") control** — commodity silicon running a
-general-purpose Linux, with a **software PLC runtime** as just another process:
-
-| Classic PLC (e.g. Siemens S7) | Soft PLC (CODESYS-on-Yocto, OpenPLC-on-Raspbian) |
-| --- | --- |
-| Proprietary hardware + firmware | Commodity SoC (x86 / ARM) |
-| Proprietary OS | General-purpose Linux (a **Yocto** image, or Raspbian) |
-| Proprietary runtime | Software runtime (**CODESYS Control**, or OpenPLC) |
-| STEP7 / TIA project | IEC 61131-3 control app (ST / LD / FBD / SFC) |
-
-Because of this, the device is built along **two independent tracks**, by
-different people, on different timelines, and shipped separately. It also
-inherits the **entire Linux / IT attack surface on top of** the OT / control
-one — which is exactly why a PLC/SPS target is treated as a **composite**:
-Certifai ingests one artifact per layer and scans each with the right pipeline.
-
-```mermaid
-flowchart TB
-    subgraph TA["Track A · Device platform — built by the hardware OEM / vendor"]
-        direction LR
-        A1["Yocto / OpenEmbedded<br/>BSP + RT kernel"] --> A2["Bake in the CODESYS<br/>Control for Linux runtime"] --> A3["bitbake → device image<br/>.wic / .tar + manifest"]
-    end
-    subgraph TB2["Track B · Control application — built by the machine builder / customer"]
-        direction LR
-        B1["CODESYS IDE<br/>ST / LD / FBD / SFC + WebVisu"] --> B2["Reference CODESYS +<br/>vendor libraries"] --> B3["Compile → download<br/>to device (gateway 11740)"]
-    end
-
-    A3 --> DEV(["Running soft-PLC device<br/>SoC + Linux + runtime + control app<br/>Modbus · OPC UA · EtherNet/IP · WebVisu"])
-    B3 --> DEV
-
-    subgraph CERT["What Certifai scans — one layer per artifact"]
-        direction LR
-        S1["Firmware layer<br/>FirmwareStatic · SBOM · CVE"]
-        S2["Control-logic layer<br/>PLC SAST — ST + FBD/LD"]
-        S3["Control-app SBOM<br/>libraries + runtime → CVE"]
-        S4["Running layer<br/>ICS probe · DAST (WebVisu)"]
-    end
-
-    A3 -. firmware image .-> S1
-    B1 -. PLCopen XML / ST via git .-> S2
-    B2 -. projectarchive (zip) .-> S3
-    DEV -. live URL / provisioned .-> S4
-
-    classDef yocto fill:#fde68a,stroke:#b45309,color:#111
-    classDef codesys fill:#bfdbfe,stroke:#1d4ed8,color:#111
-    classDef dev fill:#e9d5ff,stroke:#7e22ce,color:#111
-    classDef cert fill:#bbf7d0,stroke:#15803d,color:#111
-    class A1,A2,A3 yocto
-    class B1,B2,B3 codesys
-    class DEV dev
-    class S1,S2,S3,S4 cert
-```
-
-::: tip Where Yocto fits
-Yocto is **Track A** — the *build system* for the device platform. It produces
-the Linux image and bakes in the CODESYS runtime, so it is the **firmware
-layer**, entirely separate from the control application. Hand it to Certifai as
-its own **firmware image** artifact (scanned by the firmware pipeline, not the
-PLC pipeline). The device OS need not be Yocto — Raspbian/Debian/Buildroot, or
-even an RTOS / bare-metal, are all possible — but Yocto is the common,
-product-grade industrial choice.
-:::
-
-## Two ways to deliver the project
-
-You can either **upload** the project when onboarding, or point Certifai at a
-**git repository** (recommended — every scan is just a `git pull`, no re-upload).
-
-### Option A — Upload
-
-On the onboarding wizard, choose target type **PLC / SPS**, then attach a **PLC
-project** artifact and pick its format:
-
-- **PLCopen XML** (`.xml`) — export from CODESYS via *Project → Export PLCopenXML*.
-- **Structured Text** (`.st`) — a raw ST file.
-- **Project archive** (`.projectarchive`) — *File → Project Archive → Save/Send
-  Archive…* with **"Referenced libraries"** ticked. This is the only form that
-  also yields the **library + runtime SBOM**.
-
-### Option B — Git repository (recommended)
-
-Attach a **Git repository** artifact to the PLC/SPS target. Certifai clones it and
-runs the control-logic scan over the exported source in the repo.
-
-## Best-case git repository layout
-
-Because the binary `.project` does not diff or merge in git, commit **textual
-exports** for review-friendly SAST, and include the **`.projectarchive`** so the
-library/runtime SBOM is available too:
-
-```text
-my-plc-project/
-├── src/
-│   ├── PLC_PRG.xml          # PLCopen XML export (ST or FBD/LD) — one per POU
-│   ├── PumpController.xml
-│   ├── SafetyInterlock.xml
-│   └── GVL.xml              # global variable lists, also as PLCopen XML
-├── PumpStation.projectarchive   # optional but recommended → library + runtime SBOM
-└── README.md
-```
-
-**Guidelines**
-
-- **Export to PLCopen XML** (`Project → Export PLCopenXML`), one file per POU, and
-  commit those. ST, **and graphical FBD/LD**, are both analyzed.
-- Alternatively commit raw `.st` / `.exp` / `.scl` files — also analyzed.
-- **Do not** commit only the binary `.project` — it cannot be parsed (and does not
-  diff). If you want the library SBOM, commit the **`.projectarchive`** as well.
-- CODESYS's built-in Git integration, which stores an exported representation,
-  works too — as long as the committed form is PLCopen XML / textual.
-
-::: tip What unlocks what
-- **Control-logic SAST** needs textual source in the repo (PLCopen XML or `.st`).
-- **Library + runtime SBOM** needs a **`.projectarchive`** — PLCopen XML exports do
-  **not** carry the referenced libraries.
-:::
-
-## What the scanner finds
-
-The control-logic rules are CWE-mapped and include: hardcoded credentials
-(CWE-798), default/weak passwords (CWE-1393), safety interlock / watchdog bypass
-(CWE-1384), unchecked array indexing (CWE-129), division-by-zero (CWE-369,
-guard-aware), cleartext/insecure communication (CWE-319), insecure protocol ports
-(CWE-319, e.g. Modbus 502, FTP 21, Telnet 23), and unstructured jumps (CWE-691).
-
-The **SBOM** view lists the CODESYS libraries (`pkg:codesys/<name>@<version>`) and
-the runtime; matching runtime components (e.g. the `Cmp*` / `3SLicense` libraries)
-surface real CODESYS advisories as CVE alerts.
-
-## Dynamic testing — ICS protocol probe
-
-Beyond the static analysis, Certifai can **probe the running device** over
-industrial protocols. Attach a **Live URL** artifact (the device host / WebVisu
-URL) to the PLC/SPS target and enable the **ICS Probe** scan.
-
-The probe is **read-only** — it never writes to the live process. It currently
-speaks **Modbus/TCP** (port 502): it confirms whether the device answers
-unauthenticated Modbus requests and reads its device identity (vendor / product /
-revision). Because Modbus/TCP has no authentication or encryption in the protocol,
-a reachable endpoint that answers is reported as an exposed control interface
-(CWE-306). OPC UA and EtherNet/IP probes are planned.
-
-::: warning
-The ICS probe connects to the live device. It is **opt-in** (off by default) and
-should only be run against targets you are authorized to test. It performs reads
-only, never writes.
-:::

docs/reference/plc-runtimes.md

@@ -1,97 +0,0 @@
-# PLC Runtime Landscape & Support
-
-A soft PLC is a **SoC + Linux + a software runtime + an IEC 61131-3 control app**
-(see [PLC / SPS Projects](/guide/plc)).
-The **runtime** is what defines the device — it provides the IEC engine, the
-Modbus / OPC UA / EtherNet/IP servers, and the WebVisu. This page tracks the
-runtime ecosystems Certifai may encounter.
-
-We do **not** aim to support every runtime up front. Certifai supports the
-**CODESYS family** today; everything else is a **watch-list** — when a customer
-shows up using one, we add the parser/support for it then. The dynamic OT probe
-(Modbus / OPC UA / EtherNet/IP) is **vendor-agnostic** and works regardless of
-the runtime.
-
-## Support status
-
-| Status | Meaning |
-| --- | --- |
-| ✅ **Supported** | Static analysis works today (control-logic SAST + library/runtime SBOM + CVE). |
-| 🟡 **Covered via CODESYS** | A rebranded CODESYS runtime — our CODESYS parsing applies (may need minor per-vendor tweaks). |
-| 🔭 **Watch-list** | Own project format — we add a format parser when a customer needs it. The dynamic OT probe already applies. |
-| 🧪 **Test-bench** | A free runtime we use to *reconstruct and dynamically test* a device (see epic: provision-and-test). |
-
-## 1. CODESYS and rebranded CODESYS (the largest slice)
-
-Much of the market licenses the CODESYS runtime and rebrands the IDE. If a
-customer "doesn't use CODESYS", they often do — under another name.
-
-| Product / vendor | Based on | Status |
-| --- | --- | --- |
-| **CODESYS** (3S-Smart Software Solutions) | CODESYS | ✅ Supported |
-| Schneider **EcoStruxure Machine Expert** (ex-SoMachine) | CODESYS | 🟡 Covered via CODESYS |
-| **WAGO** e!COCKPIT / PFC controllers | CODESYS | 🟡 Covered via CODESYS |
-| **ABB** AC500 / Automation Builder | CODESYS | 🟡 Covered via CODESYS |
-| **Bosch Rexroth** ctrlX / IndraLogic | CODESYS | 🟡 Covered via CODESYS |
-| **Eaton** XSoft-CODESYS, **KEBA** KeStudio, Berghof, Kontron, Festo (CPX-E), IFM, Turck, … | CODESYS | 🟡 Covered via CODESYS |
-
-## 2. Other embeddable IEC 61131-3 runtime toolkits
-
-Same model as CODESYS (an OEM licenses a runtime + IDE and bakes it into a
-device), but with **different project formats and libraries**.
-
-| Toolkit | Vendor | Status |
-| --- | --- | --- |
-| **ProConOS / MULTIPROG** | Phoenix Contact / KW-Software | 🔭 Watch-list |
-| **ISaGRAF** (also does IEC 61499) | Rockwell | 🔭 Watch-list |
-| **straton** | COPA-DATA | 🔭 Watch-list |
-| **logi.CAD** | logi.cals | 🔭 Watch-list |
-
-## 3. Fully proprietary ecosystems (own runtime + IDE + protocols)
-
-Static analysis here needs a **per-vendor project parser**; the **dynamic OT
-probe still works** (they speak Modbus / OPC UA / EtherNet/IP, plus vendor
-protocols like S7comm / CIP).
-
-| Ecosystem | Vendor | Notes | Status |
-| --- | --- | --- | --- |
-| **TIA Portal / STEP 7** (S7-1200/1500), S7-1500 **Software Controller**, **Virtual PLC** | Siemens | Largest install base; the soft/virtual variants are Linux/container | 🔭 Watch-list |
-| **Studio 5000** (ControlLogix / CompactLogix) | Rockwell / Allen-Bradley | Strong in North America | 🔭 Watch-list |
-| **TwinCAT 3** | Beckhoff | Genuine PC-based control on Windows / TwinCAT-BSD; IEC 61131-3 **+ C++ + Simulink** | 🔭 Watch-list |
-| **Automation Studio** | B&R (ABB) | Own Automation Runtime | 🔭 Watch-list |
-| **GX Works** (MELSEC) | Mitsubishi | | 🔭 Watch-list |
-| **Sysmac Studio** (NX / NJ) | Omron | | 🔭 Watch-list |
-| **Proficy Machine Edition** (PACSystems) | Emerson / GE | | 🔭 Watch-list |
-
-## 4. Linux-native / containerized soft-PLC (the direction of travel)
-
-| Product | Vendor | Notes | Status |
-| --- | --- | --- | --- |
-| **PLCnext** | Phoenix Contact | Open, Linux-based; native runtime is eCLR (not CODESYS), but can also run CODESYS as an app | 🔭 Watch-list |
-| **ctrlX** | Bosch Rexroth | Ubuntu-core, app-store model (CODESYS runtime inside) | 🟡 Covered via CODESYS |
-| **Virtual PLC** / **CODESYS Virtual Control** | Siemens / CODESYS | Containerized PLCs (Docker / K8s) | 🟡 / 🔭 |
-
-## 5. Open-source runtimes (free — our test-bench substrates)
-
-Used to **reconstruct and dynamically test** a customer device without touching
-their network (provision-and-test).
-
-| Runtime | Standard | Notes | Status |
-| --- | --- | --- | --- |
-| **OpenPLC** | IEC 61131-3 | Modbus-centric, education/small automation; uses MatIEC | 🧪 Test-bench (current) |
-| **Beremiz + MatIEC** | IEC 61131-3 | Fuller open-source IDE; compiles ST/IL → C. Natural fidelity step-up from OpenPLC | 🧪 Test-bench (candidate) |
-| **Eclipse 4diac (FORTE)** | IEC **61499** | Distributed, event-driven — a *different paradigm* from 61131-3's scan cycle | 🔭 Watch-list |
-| **ProView** | — | Open-source process control + SCADA | 🔭 Watch-list |
-
-## How we add support for a new runtime
-
-- **Static (SAST / SBOM):** needs a parser for that runtime's **project format**
-  (and its library/package convention). This is the per-vendor work.
-- **Dynamic (ICS probe / DAST):** already **vendor-agnostic** — it targets the
-  device's OT ports and WebVisu, not the runtime's file format. So a brand-new
-  ecosystem still gets dynamic coverage on day one.
-
-::: tip Rule of thumb
-Confirm whether a "non-CODESYS" controller is actually a **rebranded CODESYS**
-runtime (Section 1) before assuming new work — most of the long tail is.
-:::

examples/plc-demo/conveyor.xml

@@ -1,36 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<!-- Demo PLCopen project — conveyor sorter. Deliberately vulnerable. -->
-<project xmlns="http://www.plcopen.org/xml/tc6_0201">
-  <types>
-    <pous>
-      <pou name="ConveyorCtrl" pouType="program">
-        <interface>
-          <localVars>
-            <variable name="AdminPwd">
-              <type><string/></type>
-              <initialValue><simpleValue value="password"/></initialValue>
-            </variable>
-            <variable name="Belt">
-              <type>
-                <array>
-                  <dimension lower="0" upper="3"/>
-                  <baseType><INT/></baseType>
-                </array>
-              </type>
-            </variable>
-          </localVars>
-          <inputVars>
-            <variable name="Slot"><type><INT/></type></variable>
-          </inputVars>
-        </interface>
-        <body>
-          <ST>
-            <xhtml xmlns="http://www.w3.org/1999/xhtml">Belt[Slot] := 1;
-Ftp_Send(HOST := '192.168.1.5', PORT := 21, ENCRYPT := FALSE);
-</xhtml>
-          </ST>
-        </body>
-      </pou>
-    </pous>
-  </types>
-</project>

examples/plc-demo/pump_fbd.xml

@@ -1,56 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<!-- Function Block Diagram (FBD) POU in PLCopen TC6 XML form. Demonstrates that
-     the scanner analyses graphical logic, not just Structured Text: the same
-     defects (cleartext Modbus master on 502, a hardcoded HMI password, a safety
-     enable driven FALSE) are here wired as blocks and in/out variables. -->
-<project xmlns="http://www.plcopen.org/xml/tc6_0201">
-  <types>
-    <pous>
-      <pou name="PumpFbdCtrl" pouType="functionBlock">
-        <interface>
-          <inputVars>
-            <variable name="HmiPassword"><type><string/></type></variable>
-            <variable name="Safety_Enable"><type><BOOL/></type></variable>
-            <variable name="ServerIp"><type><string/></type></variable>
-          </inputVars>
-        </interface>
-        <body>
-          <FBD>
-            <!-- Modbus/TCP master: cleartext (AUTH := FALSE) on port 502 -->
-            <inVariable localId="1"><expression>'10.20.0.5'</expression><connectionPointOut/></inVariable>
-            <inVariable localId="2"><expression>502</expression><connectionPointOut/></inVariable>
-            <inVariable localId="3"><expression>FALSE</expression><connectionPointOut/></inVariable>
-            <block localId="10" typeName="Modbus_TCP_Master">
-              <inputVariables>
-                <variable formalParameter="IP">
-                  <connectionPointIn><connection refLocalId="1"/></connectionPointIn>
-                </variable>
-                <variable formalParameter="PORT">
-                  <connectionPointIn><connection refLocalId="2"/></connectionPointIn>
-                </variable>
-                <variable formalParameter="AUTH">
-                  <connectionPointIn><connection refLocalId="3"/></connectionPointIn>
-                </variable>
-              </inputVariables>
-              <outputVariables/>
-            </block>
-
-            <!-- Hardcoded HMI password wired into an output -->
-            <inVariable localId="20"><expression>'admin123'</expression><connectionPointOut/></inVariable>
-            <outVariable localId="21">
-              <expression>HmiPassword</expression>
-              <connectionPointIn><connection refLocalId="20"/></connectionPointIn>
-            </outVariable>
-
-            <!-- Safety enable driven FALSE in logic -->
-            <inVariable localId="30"><expression>FALSE</expression><connectionPointOut/></inVariable>
-            <outVariable localId="31">
-              <expression>Safety_Enable</expression>
-              <connectionPointIn><connection refLocalId="30"/></connectionPointIn>
-            </outVariable>
-          </FBD>
-        </body>
-      </pou>
-    </pous>
-  </types>
-</project>

examples/plc-demo/pump_station.st

@@ -1,57 +0,0 @@
-(*
- * Demo PLC program — pump-station control (IEC 61131-3 Structured Text).
- *
- * Deliberately vulnerable, for the compliance-scanner PLC control-logic demo.
- * Each issue below is flagged by pipeline::plc::rules.
- *)
-
-FUNCTION_BLOCK PumpStationCtrl
-VAR_INPUT
-    OperatorCmd   : INT;        (* HMI command index — untrusted *)
-    FlowSetpoint  : REAL;
-END_VAR
-VAR_OUTPUT
-    PumpSpeed     : REAL;
-    Fault         : BOOL;
-END_VAR
-VAR
-    HmiPassword     : STRING := 'admin123';        (* hardcoded + default credential *)
-    ApiKey          : STRING := 'sk_live_9c1f2a';   (* hardcoded secret *)
-    PumpProfiles    : ARRAY[0..7] OF REAL;
-    Safety_Enable   : BOOL := TRUE;
-    Watchdog_Kick   : INT := 1;
-    MeasuredFlow    : REAL;
-    ScaleFactor     : REAL;
-    i               : INT;
-END_VAR
-
-    (* Operator can index the profile table with an unvalidated command. *)
-    PumpSpeed := PumpProfiles[OperatorCmd];
-
-    (* Divisor is a live process value that can read zero on a stopped line. *)
-    ScaleFactor := FlowSetpoint / MeasuredFlow;
-
-    (* Safety interlock disabled straight from application logic. *)
-    IF OperatorCmd = 99 THEN
-        Safety_Enable := FALSE;
-        Watchdog_Kick := 0;
-    END_IF;
-
-    (* Unauthenticated Modbus/TCP link on the cleartext OT port. *)
-    Modbus_TCP_Connect(IP := '10.10.5.20', PORT := 502, AUTH := FALSE, PASSWORD := 'plc');
-
-    (* Unstructured jump around the fault handler. *)
-    IF MeasuredFlow > 1000.0 THEN
-        JMP trip;
-    END_IF;
-
-    (* A correctly guarded division — must NOT be flagged. *)
-    IF ScaleFactor <> 0.0 THEN
-        PumpSpeed := PumpSpeed / ScaleFactor;
-    END_IF;
-
-    RETURN;
-trip:
-    Fault := TRUE;
-    PumpSpeed := 0.0;
-END_FUNCTION_BLOCK