test(plc): add realistic OpenPLC-style traffic-light sample

Second demo fixture (public-sample shape) to complement the all-rules
pump_station.st: a timed pedestrian-crossing state machine adapted from
the OpenPLC traffic-light example, extended with a SCADA/Modbus uplink and
a maintenance override. Mostly sound control logic with three planted,
field-realistic defects (hardcoded SCADA password, cleartext Modbus master,
maintenance mode that drops the pedestrian safety permit).

The regression test asserts the scanner surfaces those defects while staying
quiet on the guarded duty-cycle division and the JMP-free CASE machine —
demonstrating low false positives on real-world-shaped code.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

.gitea/workflows/ci.yml

@@ -29,10 +29,13 @@ env:
   CARGO_NET_RETRY: "10"
   CARGO_HTTP_MULTIPLEXING: "false"
 
-# Cancel in-progress runs for the same branch/PR
+# Cancel superseded PR runs, but NEVER cancel main-branch runs — those build and
+# deploy per-service images, and cancelling one merge's deploy when the next
+# merge lands leaves a service un-deployed (as happened between two back-to-back
+# merges). So cancel-in-progress only for pull_request events.
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
-  cancel-in-progress: true
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
 
 jobs:
   # ---------------------------------------------------------------------------
@@ -191,13 +194,18 @@ jobs:
       image: docker:27-cli
     steps:
       - name: Build, push and trigger orca redeploy
+        env:
+          # PAT for fetching the private tramiton-core git dependency during the
+          # image build (injected as a BuildKit secret, never baked into a layer).
+          TRAMITON_FETCH_TOKEN: ${{ secrets.TRAMITON_FETCH_TOKEN }}
         run: |
           apk add --no-cache git curl openssl
           git init && git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
           git fetch --depth=1 origin "${GITHUB_SHA}" && git checkout FETCH_HEAD
           IMAGE=registry.meghsakha.com/compliance-agent
           echo "${{ secrets.REGISTRY_PASSWORD }}" | docker login registry.meghsakha.com -u "${{ secrets.REGISTRY_USERNAME }}" --password-stdin
-          docker build -f Dockerfile.agent -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
+          DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN \
+            -f Dockerfile.agent -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
           docker push "$IMAGE:latest" && docker push "$IMAGE:${GITHUB_SHA}"
           PAYLOAD=$(printf '{"ref":"refs/heads/main","repository":{"full_name":"sharang/compliance-scanner-agent"},"head_commit":{"id":"%s","message":"deploy agent"}}' "${GITHUB_SHA}")
           SIG=$(printf '%s' "$PAYLOAD" | openssl dgst -sha256 -hmac "${{ secrets.ORCA_WEBHOOK_SECRET }}" | awk '{print $2}')
@@ -212,13 +220,16 @@ jobs:
       image: docker:27-cli
     steps:
       - name: Build, push and trigger orca redeploy
+        env:
+          TRAMITON_FETCH_TOKEN: ${{ secrets.TRAMITON_FETCH_TOKEN }}
         run: |
           apk add --no-cache git curl openssl
           git init && git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
           git fetch --depth=1 origin "${GITHUB_SHA}" && git checkout FETCH_HEAD
           IMAGE=registry.meghsakha.com/compliance-dashboard
           echo "${{ secrets.REGISTRY_PASSWORD }}" | docker login registry.meghsakha.com -u "${{ secrets.REGISTRY_USERNAME }}" --password-stdin
-          docker build -f Dockerfile.dashboard -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
+          DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN \
+            -f Dockerfile.dashboard -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
           docker push "$IMAGE:latest" && docker push "$IMAGE:${GITHUB_SHA}"
           PAYLOAD=$(printf '{"ref":"refs/heads/main","repository":{"full_name":"sharang/compliance-scanner-agent"},"head_commit":{"id":"%s","message":"deploy dashboard"}}' "${GITHUB_SHA}")
           SIG=$(printf '%s' "$PAYLOAD" | openssl dgst -sha256 -hmac "${{ secrets.ORCA_WEBHOOK_SECRET }}" | awk '{print $2}')
@@ -254,13 +265,16 @@ jobs:
       image: docker:27-cli
     steps:
       - name: Build, push and trigger orca redeploy
+        env:
+          TRAMITON_FETCH_TOKEN: ${{ secrets.TRAMITON_FETCH_TOKEN }}
         run: |
           apk add --no-cache git curl openssl
           git init && git remote add origin "${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}.git"
           git fetch --depth=1 origin "${GITHUB_SHA}" && git checkout FETCH_HEAD
           IMAGE=registry.meghsakha.com/compliance-mcp
           echo "${{ secrets.REGISTRY_PASSWORD }}" | docker login registry.meghsakha.com -u "${{ secrets.REGISTRY_USERNAME }}" --password-stdin
-          docker build -f Dockerfile.mcp -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
+          DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN \
+            -f Dockerfile.mcp -t "$IMAGE:latest" -t "$IMAGE:${GITHUB_SHA}" .
           docker push "$IMAGE:latest" && docker push "$IMAGE:${GITHUB_SHA}"
           PAYLOAD=$(printf '{"ref":"refs/heads/main","repository":{"full_name":"sharang/compliance-scanner-agent"},"head_commit":{"id":"%s","message":"deploy mcp"}}' "${GITHUB_SHA}")
           SIG=$(printf '%s' "$PAYLOAD" | openssl dgst -sha256 -hmac "${{ secrets.ORCA_WEBHOOK_SECRET }}" | awk '{print $2}')

Cargo.lock

@@ -679,6 +679,7 @@ dependencies = [
  "rand 0.9.2",
  "regex",
  "reqwest",
+ "roxmltree",
  "secrecy",
  "serde",
  "serde_json",
@@ -693,6 +694,8 @@ dependencies = [
  "tracing",
  "tracing-subscriber",
  "tramiton-core",
+ "tramiton-repro",
+ "tramiton-sbom",
  "urlencoding",
  "uuid",
  "walkdir",
@@ -3767,6 +3770,15 @@ dependencies = [
  "syn",
 ]
 
+[[package]]
+name = "object"
+version = "0.36.7"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "62948e14d923ea95ea2c7c86c71013138b66525b86bdc08d2dcc262bdb497b87"
+dependencies = [
+ "memchr",
+]
+
 [[package]]
 name = "octocrab"
 version = "0.44.1"
@@ -4617,6 +4629,12 @@ dependencies = [
  "syn",
 ]
 
+[[package]]
+name = "roxmltree"
+version = "0.20.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "6c20b6793b5c2fa6553b250154b78d6d0db37e72700ae35fad9387a46f487c97"
+
 [[package]]
 name = "rust-stemmers"
 version = "1.2.0"
@@ -5204,7 +5222,7 @@ version = "0.8.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c1c97747dbf44bb1ca44a561ece23508e99cb592e862f22222dcf42f51d1e451"
 dependencies = [
- "heck 0.4.1",
+ "heck 0.5.0",
  "proc-macro2",
  "quote",
  "syn",
@@ -6139,8 +6157,8 @@ dependencies = [
 
 [[package]]
 name = "tramiton-core"
-version = "0.4.0"
+version = "0.4.1"
-source = "git+ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git?tag=v0.4.0#e3dc1bf7027a2f6d7b1fe43043d6dfa887ce4af3"
+source = "git+ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git?tag=v0.4.1#ae4fc1376279f9edb9882605b20877335e7ba8ba"
 dependencies = [
  "serde",
  "tempfile",
@@ -6149,6 +6167,34 @@ dependencies = [
  "walkdir",
 ]
 
+[[package]]
+name = "tramiton-repro"
+version = "0.4.1"
+source = "git+ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git?tag=v0.4.1#ae4fc1376279f9edb9882605b20877335e7ba8ba"
+dependencies = [
+ "serde",
+ "serde_json",
+ "sha2",
+ "tempfile",
+ "thiserror 1.0.69",
+ "toml",
+ "tramiton-core",
+ "walkdir",
+]
+
+[[package]]
+name = "tramiton-sbom"
+version = "0.4.1"
+source = "git+ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git?tag=v0.4.1#ae4fc1376279f9edb9882605b20877335e7ba8ba"
+dependencies = [
+ "object",
+ "serde",
+ "serde_json",
+ "sha2",
+ "tramiton-core",
+ "tramiton-repro",
+]
+
 [[package]]
 name = "tree-sitter"
 version = "0.24.7"

Dockerfile.agent

@@ -2,7 +2,22 @@ FROM rust:1.94-bookworm AS builder
 
 WORKDIR /app
 COPY . .
-RUN cargo build --release -p compliance-agent
+# compliance-agent depends on the private tramiton-core git repo. Authenticate
+# the fetch with a PAT passed as a BuildKit secret (never baked into a layer).
+# Build with: DOCKER_BUILDKIT=1 docker build --secret id=tramiton_token,env=TRAMITON_FETCH_TOKEN ...
+RUN --mount=type=secret,id=tramiton_token \
+    if [ -s /run/secrets/tramiton_token ]; then \
+      git config --global \
+        url."https://sharang:$(cat /run/secrets/tramiton_token)@gitea.meghsakha.com/".insteadOf \
+        "ssh://git@gitea.meghsakha.com:22222/"; \
+    fi && \
+    CARGO_NET_GIT_FETCH_WITH_CLI=true cargo build --release -p compliance-agent
+
+# A throwaway stage that packs a real nix store (store paths + the validity DB)
+# into a compressed bootstrap tarball. Only the tarball is copied into the final
+# image, so we don't carry a raw /nix copy layer.
+FROM nixos/nix:latest AS nixseed
+RUN tar -C / -czf /nix-bootstrap.tar.gz nix
 
 FROM debian:bookworm-slim
 RUN apt-get update && apt-get install -y ca-certificates libssl3 git curl python3 python3-pip npm golang-go php-cli && rm -rf /var/lib/apt/lists/*
@@ -31,7 +46,30 @@ RUN pip3 install --break-system-packages semgrep
 # Install ruff for Python linting
 RUN pip3 install --break-system-packages ruff
 
+# Real nix for the tramiton reproducible-build firmware SBOM.
+#
+# nix-portable's proot fallback can't run here: user namespaces are blocked by
+# the container's default seccomp/apparmor profile, and orca exposes no way to
+# relax it. So ship a *real* nix and disable its build sandbox
+# (`sandbox = false`) — a plain gcc/make firmware build needs no user namespace,
+# so it runs fine under the locked-down profile with no proot involved.
+#
+# The store is shipped as a bootstrap tarball and seeded onto /nix at first
+# start (see docker/agent-entrypoint.sh), so a persistent /nix volume survives
+# redeploys. A missing/broken nix just falls back to the analysis-only SBOM.
+COPY --from=nixseed /nix-bootstrap.tar.gz /opt/nix-bootstrap.tar.gz
+ENV PATH="/nix/var/nix/profiles/default/bin:${PATH}"
+RUN mkdir -p /etc/nix && printf '%s\n' \
+      'experimental-features = nix-command flakes' \
+      'sandbox = false' \
+      'build-users-group =' \
+      'substituters = https://cache.nixos.org' \
+      'trusted-public-keys = cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=' \
+      > /etc/nix/nix.conf
+
 COPY --from=builder /app/target/release/compliance-agent /usr/local/bin/compliance-agent
+COPY docker/agent-entrypoint.sh /usr/local/bin/agent-entrypoint.sh
+RUN chmod +x /usr/local/bin/agent-entrypoint.sh
 
 # Copy documentation for the help chat assistant
 COPY --from=builder /app/README.md /app/README.md
@@ -43,5 +81,6 @@ RUN mkdir -p /data/compliance-scanner/ssh
 
 EXPOSE 3001 3002
 
-ENTRYPOINT ["compliance-agent"]
+# Seeds /nix (fresh volume) from the bootstrap tarball, then runs the agent.
+ENTRYPOINT ["/usr/local/bin/agent-entrypoint.sh"]
 

Dockerfile.dashboard

@@ -7,7 +7,16 @@ ARG DOCS_URL=/docs
 WORKDIR /app
 COPY . .
 ENV DOCS_URL=${DOCS_URL}
-RUN dx build --release --package compliance-dashboard
+# compliance-agent (a workspace member) depends on the private tramiton-core git
+# repo, so the workspace resolve needs it even to build the dashboard.
+# Authenticate the fetch with a PAT passed as a BuildKit secret.
+RUN --mount=type=secret,id=tramiton_token \
+    if [ -s /run/secrets/tramiton_token ]; then \
+      git config --global \
+        url."https://sharang:$(cat /run/secrets/tramiton_token)@gitea.meghsakha.com/".insteadOf \
+        "ssh://git@gitea.meghsakha.com:22222/"; \
+    fi && \
+    CARGO_NET_GIT_FETCH_WITH_CLI=true dx build --release --package compliance-dashboard
 
 FROM debian:bookworm-slim
 RUN apt-get update && apt-get install -y ca-certificates libssl3 && rm -rf /var/lib/apt/lists/*

Dockerfile.mcp

@@ -2,7 +2,16 @@ FROM rust:1.94-bookworm AS builder
 
 WORKDIR /app
 COPY . .
-RUN cargo build --release -p compliance-mcp
+# compliance-agent (a workspace member) depends on the private tramiton-core git
+# repo, so the workspace resolve needs it even to build the mcp binary.
+# Authenticate the fetch with a PAT passed as a BuildKit secret.
+RUN --mount=type=secret,id=tramiton_token \
+    if [ -s /run/secrets/tramiton_token ]; then \
+      git config --global \
+        url."https://sharang:$(cat /run/secrets/tramiton_token)@gitea.meghsakha.com/".insteadOf \
+        "ssh://git@gitea.meghsakha.com:22222/"; \
+    fi && \
+    CARGO_NET_GIT_FETCH_WITH_CLI=true cargo build --release -p compliance-mcp
 
 FROM debian:bookworm-slim
 RUN apt-get update && apt-get install -y ca-certificates libssl3 && rm -rf /var/lib/apt/lists/*

compliance-agent/Cargo.toml

@@ -14,7 +14,12 @@ compliance-dast = { path = "../compliance-dast" }
 # Same-company IP, used directly (not via CLI) so the whole tramiton suite is
 # available to the onboarding classifier. NOTE: CI must be able to fetch this
 # private repo (see the git-auth step in .gitea/workflows/ci.yml).
-tramiton-core = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.0" }
+tramiton-core = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.1" }
+# tramiton-repro drives the reproducible build (NixBackend seal_and_build) that
+# yields a sealed lock; `libraries_from_inputs` is the analysis-only fallback.
+tramiton-repro = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.1" }
+# tramiton-sbom renders the bill of materials from a sealed lock (+ binary SCA).
+tramiton-sbom = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.1" }
 serde = { workspace = true }
 serde_json = { workspace = true }
 tokio = { workspace = true }
@@ -37,6 +42,8 @@ tokio-cron-scheduler = "0.13"
 dotenvy = "0.15"
 hmac = "0.12"
 walkdir = "2"
+# Read-only XML tree parsing for PLCopen project files (POU extraction).
+roxmltree = "0.20"
 base64 = "0.22"
 urlencoding = "2"
 futures-util = "0.3"

compliance-agent/src/agent.rs

@@ -63,7 +63,22 @@ impl ComplianceAgent {
         let db = self.db_pool.for_tenant_id(tenant_id).await?;
         let orchestrator =
             PipelineOrchestrator::new(self.config.clone(), db, self.llm.clone(), self.http.clone());
-        orchestrator.run(repo_id, trigger).await
+        orchestrator.run_target(repo_id, trigger).await
+    }
+
+    /// Alias for [`Self::run_scan`] — every scan runs the unified onboarded-target
+    /// pipeline. Kept as a distinct name for the `/targets/{id}/scan` endpoint's
+    /// intent.
+    pub async fn run_target_scan(
+        &self,
+        tenant_id: &str,
+        target_id: &str,
+        trigger: compliance_core::models::ScanTrigger,
+    ) -> Result<(), crate::error::AgentError> {
+        let db = self.db_pool.for_tenant_id(tenant_id).await?;
+        let orchestrator =
+            PipelineOrchestrator::new(self.config.clone(), db, self.llm.clone(), self.http.clone());
+        orchestrator.run_target(target_id, trigger).await
     }
 
     /// Run a PR review: scan the diff and post review comments.
@@ -76,16 +91,19 @@ impl ComplianceAgent {
         head_sha: &str,
     ) -> Result<(), crate::error::AgentError> {
         let db = self.db_pool.for_tenant_id(tenant_id).await?;
-        let repo = db
+        let oid = mongodb::bson::oid::ObjectId::parse_str(repo_id)
-            .repositories()
+            .map_err(|e| crate::error::AgentError::Other(e.to_string()))?;
-            .find_one(mongodb::bson::doc! {
+        let target = db
-                "_id": mongodb::bson::oid::ObjectId::parse_str(repo_id)
+            .onboarded_targets()
-                    .map_err(|e| crate::error::AgentError::Other(e.to_string()))?
+            .find_one(mongodb::bson::doc! { "_id": oid })
-            })
             .await?
             .ok_or_else(|| {
-                crate::error::AgentError::Other(format!("Repository {repo_id} not found"))
+                crate::error::AgentError::Other(format!("Target {repo_id} not found"))
             })?;
+        let code = target.code_artifact().ok_or_else(|| {
+            crate::error::AgentError::Other(format!("Target {repo_id} has no code artifact"))
+        })?;
+        let repo = crate::pipeline::repo_view::RepoView::from_target(&target, code);
 
         let orchestrator =
             PipelineOrchestrator::new(self.config.clone(), db, self.llm.clone(), self.http.clone());

compliance-agent/src/api/handlers/chat.rs

@@ -146,7 +146,7 @@ pub async fn build_embeddings(
     let agent_clone = (*agent).clone();
     tokio::spawn(async move {
         let repo = match db
-            .repositories()
+            .onboarded_targets()
             .find_one(doc! { "_id": mongodb::bson::oid::ObjectId::parse_str(&repo_id).ok() })
             .await
         {
@@ -194,14 +194,22 @@ pub async fn build_embeddings(
                 }
             };
 
+        let code = match repo.code_artifact() {
+            Some(c) => c,
+            None => {
+                tracing::error!("Target {repo_id} has no code artifact for embedding build");
+                return;
+            }
+        };
+        let view = crate::pipeline::repo_view::RepoView::from_target(&repo, code);
         let creds = crate::pipeline::git::RepoCredentials {
             ssh_key_path: Some(agent_clone.config.ssh_key_path.clone()),
-            auth_token: repo.auth_token.clone(),
+            auth_token: view.auth_token.clone(),
-            auth_username: repo.auth_username.clone(),
+            auth_username: view.auth_username.clone(),
         };
         let git_ops =
             crate::pipeline::git::GitOps::new(&agent_clone.config.git_clone_base_path, creds);
-        let repo_path = match git_ops.clone_or_fetch(&repo.git_url, &repo.name) {
+        let repo_path = match git_ops.clone_or_fetch(&view.git_url, &view.name) {
             Ok(p) => p,
             Err(e) => {
                 tracing::error!("Failed to clone repo for embedding build: {e}");

compliance-agent/src/api/handlers/graph.rs

@@ -255,7 +255,7 @@ pub async fn get_file_content(
 
     // Look up the repository to get repo name
     let repo = db
-        .repositories()
+        .onboarded_targets()
         .find_one(doc! { "_id": mongodb::bson::oid::ObjectId::parse_str(&repo_id).ok() })
         .await
         .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
@@ -317,7 +317,7 @@ pub async fn trigger_build(
     let agent_clone = (*agent).clone();
     tokio::spawn(async move {
         let repo = match db
-            .repositories()
+            .onboarded_targets()
             .find_one(doc! { "_id": mongodb::bson::oid::ObjectId::parse_str(&repo_id).ok() })
             .await
         {
@@ -328,14 +328,22 @@ pub async fn trigger_build(
             }
         };
 
+        let code = match repo.code_artifact() {
+            Some(c) => c,
+            None => {
+                tracing::error!("Target {repo_id} has no code artifact for graph build");
+                return;
+            }
+        };
+        let view = crate::pipeline::repo_view::RepoView::from_target(&repo, code);
         let creds = crate::pipeline::git::RepoCredentials {
             ssh_key_path: Some(agent_clone.config.ssh_key_path.clone()),
-            auth_token: repo.auth_token.clone(),
+            auth_token: view.auth_token.clone(),
-            auth_username: repo.auth_username.clone(),
+            auth_username: view.auth_username.clone(),
         };
         let git_ops =
             crate::pipeline::git::GitOps::new(&agent_clone.config.git_clone_base_path, creds);
-        let repo_path = match git_ops.clone_or_fetch(&repo.git_url, &repo.name) {
+        let repo_path = match git_ops.clone_or_fetch(&view.git_url, &view.name) {
             Ok(p) => p,
             Err(e) => {
                 tracing::error!("Failed to clone repo for graph build: {e}");

compliance-agent/src/api/handlers/health.rs

@@ -10,6 +10,18 @@ pub async fn health() -> Json<serde_json::Value> {
     Json(serde_json::json!({ "status": "ok" }))
 }
 
+/// GET /api/v1/settings/ssh-public-key — the agent's SSH deploy public key,
+/// for adding as a read-only deploy key on private git targets.
+#[tracing::instrument(skip_all)]
+pub async fn get_ssh_public_key(
+    axum::extract::Extension(agent): AgentExt,
+) -> Result<Json<serde_json::Value>, axum::http::StatusCode> {
+    let public_path = format!("{}.pub", agent.config.ssh_key_path);
+    let public_key =
+        std::fs::read_to_string(&public_path).map_err(|_| axum::http::StatusCode::NOT_FOUND)?;
+    Ok(Json(serde_json::json!({ "public_key": public_key.trim() })))
+}
+
 #[tracing::instrument(skip_all)]
 pub async fn stats_overview(
     axum::extract::Extension(agent): AgentExt,
@@ -19,7 +31,7 @@ pub async fn stats_overview(
     let db = &db;
 
     let total_repositories = db
-        .repositories()
+        .onboarded_targets()
         .count_documents(doc! {})
         .await
         .unwrap_or(0);

compliance-agent/src/api/handlers/mod.rs

@@ -9,9 +9,9 @@ pub mod help_chat;
 pub mod issues;
 pub mod mcp_tokens;
 pub mod notifications;
+pub mod onboarding;
 pub mod pentest_handlers;
 pub use pentest_handlers as pentest;
-pub mod repos;
 pub mod sbom;
 pub mod scans;
 
@@ -20,6 +20,5 @@ pub use dto::*;
 pub use findings::*;
 pub use health::*;
 pub use issues::*;
-pub use repos::*;
 pub use sbom::*;
 pub use scans::*;

compliance-agent/src/api/handlers/onboarding.rs

@@ -0,0 +1,504 @@
+//! Onboarding API — CRUD for unified targets, artifact add, classification, and
+//! the scan-applicability matrix. The wizard (and future integrations) drive
+//! onboarding through these endpoints.
+
+use std::collections::HashMap;
+use std::sync::Arc;
+
+use axum::extract::{Extension, Path, Query};
+use axum::http::StatusCode;
+use axum::Json;
+use mongodb::bson::{doc, oid::ObjectId, to_bson};
+use serde::{Deserialize, Serialize};
+
+use compliance_core::models::{
+    Artifact, ArtifactKind, ComplianceProfile, OnboardedTarget, PlcFormat, TargetScanConfig,
+    TargetType,
+};
+use compliance_core::scan_matrix::{applicable_scans, supports_pentest};
+use compliance_core::tenant_ctx::TenantCtx;
+
+use crate::agent::ComplianceAgent;
+use crate::classify::{classify_target, MockFirmwareDetector};
+
+use super::dto::tenant_db;
+use super::{collect_cursor_async, ApiResponse, PaginationParams};
+
+type AgentExt = Extension<Arc<ComplianceAgent>>;
+
+/// A client-supplied artifact spec. The server builds the [`Artifact`] (and its
+/// id) from it, so clients never set internal fields.
+#[derive(Deserialize)]
+pub struct ArtifactInput {
+    pub kind: ArtifactKind,
+    pub source_ref: String,
+    #[serde(default)]
+    pub branch: Option<String>,
+    #[serde(default)]
+    pub plc_format: Option<PlcFormat>,
+}
+
+impl ArtifactInput {
+    fn build(&self) -> Artifact {
+        let s = self.source_ref.clone();
+        match self.kind {
+            ArtifactKind::GitRepo => {
+                Artifact::git_repo(s, self.branch.clone().unwrap_or_else(|| "main".to_string()))
+            }
+            ArtifactKind::LiveUrl => Artifact::live_url(s),
+            ArtifactKind::FirmwareImage => Artifact::firmware_image(s),
+            ArtifactKind::SourceArchive => Artifact::source_archive(s),
+            ArtifactKind::MobilePackage => Artifact::mobile_package(s),
+            ArtifactKind::ContainerImage => Artifact::container_image(s),
+            ArtifactKind::PlcProject => {
+                Artifact::plc_project(s, self.plc_format.unwrap_or(PlcFormat::PlcopenXml))
+            }
+            ArtifactKind::PlaintextDescription => Artifact::plaintext(s),
+        }
+    }
+}
+
+#[derive(Deserialize)]
+pub struct CreateTargetRequest {
+    pub name: String,
+    pub target_type: TargetType,
+    #[serde(default)]
+    pub description: Option<String>,
+    #[serde(default)]
+    pub artifacts: Vec<ArtifactInput>,
+}
+
+#[derive(Deserialize)]
+pub struct UpdateTargetRequest {
+    pub name: Option<String>,
+    pub target_type: Option<TargetType>,
+    pub scan_config: Option<TargetScanConfig>,
+    pub compliance_profile: Option<ComplianceProfile>,
+    pub scan_schedule: Option<String>,
+    /// Replace the target's artifacts wholesale (used by the dashboard editor).
+    #[serde(default)]
+    pub artifacts: Option<Vec<ArtifactInput>>,
+}
+
+/// One applicable-scan option, serialized for the wizard.
+#[derive(Serialize)]
+pub struct ScanOptionDto {
+    pub scan: String,
+    pub default_on: bool,
+    pub rationale: String,
+    pub required_artifact: Option<String>,
+    pub blocked_reason: Option<String>,
+}
+
+#[derive(Serialize)]
+pub struct ApplicableScansResponse {
+    pub scans: Vec<ScanOptionDto>,
+    pub pentest_supported: bool,
+}
+
+fn parse_oid(id: &str) -> Result<ObjectId, StatusCode> {
+    ObjectId::parse_str(id).map_err(|_| StatusCode::BAD_REQUEST)
+}
+
+/// GET /api/v1/targets — list onboarded targets (paginated).
+#[tracing::instrument(skip_all)]
+pub async fn list_targets(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Query(params): Query<PaginationParams>,
+) -> Result<Json<ApiResponse<Vec<OnboardedTarget>>>, StatusCode> {
+    let db = tenant_db(&agent, &tenant).await?;
+    let skip = (params.page.saturating_sub(1)) * params.limit as u64;
+    let total = db
+        .onboarded_targets()
+        .count_documents(doc! {})
+        .await
+        .unwrap_or(0);
+    let targets = match db
+        .onboarded_targets()
+        .find(doc! {})
+        .skip(skip)
+        .limit(params.limit)
+        .await
+    {
+        Ok(cursor) => collect_cursor_async(cursor).await,
+        Err(e) => {
+            tracing::warn!("Failed to fetch onboarded targets: {e}");
+            Vec::new()
+        }
+    };
+    Ok(Json(ApiResponse {
+        data: targets,
+        total: Some(total),
+        page: Some(params.page),
+    }))
+}
+
+/// POST /api/v1/targets — create an onboarded target.
+#[tracing::instrument(skip_all)]
+pub async fn create_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Json(req): Json<CreateTargetRequest>,
+) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
+    let mut target = OnboardedTarget::new(req.name, req.target_type);
+    target.description = req.description;
+    target.artifacts = req.artifacts.iter().map(ArtifactInput::build).collect();
+
+    let db = tenant_db(&agent, &tenant).await?;
+    let res = db
+        .onboarded_targets()
+        .insert_one(&target)
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+    target.id = res.inserted_id.as_object_id();
+    Ok(Json(ApiResponse {
+        data: target,
+        total: None,
+        page: None,
+    }))
+}
+
+/// GET /api/v1/targets/{id} — fetch one target.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn get_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    let target = db
+        .onboarded_targets()
+        .find_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
+        .ok_or(StatusCode::NOT_FOUND)?;
+    Ok(Json(ApiResponse {
+        data: target,
+        total: None,
+        page: None,
+    }))
+}
+
+/// PATCH /api/v1/targets/{id} — update mutable fields.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn update_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+    Json(req): Json<UpdateTargetRequest>,
+) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+
+    let mut set = doc! { "updated_at": mongodb::bson::DateTime::now() };
+    if let Some(name) = req.name {
+        set.insert("name", name);
+    }
+    if let Some(tt) = req.target_type {
+        set.insert(
+            "target_type",
+            to_bson(&tt).map_err(|_| StatusCode::BAD_REQUEST)?,
+        );
+    }
+    if let Some(sc) = req.scan_config {
+        set.insert(
+            "scan_config",
+            to_bson(&sc).map_err(|_| StatusCode::BAD_REQUEST)?,
+        );
+    }
+    if let Some(cp) = req.compliance_profile {
+        set.insert(
+            "compliance_profile",
+            to_bson(&cp).map_err(|_| StatusCode::BAD_REQUEST)?,
+        );
+    }
+    if let Some(ss) = req.scan_schedule {
+        set.insert("scan_schedule", ss);
+    }
+    if let Some(arts) = req.artifacts {
+        let built: Vec<Artifact> = arts.iter().map(ArtifactInput::build).collect();
+        set.insert(
+            "artifacts",
+            to_bson(&built).map_err(|_| StatusCode::BAD_REQUEST)?,
+        );
+    }
+
+    db.onboarded_targets()
+        .update_one(doc! { "_id": oid }, doc! { "$set": set })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+
+    get_target(Extension(agent), tenant, Path(id)).await
+}
+
+/// DELETE /api/v1/targets/{id} — remove the target and its findings/scans.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn delete_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    db.onboarded_targets()
+        .delete_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+    // Cascade all data keyed by repo_id == target id (best-effort).
+    let db = &db;
+    let _ = db.findings().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db.sbom_entries().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db.scan_runs().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db.cve_alerts().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db
+        .tracker_issues()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+    let _ = db.graph_nodes().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db.graph_edges().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db.graph_builds().delete_many(doc! { "repo_id": &id }).await;
+    let _ = db
+        .impact_analyses()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+    let _ = db
+        .code_embeddings()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+    let _ = db
+        .embedding_builds()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+
+    // DAST targets linked to this target, and all their downstream data.
+    if let Ok(mut cursor) = db.dast_targets().find(doc! { "repo_id": &id }).await {
+        use futures_util::StreamExt;
+        while let Some(Ok(dt)) = cursor.next().await {
+            let dast_target_id = dt.id.map(|oid| oid.to_hex()).unwrap_or_default();
+            if !dast_target_id.is_empty() {
+                cascade_delete_dast_target(db, &dast_target_id).await;
+            }
+        }
+    }
+
+    // Pentest sessions linked directly to this target (not via a DAST target).
+    if let Ok(mut cursor) = db.pentest_sessions().find(doc! { "repo_id": &id }).await {
+        use futures_util::StreamExt;
+        while let Some(Ok(session)) = cursor.next().await {
+            let session_id = session.id.map(|oid| oid.to_hex()).unwrap_or_default();
+            if !session_id.is_empty() {
+                let _ = db
+                    .attack_chain_nodes()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                let _ = db
+                    .pentest_messages()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                let _ = db
+                    .dast_findings()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+            }
+        }
+    }
+    let _ = db
+        .pentest_sessions()
+        .delete_many(doc! { "repo_id": &id })
+        .await;
+
+    Ok(Json(serde_json::json!({ "status": "deleted" })))
+}
+
+/// Delete a DAST target and everything downstream of it (pentest sessions +
+/// their attack chains / messages / findings, DAST scan runs + findings).
+async fn cascade_delete_dast_target(db: &crate::database::Database, target_id: &str) {
+    use futures_util::StreamExt;
+    if let Ok(mut cursor) = db
+        .pentest_sessions()
+        .find(doc! { "target_id": target_id })
+        .await
+    {
+        while let Some(Ok(session)) = cursor.next().await {
+            let session_id = session.id.map(|oid| oid.to_hex()).unwrap_or_default();
+            if !session_id.is_empty() {
+                let _ = db
+                    .attack_chain_nodes()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                let _ = db
+                    .pentest_messages()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+                let _ = db
+                    .dast_findings()
+                    .delete_many(doc! { "session_id": &session_id })
+                    .await;
+            }
+        }
+    }
+    let _ = db
+        .pentest_sessions()
+        .delete_many(doc! { "target_id": target_id })
+        .await;
+    let _ = db
+        .dast_findings()
+        .delete_many(doc! { "target_id": target_id })
+        .await;
+    let _ = db
+        .dast_scan_runs()
+        .delete_many(doc! { "target_id": target_id })
+        .await;
+    if let Ok(oid) = mongodb::bson::oid::ObjectId::parse_str(target_id) {
+        let _ = db.dast_targets().delete_one(doc! { "_id": oid }).await;
+    }
+}
+
+/// POST /api/v1/targets/{id}/artifacts — attach an artifact (by reference).
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn add_artifact(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+    Json(input): Json<ArtifactInput>,
+) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    let artifact = to_bson(&input.build()).map_err(|_| StatusCode::BAD_REQUEST)?;
+    db.onboarded_targets()
+        .update_one(
+            doc! { "_id": oid },
+            doc! { "$push": { "artifacts": artifact }, "$set": { "updated_at": mongodb::bson::DateTime::now() } },
+        )
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+    get_target(Extension(agent), tenant, Path(id)).await
+}
+
+/// GET /api/v1/targets/{id}/applicable-scans — the scan-applicability matrix.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn applicable_scans_for_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<ApiResponse<ApplicableScansResponse>>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    let target = db
+        .onboarded_targets()
+        .find_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
+        .ok_or(StatusCode::NOT_FOUND)?;
+
+    let scans = applicable_scans(&target)
+        .into_iter()
+        .map(|o| ScanOptionDto {
+            scan: o.scan.to_string(),
+            default_on: o.default_on,
+            rationale: o.rationale,
+            required_artifact: o.required_artifact.map(|k| k.to_string()),
+            blocked_reason: o.blocked_reason,
+        })
+        .collect();
+
+    Ok(Json(ApiResponse {
+        data: ApplicableScansResponse {
+            scans,
+            pentest_supported: supports_pentest(target.target_type),
+        },
+        total: None,
+        page: None,
+    }))
+}
+
+/// POST /api/v1/targets/{id}/detect — classify the target from its artifacts.
+///
+/// This is the lightweight pass: it classifies from artifact kinds without
+/// ingesting (cloning) sources, so it returns immediately. Deep detection (after
+/// ingest, with tramiton firmware analysis) is a follow-up background step.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn detect_target(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<ApiResponse<OnboardedTarget>>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    let mut target = db
+        .onboarded_targets()
+        .find_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
+        .ok_or(StatusCode::NOT_FOUND)?;
+
+    // No ingested working paths here → kind-based classification only; the mock
+    // firmware detector is never invoked (no firmware working path present).
+    let empty = HashMap::new();
+    let detector = MockFirmwareDetector { detection: None };
+    let classification = classify_target(&target, &empty, &detector)
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+
+    let classification_bson =
+        to_bson(&classification).map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+    db.onboarded_targets()
+        .update_one(
+            doc! { "_id": oid },
+            doc! { "$set": { "classification": classification_bson, "updated_at": mongodb::bson::DateTime::now() } },
+        )
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
+    target.classification = Some(classification);
+
+    Ok(Json(ApiResponse {
+        data: target,
+        total: None,
+        page: None,
+    }))
+}
+
+/// POST /api/v1/targets/{id}/scan — trigger a scan for the target.
+///
+/// Dispatches to the unified pipeline when `UNIFIED_PIPELINE` is set (else the
+/// legacy path). Runs in the background and returns immediately.
+#[tracing::instrument(skip_all, fields(target_id = %id))]
+pub async fn trigger_target_scan(
+    Extension(agent): AgentExt,
+    tenant: TenantCtx,
+    Path(id): Path<String>,
+) -> Result<Json<serde_json::Value>, StatusCode> {
+    let oid = parse_oid(&id)?;
+    let db = tenant_db(&agent, &tenant).await?;
+    // 404 if the target doesn't exist for this tenant.
+    if db
+        .onboarded_targets()
+        .find_one(doc! { "_id": oid })
+        .await
+        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
+        .is_none()
+    {
+        return Err(StatusCode::NOT_FOUND);
+    }
+
+    let agent_clone = (*agent).clone();
+    let tenant_id = tenant.0.tenant_id.clone();
+    tokio::spawn(async move {
+        // Always the unified target pipeline — this endpoint is about an
+        // onboarded target by construction, independent of the global
+        // `unified_pipeline` transition flag used by the legacy paths.
+        if let Err(e) = agent_clone
+            .run_target_scan(
+                &tenant_id,
+                &id,
+                compliance_core::models::ScanTrigger::Manual,
+            )
+            .await
+        {
+            tracing::error!("Manual target scan failed for {id}: {e}");
+        }
+    });
+    Ok(Json(serde_json::json!({ "status": "scan_triggered" })))
+}

compliance-agent/src/api/handlers/pentest_handlers/session.rs

@@ -113,14 +113,14 @@ pub async fn create_session(
         session.config = Some(config.clone());
         session.repo_id = target.repo_id.clone();
 
-        // Resolve repo_id from git_repo_url if provided
+        // Resolve repo_id (target id) from git_repo_url if provided
         if let Some(ref git_url) = config.git_repo_url {
-            if let Ok(Some(repo)) = db
+            if let Ok(Some(target)) = db
-                .repositories()
+                .onboarded_targets()
-                .find_one(doc! { "git_url": git_url })
+                .find_one(doc! { "artifacts.source_ref": git_url })
                 .await
             {
-                session.repo_id = repo.id.map(|oid| oid.to_hex());
+                session.repo_id = target.id.map(|oid| oid.to_hex());
             }
         }
 
@@ -380,17 +380,20 @@ pub async fn lookup_repo(
 ) -> Result<Json<ApiResponse<serde_json::Value>>, StatusCode> {
     let db = tenant_db(&agent, &tenant).await?;
     let repo = db
-        .repositories()
+        .onboarded_targets()
-        .find_one(doc! { "git_url": &params.url })
+        .find_one(doc! { "artifacts.source_ref": &params.url })
         .await
         .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
 
     let data = match repo {
-        Some(r) => serde_json::json!({
+        Some(r) => {
+            let git = r.code_artifact().and_then(|c| c.git.as_ref());
+            serde_json::json!({
                 "name": r.name,
-            "default_branch": r.default_branch,
+                "default_branch": git.map(|g| g.default_branch.clone()),
-            "last_scanned_commit": r.last_scanned_commit,
+                "last_scanned_commit": git.and_then(|g| g.last_scanned_commit.clone()),
-        }),
+            })
+        }
         None => serde_json::Value::Null,
     };
 

compliance-agent/src/api/handlers/repos.rs

@@ -1,339 +0,0 @@
-use axum::extract::{Extension, Path, Query};
-use axum::http::StatusCode;
-use axum::Json;
-use mongodb::bson::doc;
-
-use super::dto::*;
-use compliance_core::models::*;
-use compliance_core::tenant_ctx::TenantCtx;
-
-#[tracing::instrument(skip_all)]
-pub async fn list_repositories(
-    Extension(agent): AgentExt,
-    tenant: TenantCtx,
-    Query(params): Query<PaginationParams>,
-) -> ApiResult<Vec<TrackedRepository>> {
-    let db = tenant_db(&agent, &tenant).await?;
-    let db = &db;
-    let skip = (params.page.saturating_sub(1)) * params.limit as u64;
-    let total = db
-        .repositories()
-        .count_documents(doc! {})
-        .await
-        .unwrap_or(0);
-
-    let repos = match db
-        .repositories()
-        .find(doc! {})
-        .skip(skip)
-        .limit(params.limit)
-        .await
-    {
-        Ok(cursor) => collect_cursor_async(cursor).await,
-        Err(e) => {
-            tracing::warn!("Failed to fetch repositories: {e}");
-            Vec::new()
-        }
-    };
-
-    Ok(Json(ApiResponse {
-        data: repos,
-        total: Some(total),
-        page: Some(params.page),
-    }))
-}
-
-#[tracing::instrument(skip_all)]
-pub async fn add_repository(
-    Extension(agent): AgentExt,
-    tenant: TenantCtx,
-    Json(req): Json<AddRepositoryRequest>,
-) -> Result<Json<ApiResponse<TrackedRepository>>, (StatusCode, String)> {
-    // Validate repository access before saving
-    let creds = crate::pipeline::git::RepoCredentials {
-        ssh_key_path: Some(agent.config.ssh_key_path.clone()),
-        auth_token: req.auth_token.clone(),
-        auth_username: req.auth_username.clone(),
-    };
-
-    if let Err(e) = crate::pipeline::git::GitOps::test_access(&req.git_url, &creds) {
-        return Err((
-            StatusCode::BAD_REQUEST,
-            format!("Cannot access repository: {e}"),
-        ));
-    }
-
-    let mut repo = TrackedRepository::new(req.name, req.git_url);
-    repo.default_branch = req.default_branch;
-    repo.auth_token = req.auth_token;
-    repo.auth_username = req.auth_username;
-    repo.tracker_type = req.tracker_type;
-    repo.tracker_owner = req.tracker_owner;
-    repo.tracker_repo = req.tracker_repo;
-    repo.tracker_token = req.tracker_token;
-    repo.scan_schedule = req.scan_schedule;
-
-    let db = tenant_db(&agent, &tenant)
-        .await
-        .map_err(|s| (s, "failed to acquire tenant database".to_string()))?;
-    db.repositories().insert_one(&repo).await.map_err(|_| {
-        (
-            StatusCode::CONFLICT,
-            "Repository already exists".to_string(),
-        )
-    })?;
-
-    Ok(Json(ApiResponse {
-        data: repo,
-        total: None,
-        page: None,
-    }))
-}
-
-#[tracing::instrument(skip_all, fields(repo_id = %id))]
-pub async fn update_repository(
-    Extension(agent): AgentExt,
-    tenant: TenantCtx,
-    Path(id): Path<String>,
-    Json(req): Json<UpdateRepositoryRequest>,
-) -> Result<Json<serde_json::Value>, StatusCode> {
-    let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
-    let db = tenant_db(&agent, &tenant).await?;
-
-    let mut set_doc = doc! { "updated_at": mongodb::bson::DateTime::now() };
-
-    if let Some(name) = &req.name {
-        set_doc.insert("name", name);
-    }
-    if let Some(branch) = &req.default_branch {
-        set_doc.insert("default_branch", branch);
-    }
-    if let Some(token) = &req.auth_token {
-        set_doc.insert("auth_token", token);
-    }
-    if let Some(username) = &req.auth_username {
-        set_doc.insert("auth_username", username);
-    }
-    if let Some(tracker_type) = &req.tracker_type {
-        set_doc.insert("tracker_type", tracker_type.to_string());
-    }
-    if let Some(owner) = &req.tracker_owner {
-        set_doc.insert("tracker_owner", owner);
-    }
-    if let Some(repo) = &req.tracker_repo {
-        set_doc.insert("tracker_repo", repo);
-    }
-    if let Some(token) = &req.tracker_token {
-        set_doc.insert("tracker_token", token);
-    }
-    if let Some(schedule) = &req.scan_schedule {
-        set_doc.insert("scan_schedule", schedule);
-    }
-
-    let result = db
-        .repositories()
-        .update_one(doc! { "_id": oid }, doc! { "$set": set_doc })
-        .await
-        .map_err(|e| {
-            tracing::warn!("Failed to update repository: {e}");
-            StatusCode::INTERNAL_SERVER_ERROR
-        })?;
-
-    if result.matched_count == 0 {
-        return Err(StatusCode::NOT_FOUND);
-    }
-
-    Ok(Json(serde_json::json!({ "status": "updated" })))
-}
-
-#[tracing::instrument(skip_all)]
-pub async fn get_ssh_public_key(
-    Extension(agent): AgentExt,
-) -> Result<Json<serde_json::Value>, StatusCode> {
-    let public_path = format!("{}.pub", agent.config.ssh_key_path);
-    let public_key = std::fs::read_to_string(&public_path).map_err(|_| StatusCode::NOT_FOUND)?;
-    Ok(Json(serde_json::json!({ "public_key": public_key.trim() })))
-}
-
-#[tracing::instrument(skip_all, fields(repo_id = %id))]
-pub async fn trigger_scan(
-    Extension(agent): AgentExt,
-    tenant: TenantCtx,
-    Path(id): Path<String>,
-) -> Result<Json<serde_json::Value>, StatusCode> {
-    let agent_clone = (*agent).clone();
-    let tenant_id = tenant.0.tenant_id.clone();
-    tokio::spawn(async move {
-        if let Err(e) = agent_clone
-            .run_scan(&tenant_id, &id, ScanTrigger::Manual)
-            .await
-        {
-            tracing::error!("Manual scan failed for {id}: {e}");
-        }
-    });
-
-    Ok(Json(serde_json::json!({ "status": "scan_triggered" })))
-}
-
-/// Return the webhook secret for a repository (used by dashboard to display it)
-pub async fn get_webhook_config(
-    Extension(agent): AgentExt,
-    tenant: TenantCtx,
-    Path(id): Path<String>,
-) -> Result<Json<serde_json::Value>, StatusCode> {
-    let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
-    let db = tenant_db(&agent, &tenant).await?;
-    let repo = db
-        .repositories()
-        .find_one(doc! { "_id": oid })
-        .await
-        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?
-        .ok_or(StatusCode::NOT_FOUND)?;
-
-    let tracker_type = repo
-        .tracker_type
-        .as_ref()
-        .map(|t| t.to_string())
-        .unwrap_or_else(|| "gitea".to_string());
-
-    Ok(Json(serde_json::json!({
-        "webhook_secret": repo.webhook_secret,
-        "tracker_type": tracker_type,
-    })))
-}
-
-#[tracing::instrument(skip_all, fields(repo_id = %id))]
-pub async fn delete_repository(
-    Extension(agent): AgentExt,
-    tenant: TenantCtx,
-    Path(id): Path<String>,
-) -> Result<Json<serde_json::Value>, StatusCode> {
-    let oid = mongodb::bson::oid::ObjectId::parse_str(&id).map_err(|_| StatusCode::BAD_REQUEST)?;
-    let db = tenant_db(&agent, &tenant).await?;
-    let db = &db;
-
-    // Delete the repository
-    let result = db
-        .repositories()
-        .delete_one(doc! { "_id": oid })
-        .await
-        .map_err(|_| StatusCode::INTERNAL_SERVER_ERROR)?;
-
-    if result.deleted_count == 0 {
-        return Err(StatusCode::NOT_FOUND);
-    }
-
-    // Cascade delete all related data
-    let _ = db.findings().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db.sbom_entries().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db.scan_runs().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db.cve_alerts().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db
-        .tracker_issues()
-        .delete_many(doc! { "repo_id": &id })
-        .await;
-    let _ = db.graph_nodes().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db.graph_edges().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db.graph_builds().delete_many(doc! { "repo_id": &id }).await;
-    let _ = db
-        .impact_analyses()
-        .delete_many(doc! { "repo_id": &id })
-        .await;
-    let _ = db
-        .code_embeddings()
-        .delete_many(doc! { "repo_id": &id })
-        .await;
-    let _ = db
-        .embedding_builds()
-        .delete_many(doc! { "repo_id": &id })
-        .await;
-
-    // Cascade delete DAST targets linked to this repo, and all their downstream data
-    // (scan runs, findings, pentest sessions, attack chains, messages)
-    if let Ok(mut cursor) = db.dast_targets().find(doc! { "repo_id": &id }).await {
-        use futures_util::StreamExt;
-        while let Some(Ok(target)) = cursor.next().await {
-            let target_id = target.id.map(|oid| oid.to_hex()).unwrap_or_default();
-            if !target_id.is_empty() {
-                cascade_delete_dast_target(db, &target_id).await;
-            }
-        }
-    }
-
-    // Also delete pentest sessions linked directly to this repo (not via target)
-    if let Ok(mut cursor) = db.pentest_sessions().find(doc! { "repo_id": &id }).await {
-        use futures_util::StreamExt;
-        while let Some(Ok(session)) = cursor.next().await {
-            let session_id = session.id.map(|oid| oid.to_hex()).unwrap_or_default();
-            if !session_id.is_empty() {
-                let _ = db
-                    .attack_chain_nodes()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-                let _ = db
-                    .pentest_messages()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-                // Delete DAST findings produced by this session
-                let _ = db
-                    .dast_findings()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-            }
-        }
-    }
-    let _ = db
-        .pentest_sessions()
-        .delete_many(doc! { "repo_id": &id })
-        .await;
-
-    Ok(Json(serde_json::json!({ "status": "deleted" })))
-}
-
-/// Cascade-delete a DAST target and all its downstream data.
-async fn cascade_delete_dast_target(db: &crate::database::Database, target_id: &str) {
-    // Delete pentest sessions for this target (and their attack chains + messages)
-    if let Ok(mut cursor) = db
-        .pentest_sessions()
-        .find(doc! { "target_id": target_id })
-        .await
-    {
-        use futures_util::StreamExt;
-        while let Some(Ok(session)) = cursor.next().await {
-            let session_id = session.id.map(|oid| oid.to_hex()).unwrap_or_default();
-            if !session_id.is_empty() {
-                let _ = db
-                    .attack_chain_nodes()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-                let _ = db
-                    .pentest_messages()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-                let _ = db
-                    .dast_findings()
-                    .delete_many(doc! { "session_id": &session_id })
-                    .await;
-            }
-        }
-    }
-    let _ = db
-        .pentest_sessions()
-        .delete_many(doc! { "target_id": target_id })
-        .await;
-
-    // Delete DAST scan runs and their findings
-    let _ = db
-        .dast_findings()
-        .delete_many(doc! { "target_id": target_id })
-        .await;
-    let _ = db
-        .dast_scan_runs()
-        .delete_many(doc! { "target_id": target_id })
-        .await;
-
-    // Delete the target itself
-    if let Ok(oid) = mongodb::bson::oid::ObjectId::parse_str(target_id) {
-        let _ = db.dast_targets().delete_one(doc! { "_id": oid }).await;
-    }
-}

compliance-agent/src/api/handlers/sbom.rs

@@ -282,7 +282,7 @@ pub async fn license_summary(
             }
         })
         .collect();
-    summaries.sort_by(|a, b| b.count.cmp(&a.count));
+    summaries.sort_by_key(|s| std::cmp::Reverse(s.count));
 
     Ok(Json(ApiResponse {
         data: summaries,

compliance-agent/src/api/routes.rs

@@ -11,19 +11,32 @@ pub fn build_router() -> Router {
             "/api/v1/settings/ssh-public-key",
             get(handlers::get_ssh_public_key),
         )
-        .route("/api/v1/repositories", get(handlers::list_repositories))
+        // Unified onboarding targets (#131).
-        .route("/api/v1/repositories", post(handlers::add_repository))
         .route(
-            "/api/v1/repositories/{id}/scan",
+            "/api/v1/targets",
-            post(handlers::trigger_scan),
+            get(handlers::onboarding::list_targets).post(handlers::onboarding::create_target),
         )
         .route(
-            "/api/v1/repositories/{id}",
+            "/api/v1/targets/{id}",
-            delete(handlers::delete_repository).patch(handlers::update_repository),
+            get(handlers::onboarding::get_target)
+                .patch(handlers::onboarding::update_target)
+                .delete(handlers::onboarding::delete_target),
         )
         .route(
-            "/api/v1/repositories/{id}/webhook-config",
+            "/api/v1/targets/{id}/artifacts",
-            get(handlers::get_webhook_config),
+            post(handlers::onboarding::add_artifact),
+        )
+        .route(
+            "/api/v1/targets/{id}/applicable-scans",
+            get(handlers::onboarding::applicable_scans_for_target),
+        )
+        .route(
+            "/api/v1/targets/{id}/detect",
+            post(handlers::onboarding::detect_target),
+        )
+        .route(
+            "/api/v1/targets/{id}/scan",
+            post(handlers::onboarding::trigger_target_scan),
         )
         .route("/api/v1/findings", get(handlers::list_findings))
         .route("/api/v1/findings/{id}", get(handlers::get_finding))

compliance-agent/src/database.rs

@@ -179,6 +179,23 @@ impl DatabasePool {
             .collect())
     }
 
+    /// Tenant ids for every provisioned tenant database, derived by stripping
+    /// the `<prefix>_` from the database names. Skips the admin database
+    /// (`<prefix>__admin`). Hash-fallback names (very long tenant_ids) are lost
+    /// at the cluster level and cannot be recovered here — in practice tenant
+    /// ids are UUIDs and never hit that path. Used by the migration CLI's
+    /// `--all` mode.
+    pub async fn list_tenant_ids(&self) -> Result<Vec<String>, AgentError> {
+        let prefix = format!("{}_", self.db_prefix);
+        Ok(self
+            .list_tenant_db_names()
+            .await?
+            .into_iter()
+            .filter_map(|n| n.strip_prefix(&prefix).map(str::to_string))
+            .filter(|id| !id.starts_with('_'))
+            .collect())
+    }
+
     /// Drop the database for a specific tenant. Used by GDPR delete
     /// and tenant offboarding. Idempotent — dropping a non-existent
     /// database is a no-op at the driver level.
@@ -232,16 +249,6 @@ impl Database {
     }
 
     pub async fn ensure_indexes(&self) -> Result<(), AgentError> {
-        // repositories: unique git_url
-        self.repositories()
-            .create_index(
-                IndexModel::builder()
-                    .keys(doc! { "git_url": 1 })
-                    .options(IndexOptions::builder().unique(true).build())
-                    .build(),
-            )
-            .await?;
-
         // findings: unique fingerprint
         self.findings()
             .create_index(
@@ -462,10 +469,6 @@ impl Database {
         Ok(())
     }
 
-    pub fn repositories(&self) -> Collection<TrackedRepository> {
-        self.inner.collection("repositories")
-    }
-
     pub fn findings(&self) -> Collection<Finding> {
         self.inner.collection("findings")
     }
@@ -521,6 +524,13 @@ impl Database {
         self.inner.collection("onboarded_targets")
     }
 
+    /// A typed handle to an arbitrary collection by name. For bookkeeping
+    /// collections without a dedicated model (e.g. `schema_migrations`,
+    /// `onboarding_migration_log`).
+    pub fn collection_named<T: Send + Sync>(&self, name: &str) -> Collection<T> {
+        self.inner.collection(name)
+    }
+
     pub fn dast_scan_runs(&self) -> Collection<DastScanRun> {
         self.inner.collection("dast_scan_runs")
     }

compliance-agent/src/pipeline/firmware_sbom.rs

@@ -0,0 +1,152 @@
+//! Firmware SBOM via tramiton.
+//!
+//! Phase 2 (full, the default): drive a **reproducible build** with tramiton's
+//! `NixBackend` — `analyze` → `seal_and_build` → a sealed lock whose libraries
+//! are pinned and whose firmware artifact carries a content hash — then render
+//! the SBOM from the lock plus deep binary SCA of pre-compiled inputs. This is
+//! the complete bill of materials (toolchain + every fetched library + the
+//! firmware image), the same one `tramiton sbom` produces.
+//!
+//! Phase 1 fallback (analysis-only): when no nix backend is available or the
+//! build fails, fall back to the resolvable libraries + toolchain from the build
+//! plan alone (no build). A scan therefore always yields *something*, and a nix
+//! that can't run in the deployment never breaks a scan.
+
+use std::path::Path;
+
+use compliance_core::models::{SbomEntry, TargetType};
+use tramiton_repro::ReproBackend;
+use tramiton_sbom::ComponentKind;
+
+/// Whether firmware SBOM applies to this target family.
+pub fn is_firmware_target(target_type: TargetType) -> bool {
+    matches!(
+        target_type,
+        TargetType::FirmwareBareMetal | TargetType::FirmwareRtos | TargetType::EmbeddedLinuxYocto
+    )
+}
+
+/// Build SBOM entries for a firmware target from its source tree. Prefers a full
+/// reproducible build (sealed lock); falls back to analysis-only. Returns an
+/// empty vector when tramiton cannot even form a build plan.
+pub async fn firmware_sbom_entries(path: &Path, repo_id: &str) -> Vec<SbomEntry> {
+    let p = path.to_path_buf();
+    let repo = repo_id.to_string();
+    // The whole analyze → seal → build → render sequence is blocking (it shells
+    // out to nix), so keep it off the async runtime. Bound it: a firmware build
+    // that hangs must not wedge the scan (the orphaned task is abandoned).
+    let handle = tokio::task::spawn_blocking(move || build_sbom_blocking(&p, &repo));
+    match tokio::time::timeout(std::time::Duration::from_secs(900), handle).await {
+        Ok(Ok(entries)) => entries,
+        Ok(Err(e)) => {
+            tracing::warn!(repo_id, error = %e, "Firmware SBOM: task join error");
+            Vec::new()
+        }
+        Err(_) => {
+            tracing::warn!(repo_id, "Firmware SBOM: build exceeded 15m; skipping");
+            Vec::new()
+        }
+    }
+}
+
+fn build_sbom_blocking(path: &Path, repo_id: &str) -> Vec<SbomEntry> {
+    let repo = tramiton_core::Repo::new(path);
+    let plan = match tramiton_core::provider::analyze(&repo) {
+        Ok(Some(bp)) => bp,
+        Ok(None) => return Vec::new(),
+        Err(e) => {
+            tracing::warn!(repo_id, error = %e, "Firmware SBOM: tramiton analyze failed");
+            return Vec::new();
+        }
+    };
+
+    // Phase 2: reproducible build → sealed lock → complete SBOM.
+    if let Some(backend) = tramiton_repro::NixBackend::detect() {
+        match tramiton_repro::seal_and_build(&backend, &plan, path) {
+            Ok(lock) => {
+                let mut sbom = tramiton_sbom::Sbom::from_lock(&lock, repo_id);
+                // Deep binary SCA of any pre-compiled inputs in the tree.
+                sbom.components.extend(tramiton_sbom::binary::scan(path));
+                let entries = sbom_to_entries(&sbom, repo_id);
+                tracing::info!(
+                    repo_id,
+                    backend = backend.name(),
+                    count = entries.len(),
+                    "Firmware SBOM: sealed reproducible build"
+                );
+                return entries;
+            }
+            Err(e) => {
+                tracing::warn!(repo_id, error = %e, "Firmware SBOM: reproducible build failed; falling back to analysis-only")
+            }
+        }
+    } else {
+        tracing::info!(
+            repo_id,
+            "Firmware SBOM: no nix backend available; analysis-only SBOM"
+        );
+    }
+
+    // Phase 1 fallback: analysis-only (toolchain + resolvable libraries).
+    analysis_entries(&plan, repo_id)
+}
+
+/// Map a rendered [`tramiton_sbom::Sbom`] (primary firmware + components) into
+/// our [`SbomEntry`] rows. Source-file (`File`) components are dropped — they are
+/// build inputs, not a dependency inventory.
+fn sbom_to_entries(sbom: &tramiton_sbom::Sbom, repo_id: &str) -> Vec<SbomEntry> {
+    let mut entries = Vec::new();
+    if let Some(primary) = &sbom.primary {
+        entries.push(component_to_entry(primary, repo_id));
+    }
+    for c in &sbom.components {
+        if matches!(c.kind, ComponentKind::File) {
+            continue;
+        }
+        entries.push(component_to_entry(c, repo_id));
+    }
+    entries
+}
+
+fn component_to_entry(c: &tramiton_sbom::Component, repo_id: &str) -> SbomEntry {
+    let manager = match c.kind {
+        ComponentKind::Firmware => "firmware",
+        ComponentKind::Library => "library",
+        ComponentKind::Toolchain => "toolchain",
+        ComponentKind::File => "file",
+    };
+    let mut entry = SbomEntry::new(
+        repo_id.to_string(),
+        c.name.clone(),
+        c.version.clone().unwrap_or_default(),
+        manager.to_string(),
+    );
+    entry.purl = c.source.clone();
+    entry
+}
+
+/// Analysis-only components from the build plan: the cross-toolchain plus the
+/// resolvable fetched libraries, without a build.
+fn analysis_entries(bp: &tramiton_core::BuildPlan, repo_id: &str) -> Vec<SbomEntry> {
+    let mut entries = Vec::new();
+    if let Some(id) = bp.toolchain.id.clone() {
+        let version = bp.toolchain.version.clone().unwrap_or_default();
+        entries.push(SbomEntry::new(
+            repo_id.to_string(),
+            id,
+            version,
+            "toolchain".to_string(),
+        ));
+    }
+    for lib in tramiton_repro::lock::libraries_from_inputs(&bp.inputs) {
+        let mut entry = SbomEntry::new(
+            repo_id.to_string(),
+            lib.name,
+            lib.revision,
+            "library".to_string(),
+        );
+        entry.purl = lib.source;
+        entries.push(entry);
+    }
+    entries
+}

compliance-agent/src/pipeline/git.rs

@@ -80,7 +80,10 @@ impl GitOps {
 
     #[tracing::instrument(skip_all, fields(repo_name = %repo_name))]
     pub fn clone_or_fetch(&self, git_url: &str, repo_name: &str) -> Result<PathBuf, AgentError> {
-        let repo_path = self.base_path.join(repo_name);
+        // Names can contain slashes or other path-hostile characters (a target
+        // named after a repo path, say); collapse to one safe directory segment
+        // so the clone path never nests or breaks.
+        let repo_path = self.base_path.join(sanitize_repo_dir(repo_name));
 
         if repo_path.exists() {
             tracing::info!("fetching updates for existing repo");
@@ -135,7 +138,7 @@ impl GitOps {
     /// Build credentials from agent config + per-repo overrides
     pub fn make_repo_credentials(
         config: &compliance_core::AgentConfig,
-        repo: &compliance_core::models::TrackedRepository,
+        repo: &crate::pipeline::repo_view::RepoView,
     ) -> RepoCredentials {
         RepoCredentials {
             ssh_key_path: Some(config.ssh_key_path.clone()),
@@ -253,3 +256,46 @@ pub struct DiffFile {
     pub path: String,
     pub hunks: String,
 }
+
+/// Collapse a repository name into a single filesystem-safe directory segment.
+/// Names may carry slashes or other path-hostile characters (a target named
+/// after a repo path, for instance); those would otherwise nest or break the
+/// clone path, so map anything outside `[A-Za-z0-9._-]` to `_`.
+fn sanitize_repo_dir(name: &str) -> String {
+    let mapped: String = name
+        .chars()
+        .map(|c| {
+            if c.is_ascii_alphanumeric() || c == '-' || c == '_' || c == '.' {
+                c
+            } else {
+                '_'
+            }
+        })
+        .collect();
+    let trimmed = mapped.trim_matches(|c| c == '.' || c == '_');
+    if trimmed.is_empty() {
+        "repo".to_string()
+    } else {
+        trimmed.to_string()
+    }
+}
+
+#[cfg(test)]
+mod tests {
+    use super::sanitize_repo_dir;
+
+    #[test]
+    fn sanitizes_path_hostile_names() {
+        assert_eq!(
+            sanitize_repo_dir("zephyr-example-app"),
+            "zephyr-example-app"
+        );
+        assert_eq!(
+            sanitize_repo_dir("ChristianRinn/bare_metal_stm32f411xe"),
+            "ChristianRinn_bare_metal_stm32f411xe"
+        );
+        assert_eq!(sanitize_repo_dir("../../etc/passwd"), "etc_passwd");
+        assert_eq!(sanitize_repo_dir("a b:c"), "a_b_c");
+        assert_eq!(sanitize_repo_dir("///"), "repo");
+    }
+}

compliance-agent/src/pipeline/issue_creation.rs

@@ -1,5 +1,6 @@
 use mongodb::bson::doc;
 
+use crate::pipeline::repo_view::RepoView;
 use compliance_core::models::*;
 
 use super::orchestrator::{extract_base_url, PipelineOrchestrator};
@@ -10,7 +11,7 @@ use crate::trackers;
 impl PipelineOrchestrator {
     /// Build an issue tracker client from a repository's tracker configuration.
     /// Returns `None` if the repo has no tracker configured.
-    pub(super) fn build_tracker(&self, repo: &TrackedRepository) -> Option<TrackerDispatch> {
+    pub(super) fn build_tracker(&self, repo: &RepoView) -> Option<TrackerDispatch> {
         let tracker_type = repo.tracker_type.as_ref()?;
         // Per-repo token takes precedence, fall back to global config
         match tracker_type {
@@ -81,7 +82,7 @@ impl PipelineOrchestrator {
     #[tracing::instrument(skip_all, fields(repo_id = %repo_id))]
     pub(super) async fn create_tracker_issues(
         &self,
-        repo: &TrackedRepository,
+        repo: &RepoView,
         repo_id: &str,
         new_findings: &[Finding],
     ) -> Result<(), AgentError> {

compliance-agent/src/pipeline/mod.rs

@@ -1,6 +1,7 @@
 pub mod code_review;
 pub mod cve;
 pub mod dedup;
+pub mod firmware_sbom;
 pub mod git;
 pub mod gitleaks;
 mod graph_build;
@@ -8,7 +9,10 @@ mod issue_creation;
 pub mod lint;
 pub mod orchestrator;
 pub mod patterns;
+pub mod plan;
+pub mod plc;
 mod pr_review;
+pub mod repo_view;
 pub mod sbom;
 pub mod semgrep;
 mod tracker_dispatch;

compliance-agent/src/pipeline/orchestrator.rs

@@ -15,6 +15,8 @@ use crate::pipeline::git::GitOps;
 use crate::pipeline::gitleaks::GitleaksScanner;
 use crate::pipeline::lint::LintScanner;
 use crate::pipeline::patterns::{GdprPatternScanner, OAuthPatternScanner};
+use crate::pipeline::plan::build_scan_plan;
+use crate::pipeline::repo_view::RepoView;
 use crate::pipeline::sbom::SbomScanner;
 use crate::pipeline::semgrep::SemgrepScanner;
 
@@ -50,72 +52,8 @@ impl PipelineOrchestrator {
         }
     }
 
-    #[tracing::instrument(skip_all, fields(repo_id = %repo_id, trigger = ?trigger))]
-    pub async fn run(&self, repo_id: &str, trigger: ScanTrigger) -> Result<(), AgentError> {
-        // Look up the repository
-        let repo = self
-            .db
-            .repositories()
-            .find_one(doc! { "_id": mongodb::bson::oid::ObjectId::parse_str(repo_id).map_err(|e| AgentError::Other(e.to_string()))? })
-            .await?
-            .ok_or_else(|| AgentError::Other(format!("Repository {repo_id} not found")))?;
-
-        // Create scan run
-        let scan_run = ScanRun::new(repo_id.to_string(), trigger);
-        let insert = self.db.scan_runs().insert_one(&scan_run).await?;
-        let scan_run_id = insert
-            .inserted_id
-            .as_object_id()
-            .map(|id| id.to_hex())
-            .unwrap_or_default();
-
-        let result = self.run_pipeline(&repo, &scan_run_id).await;
-
-        // Update scan run status
-        match &result {
-            Ok(count) => {
-                self.db
-                    .scan_runs()
-                    .update_one(
-                        doc! { "_id": &insert.inserted_id },
-                        doc! {
-                            "$set": {
-                                "status": "completed",
-                                "current_phase": "completed",
-                                "new_findings_count": *count as i64,
-                                "completed_at": mongodb::bson::DateTime::now(),
-                            }
-                        },
-                    )
-                    .await?;
-            }
-            Err(e) => {
-                tracing::error!(repo_id, error = %e, "Scan pipeline failed");
-                self.db
-                    .scan_runs()
-                    .update_one(
-                        doc! { "_id": &insert.inserted_id },
-                        doc! {
-                            "$set": {
-                                "status": "failed",
-                                "error_message": e.to_string(),
-                                "completed_at": mongodb::bson::DateTime::now(),
-                            }
-                        },
-                    )
-                    .await?;
-            }
-        }
-
-        result.map(|_| ())
-    }
-
     #[tracing::instrument(skip_all, fields(repo_id = repo.name.as_str()))]
-    async fn run_pipeline(
+    async fn run_pipeline(&self, repo: &RepoView, scan_run_id: &str) -> Result<u32, AgentError> {
-        &self,
-        repo: &TrackedRepository,
-        scan_run_id: &str,
-    ) -> Result<u32, AgentError> {
         let repo_id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
 
         // Stage 0: Change detection
@@ -129,7 +67,6 @@ impl PipelineOrchestrator {
             return Ok(0);
         }
 
-        let current_sha = GitOps::get_head_sha(&repo_path)?;
         let mut all_findings: Vec<Finding> = Vec::new();
 
         // Stage 1: Semgrep SAST
@@ -395,20 +332,9 @@ impl PipelineOrchestrator {
             tracing::warn!("[{repo_id}] Issue creation failed: {e}");
         }
 
-        // Stage 7: Update repository
+        // The onboarded target's findings_count and the git artifact's
-        self.db
+        // last_scanned_commit watermark are persisted by `finalize_target` after
-            .repositories()
+        // `run_pipeline` returns.
-            .update_one(
-                doc! { "_id": repo.id },
-                doc! {
-                    "$set": {
-                        "last_scanned_commit": &current_sha,
-                        "updated_at": mongodb::bson::DateTime::now(),
-                    },
-                    "$inc": { "findings_count": new_count as i64 },
-                },
-            )
-            .await?;
 
         // Stage 8: DAST (async, optional — only if a DastTarget is configured)
         tracing::info!("[{repo_id}] Stage 8: Checking for DAST targets");
@@ -419,6 +345,371 @@ impl PipelineOrchestrator {
         Ok(new_count)
     }
 
+    /// Unified entry point (behind `UNIFIED_PIPELINE`): run a scan for an
+    /// `OnboardedTarget`. Mirrors [`Self::run`] but sources the target from
+    /// `onboarded_targets` and dispatches by the scan plan.
+    #[tracing::instrument(skip_all, fields(target_id = %target_id, trigger = ?trigger))]
+    pub async fn run_target(
+        &self,
+        target_id: &str,
+        trigger: ScanTrigger,
+    ) -> Result<(), AgentError> {
+        let oid = mongodb::bson::oid::ObjectId::parse_str(target_id)
+            .map_err(|e| AgentError::Other(e.to_string()))?;
+        let target = self
+            .db
+            .onboarded_targets()
+            .find_one(doc! { "_id": oid })
+            .await?
+            .ok_or_else(|| AgentError::Other(format!("Onboarded target {target_id} not found")))?;
+
+        let scan_run = ScanRun::new(target_id.to_string(), trigger);
+        let insert = self.db.scan_runs().insert_one(&scan_run).await?;
+        let scan_run_id = insert
+            .inserted_id
+            .as_object_id()
+            .map(|id| id.to_hex())
+            .unwrap_or_default();
+
+        let result = self.run_target_pipeline(&target, &scan_run_id).await;
+        match &result {
+            Ok(count) => {
+                self.db
+                    .scan_runs()
+                    .update_one(
+                        doc! { "_id": &insert.inserted_id },
+                        doc! { "$set": {
+                            "status": "completed",
+                            "current_phase": "completed",
+                            "new_findings_count": *count as i64,
+                            "completed_at": mongodb::bson::DateTime::now(),
+                        } },
+                    )
+                    .await?;
+                // Refresh the target's cached findings count. The shared pipeline
+                // (Stage 7) increments `repositories`, which the unified path does
+                // not use, so set the accurate total on the target itself.
+                let total = self
+                    .db
+                    .findings()
+                    .count_documents(doc! { "repo_id": target_id })
+                    .await
+                    .unwrap_or(*count as u64);
+                self.db
+                    .onboarded_targets()
+                    .update_one(
+                        doc! { "_id": oid },
+                        doc! { "$set": {
+                            "findings_count": total as i64,
+                            "updated_at": mongodb::bson::DateTime::now(),
+                        } },
+                    )
+                    .await?;
+            }
+            Err(e) => {
+                tracing::error!(target_id, error = %e, "Unified scan pipeline failed");
+                self.db
+                    .scan_runs()
+                    .update_one(
+                        doc! { "_id": &insert.inserted_id },
+                        doc! { "$set": {
+                            "status": "failed",
+                            "error_message": e.to_string(),
+                            "completed_at": mongodb::bson::DateTime::now(),
+                        } },
+                    )
+                    .await?;
+            }
+        }
+        result.map(|_| ())
+    }
+
+    /// Run the applicable scans for a target. For a code target this reuses the
+    /// full legacy pipeline over the code artifact (clone → SAST umbrella →
+    /// triage → persist → issues → DAST); firmware/PLC/mobile scanners are
+    /// follow-ups (#128/#129/#130). Returns the number of new findings.
+    async fn run_target_pipeline(
+        &self,
+        target: &OnboardedTarget,
+        scan_run_id: &str,
+    ) -> Result<u32, AgentError> {
+        let target_id = target.id.map(|id| id.to_hex()).unwrap_or_default();
+        let plan = build_scan_plan(target);
+        tracing::info!(
+            target_id = %target_id,
+            target_type = %target.target_type,
+            planned_steps = plan.steps.len(),
+            "Unified pipeline: scan plan built"
+        );
+
+        // Ingest + classify (tramiton for firmware) and store the detected type.
+        self.classify_and_store(target, &target_id, scan_run_id)
+            .await;
+        // Provision a DAST target from a LiveUrl artifact so DAST fires for
+        // wizard-created targets, not just migrated ones.
+        self.ensure_dast_target(target, &plan).await;
+
+        // PLC control-logic analysis for PLC/SPS targets (a PlcProject artifact).
+        if plan.has(ScanType::PlcControlLogic) {
+            return self.run_plc_scan(target, &target_id, scan_run_id).await;
+        }
+
+        match target.code_artifact() {
+            Some(code) if code.kind == ArtifactKind::GitRepo => {
+                let repo = RepoView::from_target(target, code);
+                let new_count = self.run_pipeline(&repo, scan_run_id).await?;
+                self.finalize_target(target, &repo, new_count).await?;
+                Ok(new_count)
+            }
+            Some(_) => {
+                tracing::warn!(
+                    target_id = %target_id,
+                    "Unified pipeline: source-archive scanning not yet wired; skipping"
+                );
+                Ok(0)
+            }
+            None => {
+                // No code to scan. Firmware/PLC/mobile static scanners land in
+                // #128/#129/#130; DAST for a running URL still works when a
+                // DastTarget row exists (migrated targets).
+                tracing::info!(
+                    target_id = %target_id,
+                    "Unified pipeline: no code artifact; attempting DAST only"
+                );
+                self.update_phase(scan_run_id, "dast_scanning").await;
+                self.maybe_trigger_dast(&target_id, scan_run_id).await;
+                Ok(0)
+            }
+        }
+    }
+
+    /// Analyze a PLC/SPS project (Structured Text / PLCopen XML) for
+    /// control-logic security issues and persist the new findings.
+    async fn run_plc_scan(
+        &self,
+        target: &OnboardedTarget,
+        target_id: &str,
+        scan_run_id: &str,
+    ) -> Result<u32, AgentError> {
+        tracing::info!(target_id, "[{target_id}] PLC control-logic analysis");
+        self.update_phase(scan_run_id, "plc_analysis").await;
+
+        let ctx = crate::ingest::IngestContext::from_config(&self.config, target_id);
+        let ingest_set = crate::ingest::ingest_all(target, &ctx)?;
+        let path = target
+            .first_of(ArtifactKind::PlcProject)
+            .and_then(|a| ingest_set.get(&a.id))
+            .and_then(|ia| ia.working_path.clone());
+        let Some(path) = path else {
+            tracing::warn!(target_id, "PLC scan: no ingested PLC project path");
+            return Ok(0);
+        };
+
+        let findings = crate::pipeline::plc::analyze_tree(&path, target_id);
+        tracing::info!(
+            target_id,
+            found = findings.len(),
+            "PLC control-logic analysis complete"
+        );
+
+        let mut new_count = 0u32;
+        for mut finding in findings {
+            finding.scan_run_id = Some(scan_run_id.to_string());
+            if self
+                .db
+                .findings()
+                .find_one(doc! { "fingerprint": &finding.fingerprint })
+                .await?
+                .is_none()
+            {
+                self.db.findings().insert_one(&finding).await?;
+                new_count += 1;
+            }
+        }
+        Ok(new_count)
+    }
+
+    /// Ingest the target's artifacts, classify (tramiton for firmware/RTOS/Yocto,
+    /// heuristics otherwise), and store the detected classification on the target.
+    /// Best-effort — never fails the scan.
+    async fn classify_and_store(
+        &self,
+        target: &OnboardedTarget,
+        target_id: &str,
+        scan_run_id: &str,
+    ) {
+        self.update_phase(scan_run_id, "classification").await;
+        let ctx = crate::ingest::IngestContext::from_config(&self.config, target_id);
+        let ingest_set = match crate::ingest::ingest_all(target, &ctx) {
+            Ok(set) => set,
+            Err(e) => {
+                tracing::warn!(target_id, error = %e, "Unified pipeline: ingest for classification failed");
+                return;
+            }
+        };
+        let working_paths = ingest_set.working_paths();
+        match crate::classify::classify_target(
+            target,
+            &working_paths,
+            &crate::classify::TramitonNative,
+        )
+        .await
+        {
+            Ok(classification) => {
+                tracing::info!(
+                    target_id,
+                    suggested = %classification.suggested,
+                    "Unified pipeline: classified target"
+                );
+                if let (Some(oid), Ok(bson)) = (target.id, mongodb::bson::to_bson(&classification))
+                {
+                    let _ = self
+                        .db
+                        .onboarded_targets()
+                        .update_one(
+                            doc! { "_id": oid },
+                            doc! { "$set": { "classification": bson } },
+                        )
+                        .await;
+                }
+            }
+            Err(e) => {
+                tracing::warn!(target_id, error = %e, "Unified pipeline: classification failed")
+            }
+        }
+
+        // Analysis-based firmware SBOM: for embedded targets, derive components
+        // (resolved libraries + cross-toolchain) from tramiton's build-plan
+        // analysis over the already-ingested source — no build, no binary
+        // upload. Best-effort; empty when no build plan forms.
+        if crate::pipeline::firmware_sbom::is_firmware_target(target.target_type) {
+            if let Some(code) = target.code_artifact() {
+                if let Some(path) = working_paths.get(&code.id) {
+                    let entries =
+                        crate::pipeline::firmware_sbom::firmware_sbom_entries(path, target_id)
+                            .await;
+                    if !entries.is_empty() {
+                        let _ = self
+                            .db
+                            .sbom_entries()
+                            .delete_many(doc! { "repo_id": target_id })
+                            .await;
+                        for entry in &entries {
+                            let filter = doc! {
+                                "repo_id": &entry.repo_id,
+                                "name": &entry.name,
+                                "version": &entry.version,
+                            };
+                            if let Ok(d) = mongodb::bson::to_document(entry) {
+                                let _ = self
+                                    .db
+                                    .sbom_entries()
+                                    .update_one(filter, doc! { "$set": d })
+                                    .upsert(true)
+                                    .await;
+                            }
+                        }
+                        tracing::info!(
+                            target_id,
+                            count = entries.len(),
+                            "Firmware SBOM: stored components from tramiton analysis"
+                        );
+                    }
+                }
+            }
+        }
+    }
+
+    /// If the target has a `LiveUrl` artifact and DAST is planned, provision a
+    /// `DastTarget` (keyed by `repo_id` = target id) so the existing DAST trigger
+    /// fires for wizard-created targets. Idempotent.
+    async fn ensure_dast_target(
+        &self,
+        target: &OnboardedTarget,
+        plan: &crate::pipeline::plan::ScanPlan,
+    ) {
+        if !plan.has(ScanType::Dast) {
+            return;
+        }
+        let (Some(url), Some(oid)) = (target.live_url(), target.id) else {
+            return;
+        };
+        let target_id = oid.to_hex();
+        if self
+            .db
+            .dast_targets()
+            .find_one(doc! { "repo_id": &target_id })
+            .await
+            .ok()
+            .flatten()
+            .is_some()
+        {
+            return; // already provisioned
+        }
+        let kind = url
+            .web
+            .as_ref()
+            .map(|w| w.target_kind.clone())
+            .unwrap_or(DastTargetType::WebApp);
+        let mut dast = DastTarget::new(target.name.clone(), url.source_ref.clone(), kind);
+        dast.repo_id = Some(target_id);
+        if let Some(web) = &url.web {
+            dast.excluded_paths = web.excluded_paths.clone();
+            dast.max_crawl_depth = web.max_crawl_depth;
+            dast.rate_limit = web.rate_limit;
+            dast.allow_destructive = web.allow_destructive;
+        }
+        if let Some(auth) = &url.auth {
+            dast.auth_config = Some(DastAuthConfig {
+                method: auth.method.clone(),
+                login_url: auth.login_url.clone(),
+                username: auth.username.clone(),
+                password: None,
+                token: auth.secret.clone(),
+                headers: auth.headers.clone(),
+            });
+        }
+        if let Err(e) = self.db.dast_targets().insert_one(&dast).await {
+            tracing::warn!(error = %e, "Unified pipeline: failed to provision DAST target");
+        }
+    }
+
+    /// Sync the onboarded-target document after a scan: bump `findings_count`
+    /// and advance the git artifact's `last_scanned_commit` watermark.
+    async fn finalize_target(
+        &self,
+        target: &OnboardedTarget,
+        repo: &RepoView,
+        new_count: u32,
+    ) -> Result<(), AgentError> {
+        let oid = match target.id {
+            Some(id) => id,
+            None => return Ok(()),
+        };
+        self.db
+            .onboarded_targets()
+            .update_one(
+                doc! { "_id": oid },
+                doc! {
+                    "$inc": { "findings_count": new_count as i64 },
+                    "$set": { "updated_at": mongodb::bson::DateTime::now() },
+                },
+            )
+            .await?;
+
+        let repo_path = std::path::Path::new(&self.config.git_clone_base_path).join(&repo.name);
+        if let (Ok(sha), Some(code)) = (GitOps::get_head_sha(&repo_path), target.code_artifact()) {
+            self.db
+                .onboarded_targets()
+                .update_one(
+                    doc! { "_id": oid, "artifacts.id": &code.id },
+                    doc! { "$set": { "artifacts.$.git.last_scanned_commit": sha } },
+                )
+                .await?;
+        }
+        Ok(())
+    }
+
     pub(super) async fn update_phase(&self, scan_run_id: &str, phase: &str) {
         if let Ok(oid) = mongodb::bson::oid::ObjectId::parse_str(scan_run_id) {
             let _ = self
@@ -460,3 +751,50 @@ pub(super) fn extract_base_url(git_url: &str) -> Option<String> {
         None
     }
 }
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use compliance_core::models::{
+        Artifact, ArtifactAuth, IssueTrackerConfig, TargetType, TrackerType,
+    };
+
+    #[test]
+    fn repo_view_preserves_id_git_auth_and_tracker() {
+        let mut target = OnboardedTarget::new("acme".to_string(), TargetType::WebApp);
+        target.id = Some(mongodb::bson::oid::ObjectId::new());
+        target.findings_count = 3;
+        target.scan_config.issue_tracker = Some(IssueTrackerConfig {
+            tracker_type: Some(TrackerType::Gitea),
+            owner: Some("acme".to_string()),
+            repo: Some("web".to_string()),
+            token: Some("tt".to_string()),
+        });
+
+        let mut artifact = Artifact::git_repo("https://git/acme.git", "develop");
+        if let Some(git) = artifact.git.as_mut() {
+            git.last_scanned_commit = Some("abc123".to_string());
+        }
+        artifact.auth = Some(ArtifactAuth {
+            method: "token".to_string(),
+            username: Some("bob".to_string()),
+            secret: Some("pat".to_string()),
+            ..Default::default()
+        });
+        target.artifacts.push(artifact);
+
+        let code = target.code_artifact().expect("code artifact");
+        let repo = RepoView::from_target(&target, code);
+
+        assert_eq!(repo.id, target.id); // preserved
+        assert_eq!(repo.git_url, "https://git/acme.git");
+        assert_eq!(repo.default_branch, "develop");
+        assert_eq!(repo.last_scanned_commit.as_deref(), Some("abc123"));
+        assert_eq!(repo.auth_token.as_deref(), Some("pat"));
+        assert_eq!(repo.auth_username.as_deref(), Some("bob"));
+        assert_eq!(repo.tracker_type, Some(TrackerType::Gitea));
+        assert_eq!(repo.tracker_owner.as_deref(), Some("acme"));
+        assert_eq!(repo.findings_count, 3);
+    }
+}

compliance-agent/src/pipeline/plan.rs

@@ -0,0 +1,195 @@
+//! The scan plan.
+//!
+//! [`build_scan_plan`] turns an [`OnboardedTarget`] into the concrete ordered
+//! list of scans to run, each bound to the artifact it consumes. It intersects
+//! the scan-applicability matrix ([`applicable_scans`]) with the target's
+//! `scan_config` overrides: a scan runs when its required artifact is present and
+//! it is either on by default or explicitly enabled, and is not explicitly
+//! disabled. This is the decision engine the unified pipeline (`run_target`)
+//! executes.
+
+use compliance_core::models::{Artifact, ArtifactKind, OnboardedTarget, ScanPhase, ScanType};
+use compliance_core::scan_matrix::applicable_scans;
+
+/// One scan to run, bound to the artifact it operates on.
+#[derive(Debug, Clone, PartialEq)]
+pub struct ScanStep {
+    /// The scan to run.
+    pub scan_type: ScanType,
+    /// The pipeline phase to report while it runs.
+    pub phase: ScanPhase,
+    /// The id of the artifact this scan consumes ([`Artifact::id`]).
+    pub artifact_id: String,
+}
+
+/// The ordered set of scans to run for a target.
+#[derive(Debug, Clone, Default, PartialEq)]
+pub struct ScanPlan {
+    /// The scans, in matrix order.
+    pub steps: Vec<ScanStep>,
+}
+
+impl ScanPlan {
+    /// Whether the plan contains a step for the given scan type.
+    pub fn has(&self, scan: ScanType) -> bool {
+        self.steps.iter().any(|s| s.scan_type == scan)
+    }
+
+    /// Whether the plan is empty (nothing to run).
+    pub fn is_empty(&self) -> bool {
+        self.steps.is_empty()
+    }
+}
+
+/// Build the scan plan for a target: matrix defaults ∩ `scan_config`, each scan
+/// bound to the artifact it consumes. Scans whose required artifact is absent, or
+/// that are disabled, or off-by-default and not explicitly enabled, are dropped.
+pub fn build_scan_plan(target: &OnboardedTarget) -> ScanPlan {
+    let enabled = &target.scan_config.enabled_scans;
+    let disabled = &target.scan_config.disabled_scans;
+
+    let mut steps = Vec::new();
+    for option in applicable_scans(target) {
+        // Required artifact missing → not runnable.
+        if option.blocked_reason.is_some() {
+            continue;
+        }
+        // Explicit opt-out wins.
+        if disabled.contains(&option.scan) {
+            continue;
+        }
+        // Run if on by default, or explicitly enabled.
+        if !option.default_on && !enabled.contains(&option.scan) {
+            continue;
+        }
+        let Some(artifact) = resolve_artifact(target, option.required_artifact) else {
+            continue;
+        };
+        steps.push(ScanStep {
+            scan_type: option.scan,
+            phase: phase_for(option.scan),
+            artifact_id: artifact.id.clone(),
+        });
+    }
+    ScanPlan { steps }
+}
+
+/// Resolve the artifact a scan consumes. A "code" requirement (represented by
+/// `GitRepo`) is satisfied by a git repo *or* a source archive.
+fn resolve_artifact(target: &OnboardedTarget, required: Option<ArtifactKind>) -> Option<&Artifact> {
+    match required {
+        Some(ArtifactKind::GitRepo) => target.code_artifact(),
+        Some(kind) => target.first_of(kind),
+        None => target.code_artifact().or_else(|| target.artifacts.first()),
+    }
+}
+
+/// The pipeline phase reported while a given scan runs.
+fn phase_for(scan: ScanType) -> ScanPhase {
+    match scan {
+        ScanType::Sast => ScanPhase::Sast,
+        ScanType::Sbom => ScanPhase::SbomGeneration,
+        ScanType::Cve => ScanPhase::CveScanning,
+        ScanType::Gdpr | ScanType::OAuth => ScanPhase::PatternScanning,
+        ScanType::SecretDetection => ScanPhase::SecretDetection,
+        ScanType::Lint => ScanPhase::LintScanning,
+        ScanType::CodeReview => ScanPhase::CodeReview,
+        ScanType::Graph => ScanPhase::GraphBuilding,
+        ScanType::Dast => ScanPhase::DastScanning,
+        ScanType::FirmwareStatic => ScanPhase::FirmwareStatic,
+        ScanType::PlcControlLogic => ScanPhase::PlcAnalysis,
+        ScanType::MobileStatic => ScanPhase::MobileStatic,
+        ScanType::ContainerScan => ScanPhase::ContainerScan,
+    }
+}
+
+#[cfg(test)]
+#[allow(clippy::expect_used, clippy::unwrap_used)]
+mod tests {
+    use super::*;
+    use compliance_core::models::{PlcFormat, TargetType};
+
+    fn target(target_type: TargetType, artifacts: Vec<Artifact>) -> OnboardedTarget {
+        let mut t = OnboardedTarget::new("t".to_string(), target_type);
+        t.artifacts = artifacts;
+        t
+    }
+
+    fn step_for<'a>(plan: &'a ScanPlan, scan: ScanType) -> Option<&'a ScanStep> {
+        plan.steps.iter().find(|s| s.scan_type == scan)
+    }
+
+    #[test]
+    fn webapp_with_code_and_url_runs_sast_and_dast_bound_to_the_right_artifacts() {
+        let code = Artifact::git_repo("https://git/x", "main");
+        let url = Artifact::live_url("https://x");
+        let (code_id, url_id) = (code.id.clone(), url.id.clone());
+        let t = target(TargetType::WebApp, vec![code, url]);
+
+        let plan = build_scan_plan(&t);
+        let sast = step_for(&plan, ScanType::Sast).expect("sast planned");
+        assert_eq!(sast.artifact_id, code_id);
+        assert_eq!(sast.phase, ScanPhase::Sast);
+        let dast = step_for(&plan, ScanType::Dast).expect("dast planned");
+        assert_eq!(dast.artifact_id, url_id);
+    }
+
+    #[test]
+    fn webapp_without_url_omits_dast() {
+        let t = target(TargetType::WebApp, vec![Artifact::git_repo("u", "main")]);
+        let plan = build_scan_plan(&t);
+        assert!(plan.has(ScanType::Sast));
+        assert!(!plan.has(ScanType::Dast));
+    }
+
+    #[test]
+    fn code_scan_binds_to_source_archive_when_no_git_repo() {
+        let arc = Artifact::source_archive("src.zip");
+        let arc_id = arc.id.clone();
+        let t = target(TargetType::BackendService, vec![arc]);
+        let plan = build_scan_plan(&t);
+        let sast = step_for(&plan, ScanType::Sast).expect("sast planned");
+        assert_eq!(sast.artifact_id, arc_id);
+    }
+
+    #[test]
+    fn firmware_sbom_and_cve_bind_to_the_firmware_image() {
+        let fw = Artifact::firmware_image("fw.bin");
+        let fw_id = fw.id.clone();
+        let t = target(TargetType::FirmwareBareMetal, vec![fw]);
+        let plan = build_scan_plan(&t);
+        let sbom = step_for(&plan, ScanType::Sbom).expect("sbom planned");
+        assert_eq!(sbom.artifact_id, fw_id);
+        assert!(step_for(&plan, ScanType::FirmwareStatic).is_some());
+        assert!(!plan.has(ScanType::Dast));
+    }
+
+    #[test]
+    fn plc_plans_only_control_logic() {
+        let plc = Artifact::plc_project("p.xml", PlcFormat::PlcopenXml);
+        let t = target(TargetType::PlcSps, vec![plc]);
+        let plan = build_scan_plan(&t);
+        assert_eq!(plan.steps.len(), 1);
+        assert_eq!(plan.steps[0].scan_type, ScanType::PlcControlLogic);
+        assert_eq!(plan.steps[0].phase, ScanPhase::PlcAnalysis);
+    }
+
+    #[test]
+    fn disabled_scan_is_dropped_and_off_by_default_can_be_enabled() {
+        let mut t = target(TargetType::WebApp, vec![Artifact::git_repo("u", "main")]);
+        t.scan_config.disabled_scans = vec![ScanType::Lint];
+        // CodeReview is off by default for web; enable it explicitly.
+        t.scan_config.enabled_scans = vec![ScanType::CodeReview];
+        let plan = build_scan_plan(&t);
+        assert!(!plan.has(ScanType::Lint));
+        assert!(plan.has(ScanType::CodeReview));
+        assert!(plan.has(ScanType::Sast));
+    }
+
+    #[test]
+    fn no_code_artifact_yields_empty_plan_for_web() {
+        let t = target(TargetType::WebApp, vec![]);
+        let plan = build_scan_plan(&t);
+        assert!(plan.is_empty());
+    }
+}

compliance-agent/src/pipeline/plc/ast.rs

@@ -0,0 +1,226 @@
+//! Abstract syntax tree for IEC 61131-3 Structured Text (ST).
+//!
+//! This is the security-relevant subset: POUs with their variable declarations
+//! and statement bodies, enough to run semantic control-logic rules over. It is
+//! deliberately not a full language model — declarations we don't reason about
+//! (e.g. exotic type definitions) are parsed loosely and kept as raw text.
+
+/// A Program Organization Unit: a PROGRAM, FUNCTION, or FUNCTION_BLOCK.
+#[derive(Debug, Clone)]
+pub struct Pou {
+    pub name: String,
+    pub kind: PouKind,
+    /// The declared variables, across all VAR_* sections.
+    pub vars: Vec<VarDecl>,
+    /// The statement body.
+    pub body: Vec<Stmt>,
+    /// 1-based line where the POU header appears (in the source that was parsed).
+    pub line: u32,
+}
+
+#[derive(Debug, Clone, Copy, PartialEq, Eq)]
+pub enum PouKind {
+    Program,
+    Function,
+    FunctionBlock,
+}
+
+impl PouKind {
+    pub fn label(self) -> &'static str {
+        match self {
+            PouKind::Program => "PROGRAM",
+            PouKind::Function => "FUNCTION",
+            PouKind::FunctionBlock => "FUNCTION_BLOCK",
+        }
+    }
+}
+
+/// A single declared variable.
+#[derive(Debug, Clone)]
+pub struct VarDecl {
+    pub name: String,
+    pub section: VarSection,
+    /// The declared type as written (e.g. `BOOL`, `INT`, `ARRAY[0..9] OF INT`).
+    pub type_name: String,
+    /// Whether the type is an ARRAY, and its declared bounds `(lo, hi)` when
+    /// they are literal integers — used by the array-bounds rule.
+    pub array_bounds: Option<(i64, i64)>,
+    /// The initializer expression, if any (`:= <expr>`).
+    pub init: Option<Expr>,
+    pub line: u32,
+}
+
+#[derive(Debug, Clone, Copy, PartialEq, Eq)]
+pub enum VarSection {
+    Var,
+    Input,
+    Output,
+    InOut,
+    Global,
+    Temp,
+    External,
+}
+
+/// A statement.
+#[derive(Debug, Clone)]
+pub enum Stmt {
+    Assign {
+        target: Expr,
+        value: Expr,
+        line: u32,
+    },
+    If {
+        /// (condition, body) for IF and each ELSIF, in order.
+        branches: Vec<(Expr, Vec<Stmt>)>,
+        else_body: Option<Vec<Stmt>>,
+        line: u32,
+    },
+    Case {
+        selector: Expr,
+        /// (label expressions, body) per CASE arm.
+        arms: Vec<(Vec<Expr>, Vec<Stmt>)>,
+        else_body: Option<Vec<Stmt>>,
+        line: u32,
+    },
+    For {
+        var: String,
+        from: Expr,
+        to: Expr,
+        by: Option<Expr>,
+        body: Vec<Stmt>,
+        line: u32,
+    },
+    While {
+        cond: Expr,
+        body: Vec<Stmt>,
+        line: u32,
+    },
+    Repeat {
+        body: Vec<Stmt>,
+        until: Expr,
+        line: u32,
+    },
+    /// A bare call statement, e.g. `TON1(IN := x, PT := T#5s);`.
+    Call {
+        callee: String,
+        args: Vec<CallArg>,
+        line: u32,
+    },
+    Return {
+        line: u32,
+    },
+    Exit {
+        line: u32,
+    },
+    /// `JMP label;` — an unstructured jump.
+    Jump {
+        label: String,
+        line: u32,
+    },
+    /// `label:` — a jump target.
+    Label {
+        name: String,
+        line: u32,
+    },
+}
+
+/// One argument in a call: positional (`name: None`) or named (`X := expr`).
+#[derive(Debug, Clone)]
+pub struct CallArg {
+    pub name: Option<String>,
+    pub value: Expr,
+}
+
+/// An expression.
+#[derive(Debug, Clone)]
+pub enum Expr {
+    Int(i64, u32),
+    Real(f64, u32),
+    Bool(bool, u32),
+    /// A string literal, with the unquoted contents.
+    Str(String, u32),
+    /// A duration / date / time literal, kept as raw text (`T#5s`, `DT#...`).
+    Time(String, u32),
+    Ident(String, u32),
+    /// `base[index]`.
+    Index {
+        base: Box<Expr>,
+        index: Box<Expr>,
+        line: u32,
+    },
+    /// `base.field`.
+    Member {
+        base: Box<Expr>,
+        field: String,
+        line: u32,
+    },
+    Unary {
+        op: UnOp,
+        expr: Box<Expr>,
+        line: u32,
+    },
+    Binary {
+        op: BinOp,
+        lhs: Box<Expr>,
+        rhs: Box<Expr>,
+        line: u32,
+    },
+    /// A function call used as an expression, e.g. `LIMIT(a, b, c)`.
+    Call {
+        callee: String,
+        args: Vec<CallArg>,
+        line: u32,
+    },
+}
+
+impl Expr {
+    /// The 1-based source line this expression starts on.
+    pub fn line(&self) -> u32 {
+        match self {
+            Expr::Int(_, l)
+            | Expr::Real(_, l)
+            | Expr::Bool(_, l)
+            | Expr::Str(_, l)
+            | Expr::Time(_, l)
+            | Expr::Ident(_, l)
+            | Expr::Index { line: l, .. }
+            | Expr::Member { line: l, .. }
+            | Expr::Unary { line: l, .. }
+            | Expr::Binary { line: l, .. }
+            | Expr::Call { line: l, .. } => *l,
+        }
+    }
+
+    /// If this expression is a plain identifier, its name.
+    pub fn as_ident(&self) -> Option<&str> {
+        match self {
+            Expr::Ident(name, _) => Some(name.as_str()),
+            _ => None,
+        }
+    }
+}
+
+#[derive(Debug, Clone, Copy, PartialEq, Eq)]
+pub enum UnOp {
+    Not,
+    Neg,
+}
+
+#[derive(Debug, Clone, Copy, PartialEq, Eq)]
+pub enum BinOp {
+    Add,
+    Sub,
+    Mul,
+    Div,
+    Mod,
+    Pow,
+    Eq,
+    Ne,
+    Lt,
+    Le,
+    Gt,
+    Ge,
+    And,
+    Or,
+    Xor,
+}

compliance-agent/src/pipeline/plc/lexer.rs

@@ -0,0 +1,372 @@
+//! Lexer for IEC 61131-3 Structured Text.
+//!
+//! Tokenizes ST source into a flat token stream with 1-based line numbers.
+//! Keywords are case-insensitive. Handles `(* *)` and `//` comments, `'..'` and
+//! `".."` strings (with `''`/`""` escapes), based integers (`16#FF`, `2#1010`),
+//! and duration/date literals (`T#5s`, `DT#...`) kept as raw text.
+
+/// A lexed token with its source line.
+#[derive(Debug, Clone)]
+pub struct Token {
+    pub kind: Tok,
+    pub line: u32,
+}
+
+#[derive(Debug, Clone, PartialEq)]
+pub enum Tok {
+    Int(i64),
+    Real(f64),
+    Str(String),
+    Time(String),
+    Bool(bool),
+    Ident(String),
+    Kw(Keyword),
+    Assign, // :=
+    Plus,   // +
+    Minus,  // -
+    Star,   // *
+    Slash,  // /
+    Power,  // **
+    LParen, // (
+    RParen, // )
+    LBrack, // [
+    RBrack, // ]
+    Dot,    // .
+    DotDot, // ..
+    Comma,  // ,
+    Semi,   // ;
+    Colon,  // :
+    Lt,     // <
+    Le,     // <=
+    Gt,     // >
+    Ge,     // >=
+    Eq,     // =
+    Ne,     // <>
+    Amp,    // &
+    Eof,
+}
+
+#[derive(Debug, Clone, Copy, PartialEq, Eq)]
+pub enum Keyword {
+    Program,
+    EndProgram,
+    Function,
+    EndFunction,
+    FunctionBlock,
+    EndFunctionBlock,
+    Var,
+    VarInput,
+    VarOutput,
+    VarInOut,
+    VarGlobal,
+    VarTemp,
+    VarExternal,
+    Constant,
+    EndVar,
+    Array,
+    Of,
+    If,
+    Then,
+    Elsif,
+    Else,
+    EndIf,
+    Case,
+    EndCase,
+    For,
+    To,
+    By,
+    Do,
+    EndFor,
+    While,
+    EndWhile,
+    Repeat,
+    Until,
+    EndRepeat,
+    Return,
+    Exit,
+    Jmp,
+    Not,
+    And,
+    Or,
+    Xor,
+    Mod,
+    Type,
+    EndType,
+    Struct,
+    EndStruct,
+}
+
+fn keyword_from(word: &str) -> Option<Keyword> {
+    use Keyword::*;
+    Some(match word.to_ascii_uppercase().as_str() {
+        "PROGRAM" => Program,
+        "END_PROGRAM" => EndProgram,
+        "FUNCTION" => Function,
+        "END_FUNCTION" => EndFunction,
+        "FUNCTION_BLOCK" => FunctionBlock,
+        "END_FUNCTION_BLOCK" => EndFunctionBlock,
+        "VAR" => Var,
+        "VAR_INPUT" => VarInput,
+        "VAR_OUTPUT" => VarOutput,
+        "VAR_IN_OUT" => VarInOut,
+        "VAR_GLOBAL" => VarGlobal,
+        "VAR_TEMP" => VarTemp,
+        "VAR_EXTERNAL" => VarExternal,
+        "CONSTANT" => Constant,
+        "END_VAR" => EndVar,
+        "ARRAY" => Array,
+        "OF" => Of,
+        "IF" => If,
+        "THEN" => Then,
+        "ELSIF" => Elsif,
+        "ELSE" => Else,
+        "END_IF" => EndIf,
+        "CASE" => Case,
+        "END_CASE" => EndCase,
+        "FOR" => For,
+        "TO" => To,
+        "BY" => By,
+        "DO" => Do,
+        "END_FOR" => EndFor,
+        "WHILE" => While,
+        "END_WHILE" => EndWhile,
+        "REPEAT" => Repeat,
+        "UNTIL" => Until,
+        "END_REPEAT" => EndRepeat,
+        "RETURN" => Return,
+        "EXIT" => Exit,
+        "JMP" => Jmp,
+        "NOT" => Not,
+        "AND" => And,
+        "OR" => Or,
+        "XOR" => Xor,
+        "MOD" => Mod,
+        "TYPE" => Type,
+        "END_TYPE" => EndType,
+        "STRUCT" => Struct,
+        "END_STRUCT" => EndStruct,
+        _ => return None,
+    })
+}
+
+/// Tokenize `src`. Unknown characters are skipped (best-effort — a scanner must
+/// not die on odd input).
+pub fn lex(src: &str) -> Vec<Token> {
+    let chars: Vec<char> = src.chars().collect();
+    let mut i = 0usize;
+    let mut line = 1u32;
+    let mut out = Vec::new();
+
+    let bump_line = |c: char, line: &mut u32| {
+        if c == '\n' {
+            *line += 1;
+        }
+    };
+
+    while i < chars.len() {
+        let c = chars[i];
+
+        // Whitespace.
+        if c.is_whitespace() {
+            bump_line(c, &mut line);
+            i += 1;
+            continue;
+        }
+
+        // Line comment: //
+        if c == '/' && i + 1 < chars.len() && chars[i + 1] == '/' {
+            while i < chars.len() && chars[i] != '\n' {
+                i += 1;
+            }
+            continue;
+        }
+
+        // Block comment: (* ... *)
+        if c == '(' && i + 1 < chars.len() && chars[i + 1] == '*' {
+            i += 2;
+            while i + 1 < chars.len() && !(chars[i] == '*' && chars[i + 1] == ')') {
+                bump_line(chars[i], &mut line);
+                i += 1;
+            }
+            i = (i + 2).min(chars.len());
+            continue;
+        }
+
+        let tok_line = line;
+
+        // String literal: '...' or "..."
+        if c == '\'' || c == '"' {
+            let quote = c;
+            i += 1;
+            let mut s = String::new();
+            while i < chars.len() {
+                let ch = chars[i];
+                if ch == quote {
+                    // Doubled quote is an escaped quote.
+                    if i + 1 < chars.len() && chars[i + 1] == quote {
+                        s.push(quote);
+                        i += 2;
+                        continue;
+                    }
+                    i += 1;
+                    break;
+                }
+                bump_line(ch, &mut line);
+                s.push(ch);
+                i += 1;
+            }
+            out.push(Token {
+                kind: Tok::Str(s),
+                line: tok_line,
+            });
+            continue;
+        }
+
+        // Identifier / keyword / time literal / boolean.
+        if c.is_ascii_alphabetic() || c == '_' {
+            let start = i;
+            while i < chars.len() && (chars[i].is_ascii_alphanumeric() || chars[i] == '_') {
+                i += 1;
+            }
+            let word: String = chars[start..i].iter().collect();
+
+            // Duration/date/time literal prefix: T#, TIME#, DT#, D#, TOD#, LT# ...
+            if i < chars.len() && chars[i] == '#' {
+                let up = word.to_ascii_uppercase();
+                if matches!(
+                    up.as_str(),
+                    "T" | "TIME" | "DT" | "D" | "TOD" | "LT" | "DATE"
+                ) {
+                    let lit_start = start;
+                    i += 1; // consume '#'
+                    while i < chars.len()
+                        && (chars[i].is_ascii_alphanumeric()
+                            || chars[i] == '.'
+                            || chars[i] == '_'
+                            || chars[i] == ':')
+                    {
+                        i += 1;
+                    }
+                    let lit: String = chars[lit_start..i].iter().collect();
+                    out.push(Token {
+                        kind: Tok::Time(lit),
+                        line: tok_line,
+                    });
+                    continue;
+                }
+            }
+
+            let kind = match word.to_ascii_uppercase().as_str() {
+                "TRUE" => Tok::Bool(true),
+                "FALSE" => Tok::Bool(false),
+                _ => match keyword_from(&word) {
+                    Some(kw) => Tok::Kw(kw),
+                    None => Tok::Ident(word),
+                },
+            };
+            out.push(Token {
+                kind,
+                line: tok_line,
+            });
+            continue;
+        }
+
+        // Number: decimal, real, or based (16#..., 2#...).
+        if c.is_ascii_digit() {
+            let start = i;
+            while i < chars.len() && (chars[i].is_ascii_digit() || chars[i] == '_') {
+                i += 1;
+            }
+            // Based literal: <base>#<digits>
+            if i < chars.len() && chars[i] == '#' {
+                let base_str: String = chars[start..i].iter().filter(|c| **c != '_').collect();
+                i += 1;
+                let dstart = i;
+                while i < chars.len() && (chars[i].is_ascii_alphanumeric() || chars[i] == '_') {
+                    i += 1;
+                }
+                let digits: String = chars[dstart..i].iter().filter(|c| **c != '_').collect();
+                let radix = base_str.parse::<u32>().unwrap_or(10);
+                let val = i64::from_str_radix(&digits, radix.clamp(2, 36)).unwrap_or(0);
+                out.push(Token {
+                    kind: Tok::Int(val),
+                    line: tok_line,
+                });
+                continue;
+            }
+            // Real: has a '.' (not '..') or exponent.
+            let is_real =
+                i < chars.len() && chars[i] == '.' && !(i + 1 < chars.len() && chars[i + 1] == '.');
+            if is_real {
+                i += 1;
+                while i < chars.len() && (chars[i].is_ascii_digit() || chars[i] == '_') {
+                    i += 1;
+                }
+                let raw: String = chars[start..i].iter().filter(|c| **c != '_').collect();
+                out.push(Token {
+                    kind: Tok::Real(raw.parse().unwrap_or(0.0)),
+                    line: tok_line,
+                });
+                continue;
+            }
+            let raw: String = chars[start..i].iter().filter(|c| **c != '_').collect();
+            out.push(Token {
+                kind: Tok::Int(raw.parse().unwrap_or(0)),
+                line: tok_line,
+            });
+            continue;
+        }
+
+        // Operators / punctuation (longest match first).
+        let two: String = chars[i..(i + 2).min(chars.len())].iter().collect();
+        let kind = match two.as_str() {
+            ":=" => Some(Tok::Assign),
+            "<=" => Some(Tok::Le),
+            ">=" => Some(Tok::Ge),
+            "<>" => Some(Tok::Ne),
+            ".." => Some(Tok::DotDot),
+            "**" => Some(Tok::Power),
+            _ => None,
+        };
+        if let Some(k) = kind {
+            out.push(Token {
+                kind: k,
+                line: tok_line,
+            });
+            i += 2;
+            continue;
+        }
+        let one = match c {
+            '+' => Some(Tok::Plus),
+            '-' => Some(Tok::Minus),
+            '*' => Some(Tok::Star),
+            '/' => Some(Tok::Slash),
+            '(' => Some(Tok::LParen),
+            ')' => Some(Tok::RParen),
+            '[' => Some(Tok::LBrack),
+            ']' => Some(Tok::RBrack),
+            '.' => Some(Tok::Dot),
+            ',' => Some(Tok::Comma),
+            ';' => Some(Tok::Semi),
+            ':' => Some(Tok::Colon),
+            '<' => Some(Tok::Lt),
+            '>' => Some(Tok::Gt),
+            '=' => Some(Tok::Eq),
+            '&' => Some(Tok::Amp),
+            _ => None,
+        };
+        if let Some(k) = one {
+            out.push(Token {
+                kind: k,
+                line: tok_line,
+            });
+        }
+        i += 1;
+    }
+
+    out.push(Token {
+        kind: Tok::Eof,
+        line,
+    });
+    out
+}

compliance-agent/src/pipeline/plc/mod.rs

@@ -0,0 +1,200 @@
+//! PLC control-logic security scanner for IEC 61131-3 targets.
+//!
+//! Parses Structured Text (raw `.st`/`.scl`/`.exp` files and PLCopen-XML
+//! projects) into an AST and runs semantic control-logic security rules over it.
+//! Implements [`ScanType::PlcControlLogic`].
+
+pub mod ast;
+pub mod lexer;
+pub mod parser;
+pub mod plcopen;
+pub mod rules;
+
+use std::path::Path;
+
+use compliance_core::error::CoreError;
+use compliance_core::models::{Finding, ScanType};
+use compliance_core::traits::{ScanOutput, Scanner};
+
+use crate::pipeline::dedup;
+
+/// Scanner for `ScanType::PlcControlLogic`.
+pub struct PlcControlLogicScanner;
+
+impl Scanner for PlcControlLogicScanner {
+    fn name(&self) -> &str {
+        "plc-control-logic"
+    }
+
+    fn scan_type(&self) -> ScanType {
+        ScanType::PlcControlLogic
+    }
+
+    #[tracing::instrument(skip_all)]
+    async fn scan(&self, repo_path: &Path, repo_id: &str) -> Result<ScanOutput, CoreError> {
+        let findings = analyze_tree(repo_path, repo_id);
+        Ok(ScanOutput {
+            findings,
+            sbom_entries: Vec::new(),
+        })
+    }
+}
+
+/// Walk a PLC project tree and produce findings.
+pub(crate) fn analyze_tree(root: &Path, repo_id: &str) -> Vec<Finding> {
+    let mut findings = Vec::new();
+    for entry in walkdir::WalkDir::new(root)
+        .into_iter()
+        .filter_map(|e| e.ok())
+    {
+        if !entry.file_type().is_file() {
+            continue;
+        }
+        let path = entry.path();
+        let ext = path
+            .extension()
+            .and_then(|e| e.to_str())
+            .unwrap_or("")
+            .to_ascii_lowercase();
+        let is_st = matches!(ext.as_str(), "st" | "iecst" | "scl" | "exp" | "il");
+        let is_xml = matches!(ext.as_str(), "xml" | "plcopen" | "project");
+        if !is_st && !is_xml {
+            continue;
+        }
+        let Ok(content) = std::fs::read_to_string(path) else {
+            continue;
+        };
+        let pous = if is_xml {
+            plcopen::parse_plcopen(&content)
+        } else {
+            parser::parse(&content)
+        };
+        if pous.is_empty() {
+            continue;
+        }
+        let rel = path
+            .strip_prefix(root)
+            .unwrap_or(path)
+            .to_string_lossy()
+            .to_string();
+        for pou in &pous {
+            for hit in rules::analyze(pou) {
+                let line_s = hit.line.to_string();
+                let fingerprint =
+                    dedup::compute_fingerprint(&[repo_id, &rel, hit.rule_id, &pou.name, &line_s]);
+                let mut f = Finding::new(
+                    repo_id.to_string(),
+                    fingerprint,
+                    "plc-control-logic".to_string(),
+                    ScanType::PlcControlLogic,
+                    hit.title,
+                    hit.description,
+                    hit.severity,
+                );
+                f.file_path = Some(rel.clone());
+                f.line_number = Some(hit.line);
+                f.rule_id = Some(hit.rule_id.to_string());
+                f.cwe = hit.cwe.map(String::from);
+                f.remediation = Some(hit.remediation.to_string());
+                findings.push(f);
+            }
+        }
+    }
+    findings
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use std::collections::HashSet;
+    use std::path::PathBuf;
+
+    fn demo_dir() -> PathBuf {
+        PathBuf::from(env!("CARGO_MANIFEST_DIR"))
+            .parent()
+            .expect("workspace root")
+            .join("examples/plc-demo")
+    }
+
+    #[test]
+    fn scans_demo_project_end_to_end() {
+        let findings = analyze_tree(&demo_dir(), "demo-target");
+        assert!(!findings.is_empty(), "demo project should produce findings");
+
+        let rules: HashSet<&str> = findings
+            .iter()
+            .filter_map(|f| f.rule_id.as_deref())
+            .collect();
+        for r in [
+            "plc-hardcoded-credential",
+            "plc-default-password",
+            "plc-safety-bypass",
+            "plc-array-unchecked-index",
+            "plc-insecure-comm",
+            "plc-insecure-protocol-port",
+            "plc-unstructured-jump",
+            "plc-division-by-zero",
+        ] {
+            assert!(rules.contains(r), "expected rule {r}; got {rules:?}");
+        }
+
+        // Every finding is well-formed for storage.
+        for f in &findings {
+            assert_eq!(f.repo_id, "demo-target");
+            assert!(f.file_path.is_some(), "finding needs a file");
+            assert!(f.line_number.is_some(), "finding needs a line");
+        }
+
+        // The guarded division (IF ScaleFactor <> 0.0) must not be double-counted:
+        // exactly one division-by-zero (the unguarded MeasuredFlow divide).
+        let div0 = findings
+            .iter()
+            .filter(|f| f.rule_id.as_deref() == Some("plc-division-by-zero"))
+            .count();
+        assert_eq!(div0, 1, "only the unguarded division should be flagged");
+    }
+
+    /// The realistic OpenPLC-style traffic-light sample is mostly sound control
+    /// logic: the scanner must surface its few genuine defects and stay quiet on
+    /// the timed state machine and the guarded duty-cycle division.
+    #[test]
+    fn realistic_sample_flags_only_real_issues() {
+        let all = analyze_tree(&demo_dir(), "demo-target");
+        let tl: Vec<_> = all
+            .iter()
+            .filter(|f| {
+                f.file_path
+                    .as_deref()
+                    .is_some_and(|p| p.ends_with("traffic_light.st"))
+            })
+            .collect();
+        assert!(!tl.is_empty(), "traffic_light.st should produce findings");
+
+        let rules: HashSet<&str> = tl.iter().filter_map(|f| f.rule_id.as_deref()).collect();
+        // The three planted defects: hardcoded SCADA password, cleartext Modbus
+        // master (no auth), and a maintenance mode that drops the PedPermit.
+        for r in [
+            "plc-hardcoded-credential",
+            "plc-insecure-comm",
+            "plc-safety-bypass",
+        ] {
+            assert!(rules.contains(r), "expected rule {r}; got {rules:?}");
+        }
+        // Modbus/TCP on 502 is also an insecure-protocol port.
+        assert!(rules.contains("plc-insecure-protocol-port"));
+
+        // Low false positives: the guarded `IF LampCount <> 0` division and the
+        // JMP-free state machine must not trip anything.
+        assert_eq!(
+            tl.iter()
+                .filter(|f| f.rule_id.as_deref() == Some("plc-division-by-zero"))
+                .count(),
+            0,
+            "the guarded duty-cycle division must not be flagged"
+        );
+        assert!(
+            !rules.contains("plc-unstructured-jump"),
+            "the CASE state machine uses no JMP"
+        );
+    }
+}

compliance-agent/src/pipeline/plc/parser.rs

@@ -0,0 +1,766 @@
+//! Recursive-descent parser for the security-relevant subset of Structured Text.
+//!
+//! Tolerant by design: it parses the POUs, variable sections, and statement
+//! bodies it understands, and skips (with statement/POU-level recovery) anything
+//! it does not, so a single odd construct never sinks the whole file.
+
+use super::ast::*;
+use super::lexer::{Keyword as K, Tok, Token};
+
+pub struct Parser {
+    toks: Vec<Token>,
+    pos: usize,
+}
+
+impl Parser {
+    pub fn new(toks: Vec<Token>) -> Self {
+        Self { toks, pos: 0 }
+    }
+
+    // ── token helpers ──────────────────────────────────────────────
+    fn peek(&self) -> &Tok {
+        &self.toks[self.pos.min(self.toks.len() - 1)].kind
+    }
+    fn line(&self) -> u32 {
+        self.toks[self.pos.min(self.toks.len() - 1)].line
+    }
+    fn at_end(&self) -> bool {
+        matches!(self.peek(), Tok::Eof)
+    }
+    fn advance(&mut self) -> Tok {
+        let t = self.toks[self.pos.min(self.toks.len() - 1)].kind.clone();
+        if self.pos < self.toks.len() - 1 {
+            self.pos += 1;
+        }
+        t
+    }
+    fn eat(&mut self, t: &Tok) -> bool {
+        if self.peek() == t {
+            self.advance();
+            true
+        } else {
+            false
+        }
+    }
+    fn eat_kw(&mut self, k: K) -> bool {
+        if matches!(self.peek(), Tok::Kw(x) if *x == k) {
+            self.advance();
+            true
+        } else {
+            false
+        }
+    }
+    fn at_kw(&self, k: K) -> bool {
+        matches!(self.peek(), Tok::Kw(x) if *x == k)
+    }
+    fn ident(&mut self) -> Option<String> {
+        if let Tok::Ident(s) = self.peek() {
+            let s = s.clone();
+            self.advance();
+            Some(s)
+        } else {
+            None
+        }
+    }
+
+    // ── top level ──────────────────────────────────────────────────
+    /// Parse every POU in the token stream.
+    pub fn parse_units(&mut self) -> Vec<Pou> {
+        let mut pous = Vec::new();
+        while !self.at_end() {
+            match self.peek() {
+                Tok::Kw(K::Program) => {
+                    self.advance();
+                    if let Some(p) = self.parse_pou(PouKind::Program, K::EndProgram) {
+                        pous.push(p);
+                    }
+                }
+                Tok::Kw(K::Function) => {
+                    self.advance();
+                    if let Some(p) = self.parse_pou(PouKind::Function, K::EndFunction) {
+                        pous.push(p);
+                    }
+                }
+                Tok::Kw(K::FunctionBlock) => {
+                    self.advance();
+                    if let Some(p) = self.parse_pou(PouKind::FunctionBlock, K::EndFunctionBlock) {
+                        pous.push(p);
+                    }
+                }
+                // Skip TYPE...END_TYPE and anything else at top level.
+                _ => {
+                    self.advance();
+                }
+            }
+        }
+        pous
+    }
+
+    fn parse_pou(&mut self, kind: PouKind, end: K) -> Option<Pou> {
+        let line = self.line();
+        let name = self.ident().unwrap_or_else(|| "<anonymous>".to_string());
+        // Optional `: return_type` for functions.
+        if self.eat(&Tok::Colon) {
+            let _ = self.advance(); // return type token
+        }
+
+        let mut vars = Vec::new();
+        // Variable sections precede the body.
+        while let Some(section) = self.var_section_kw() {
+            self.advance();
+            let _ = self.eat_kw(K::Constant); // CONSTANT is informational for our rules
+            self.parse_var_decls(section, &mut vars);
+        }
+
+        // Body statements until END_<kind>.
+        let mut body = Vec::new();
+        while !self.at_end() && !self.at_kw(end) {
+            if let Some(s) = self.parse_stmt() {
+                body.push(s);
+            }
+        }
+        self.eat_kw(end);
+
+        Some(Pou {
+            name,
+            kind,
+            vars,
+            body,
+            line,
+        })
+    }
+
+    fn var_section_kw(&self) -> Option<VarSection> {
+        match self.peek() {
+            Tok::Kw(K::Var) => Some(VarSection::Var),
+            Tok::Kw(K::VarInput) => Some(VarSection::Input),
+            Tok::Kw(K::VarOutput) => Some(VarSection::Output),
+            Tok::Kw(K::VarInOut) => Some(VarSection::InOut),
+            Tok::Kw(K::VarGlobal) => Some(VarSection::Global),
+            Tok::Kw(K::VarTemp) => Some(VarSection::Temp),
+            Tok::Kw(K::VarExternal) => Some(VarSection::External),
+            _ => None,
+        }
+    }
+
+    fn parse_var_decls(&mut self, section: VarSection, out: &mut Vec<VarDecl>) {
+        while !self.at_end() && !self.at_kw(K::EndVar) {
+            let line = self.line();
+            // names: a, b, c
+            let mut names = Vec::new();
+            match self.ident() {
+                Some(n) => names.push(n),
+                None => {
+                    // Not a declaration we understand — skip to next ; or END_VAR.
+                    self.sync_decl();
+                    continue;
+                }
+            }
+            while self.eat(&Tok::Comma) {
+                if let Some(n) = self.ident() {
+                    names.push(n);
+                }
+            }
+            if !self.eat(&Tok::Colon) {
+                self.sync_decl();
+                continue;
+            }
+            let (type_name, array_bounds) = self.parse_type();
+            let init = if self.eat(&Tok::Assign) {
+                Some(self.parse_expr())
+            } else {
+                None
+            };
+            self.eat(&Tok::Semi);
+            for n in names {
+                out.push(VarDecl {
+                    name: n,
+                    section,
+                    type_name: type_name.clone(),
+                    array_bounds,
+                    init: init.clone(),
+                    line,
+                });
+            }
+        }
+        self.eat_kw(K::EndVar);
+    }
+
+    /// Parse a (possibly ARRAY) type, returning its rendered name and literal
+    /// bounds when present.
+    fn parse_type(&mut self) -> (String, Option<(i64, i64)>) {
+        if self.eat_kw(K::Array) {
+            let mut bounds = None;
+            if self.eat(&Tok::LBrack) {
+                let lo = self.int_lit();
+                self.eat(&Tok::DotDot);
+                let hi = self.int_lit();
+                if let (Some(lo), Some(hi)) = (lo, hi) {
+                    bounds = Some((lo, hi));
+                }
+                // Skip any further dimensions / tokens to the closing bracket.
+                while !self.at_end() && !self.eat(&Tok::RBrack) {
+                    self.advance();
+                }
+            }
+            self.eat_kw(K::Of);
+            let elem = self.type_ident();
+            (format!("ARRAY OF {elem}"), bounds)
+        } else {
+            (self.type_ident(), None)
+        }
+    }
+
+    fn type_ident(&mut self) -> String {
+        // Types can be qualified idents; keep it simple: one token, plus any
+        // string-length suffix like STRING[80].
+        let base = match self.advance() {
+            Tok::Ident(s) => s,
+            Tok::Kw(_) => "TYPE".to_string(),
+            other => format!("{other:?}"),
+        };
+        if self.eat(&Tok::LBrack) {
+            while !self.at_end() && !self.eat(&Tok::RBrack) {
+                self.advance();
+            }
+        }
+        base
+    }
+
+    fn int_lit(&mut self) -> Option<i64> {
+        match self.peek() {
+            Tok::Int(n) => {
+                let n = *n;
+                self.advance();
+                Some(n)
+            }
+            Tok::Minus => {
+                self.advance();
+                if let Tok::Int(n) = self.peek() {
+                    let n = -*n;
+                    self.advance();
+                    Some(n)
+                } else {
+                    None
+                }
+            }
+            _ => None,
+        }
+    }
+
+    fn sync_decl(&mut self) {
+        while !self.at_end() && !self.eat(&Tok::Semi) && !self.at_kw(K::EndVar) {
+            self.advance();
+        }
+    }
+    fn sync_stmt(&mut self) {
+        while !self.at_end() && !self.eat(&Tok::Semi) {
+            // Stop at block terminators so recovery doesn't swallow structure.
+            if matches!(
+                self.peek(),
+                Tok::Kw(
+                    K::EndIf
+                        | K::EndFor
+                        | K::EndWhile
+                        | K::EndCase
+                        | K::EndRepeat
+                        | K::EndProgram
+                        | K::EndFunction
+                        | K::EndFunctionBlock
+                        | K::Else
+                        | K::Elsif
+                )
+            ) {
+                return;
+            }
+            self.advance();
+        }
+    }
+
+    // ── statements ─────────────────────────────────────────────────
+    fn parse_stmt(&mut self) -> Option<Stmt> {
+        let line = self.line();
+        match self.peek().clone() {
+            Tok::Semi => {
+                self.advance();
+                None
+            }
+            Tok::Kw(K::If) => self.parse_if(),
+            Tok::Kw(K::Case) => self.parse_case(),
+            Tok::Kw(K::For) => self.parse_for(),
+            Tok::Kw(K::While) => self.parse_while(),
+            Tok::Kw(K::Repeat) => self.parse_repeat(),
+            Tok::Kw(K::Return) => {
+                self.advance();
+                self.eat(&Tok::Semi);
+                Some(Stmt::Return { line })
+            }
+            Tok::Kw(K::Exit) => {
+                self.advance();
+                self.eat(&Tok::Semi);
+                Some(Stmt::Exit { line })
+            }
+            Tok::Kw(K::Jmp) => {
+                self.advance();
+                let label = self.ident().unwrap_or_default();
+                self.eat(&Tok::Semi);
+                Some(Stmt::Jump { label, line })
+            }
+            Tok::Ident(name) => {
+                // Could be `label:`, `call(...)`, or an assignment.
+                // Lookahead: ident ':' (not ':=') → label.
+                if matches!(
+                    self.toks.get(self.pos + 1).map(|t| &t.kind),
+                    Some(Tok::Colon)
+                ) && !matches!(self.toks.get(self.pos + 2).map(|t| &t.kind), Some(Tok::Eq))
+                {
+                    self.advance(); // ident
+                    self.advance(); // ':'
+                    return Some(Stmt::Label { name, line });
+                }
+                let lhs = self.parse_expr();
+                if self.eat(&Tok::Assign) {
+                    let value = self.parse_expr();
+                    self.eat(&Tok::Semi);
+                    Some(Stmt::Assign {
+                        target: lhs,
+                        value,
+                        line,
+                    })
+                } else if let Expr::Call { callee, args, .. } = lhs {
+                    self.eat(&Tok::Semi);
+                    Some(Stmt::Call { callee, args, line })
+                } else {
+                    // Bare expression / FB invocation without args recognized —
+                    // skip to the terminator.
+                    self.sync_stmt();
+                    None
+                }
+            }
+            _ => {
+                self.sync_stmt();
+                None
+            }
+        }
+    }
+
+    fn parse_block_until(&mut self, terms: &[K]) -> Vec<Stmt> {
+        let mut body = Vec::new();
+        while !self.at_end() && !terms.iter().any(|k| self.at_kw(*k)) {
+            if let Some(s) = self.parse_stmt() {
+                body.push(s);
+            }
+        }
+        body
+    }
+
+    fn parse_if(&mut self) -> Option<Stmt> {
+        let line = self.line();
+        self.eat_kw(K::If);
+        let mut branches = Vec::new();
+        let cond = self.parse_expr();
+        self.eat_kw(K::Then);
+        let body = self.parse_block_until(&[K::Elsif, K::Else, K::EndIf]);
+        branches.push((cond, body));
+        while self.eat_kw(K::Elsif) {
+            let c = self.parse_expr();
+            self.eat_kw(K::Then);
+            let b = self.parse_block_until(&[K::Elsif, K::Else, K::EndIf]);
+            branches.push((c, b));
+        }
+        let else_body = if self.eat_kw(K::Else) {
+            Some(self.parse_block_until(&[K::EndIf]))
+        } else {
+            None
+        };
+        self.eat_kw(K::EndIf);
+        self.eat(&Tok::Semi);
+        Some(Stmt::If {
+            branches,
+            else_body,
+            line,
+        })
+    }
+
+    fn parse_case(&mut self) -> Option<Stmt> {
+        let line = self.line();
+        self.eat_kw(K::Case);
+        let selector = self.parse_expr();
+        self.eat_kw(K::Of);
+        let mut arms = Vec::new();
+        let mut else_body = None;
+        while !self.at_end() && !self.at_kw(K::EndCase) {
+            if self.eat_kw(K::Else) {
+                else_body = Some(self.parse_block_until(&[K::EndCase]));
+                break;
+            }
+            // labels: expr {, expr} :
+            let mut labels = vec![self.parse_expr()];
+            while self.eat(&Tok::Comma) {
+                labels.push(self.parse_expr());
+            }
+            self.eat(&Tok::Colon);
+            let body = self.parse_block_until(&[K::EndCase, K::Else]);
+            arms.push((labels, body));
+        }
+        self.eat_kw(K::EndCase);
+        self.eat(&Tok::Semi);
+        Some(Stmt::Case {
+            selector,
+            arms,
+            else_body,
+            line,
+        })
+    }
+
+    fn parse_for(&mut self) -> Option<Stmt> {
+        let line = self.line();
+        self.eat_kw(K::For);
+        let var = self.ident().unwrap_or_default();
+        self.eat(&Tok::Assign);
+        let from = self.parse_expr();
+        self.eat_kw(K::To);
+        let to = self.parse_expr();
+        let by = if self.eat_kw(K::By) {
+            Some(self.parse_expr())
+        } else {
+            None
+        };
+        self.eat_kw(K::Do);
+        let body = self.parse_block_until(&[K::EndFor]);
+        self.eat_kw(K::EndFor);
+        self.eat(&Tok::Semi);
+        Some(Stmt::For {
+            var,
+            from,
+            to,
+            by,
+            body,
+            line,
+        })
+    }
+
+    fn parse_while(&mut self) -> Option<Stmt> {
+        let line = self.line();
+        self.eat_kw(K::While);
+        let cond = self.parse_expr();
+        self.eat_kw(K::Do);
+        let body = self.parse_block_until(&[K::EndWhile]);
+        self.eat_kw(K::EndWhile);
+        self.eat(&Tok::Semi);
+        Some(Stmt::While { cond, body, line })
+    }
+
+    fn parse_repeat(&mut self) -> Option<Stmt> {
+        let line = self.line();
+        self.eat_kw(K::Repeat);
+        let body = self.parse_block_until(&[K::Until, K::EndRepeat]);
+        self.eat_kw(K::Until);
+        let until = self.parse_expr();
+        self.eat_kw(K::EndRepeat);
+        self.eat(&Tok::Semi);
+        Some(Stmt::Repeat { body, until, line })
+    }
+
+    // ── expressions (precedence climbing) ──────────────────────────
+    pub fn parse_expr(&mut self) -> Expr {
+        self.parse_or()
+    }
+
+    fn parse_or(&mut self) -> Expr {
+        let mut lhs = self.parse_and();
+        loop {
+            let op = match self.peek() {
+                Tok::Kw(K::Or) => BinOp::Or,
+                Tok::Kw(K::Xor) => BinOp::Xor,
+                _ => break,
+            };
+            let line = self.line();
+            self.advance();
+            let rhs = self.parse_and();
+            lhs = Expr::Binary {
+                op,
+                lhs: Box::new(lhs),
+                rhs: Box::new(rhs),
+                line,
+            };
+        }
+        lhs
+    }
+
+    fn parse_and(&mut self) -> Expr {
+        let mut lhs = self.parse_cmp();
+        while matches!(self.peek(), Tok::Kw(K::And) | Tok::Amp) {
+            let op = BinOp::And;
+            let line = self.line();
+            self.advance();
+            let rhs = self.parse_cmp();
+            lhs = Expr::Binary {
+                op,
+                lhs: Box::new(lhs),
+                rhs: Box::new(rhs),
+                line,
+            };
+        }
+        lhs
+    }
+
+    fn parse_cmp(&mut self) -> Expr {
+        let mut lhs = self.parse_add();
+        loop {
+            let op = match self.peek() {
+                Tok::Eq => BinOp::Eq,
+                Tok::Ne => BinOp::Ne,
+                Tok::Lt => BinOp::Lt,
+                Tok::Le => BinOp::Le,
+                Tok::Gt => BinOp::Gt,
+                Tok::Ge => BinOp::Ge,
+                _ => break,
+            };
+            let line = self.line();
+            self.advance();
+            let rhs = self.parse_add();
+            lhs = Expr::Binary {
+                op,
+                lhs: Box::new(lhs),
+                rhs: Box::new(rhs),
+                line,
+            };
+        }
+        lhs
+    }
+
+    fn parse_add(&mut self) -> Expr {
+        let mut lhs = self.parse_mul();
+        loop {
+            let op = match self.peek() {
+                Tok::Plus => BinOp::Add,
+                Tok::Minus => BinOp::Sub,
+                _ => break,
+            };
+            let line = self.line();
+            self.advance();
+            let rhs = self.parse_mul();
+            lhs = Expr::Binary {
+                op,
+                lhs: Box::new(lhs),
+                rhs: Box::new(rhs),
+                line,
+            };
+        }
+        lhs
+    }
+
+    fn parse_mul(&mut self) -> Expr {
+        let mut lhs = self.parse_unary();
+        loop {
+            let op = match self.peek() {
+                Tok::Star => BinOp::Mul,
+                Tok::Slash => BinOp::Div,
+                Tok::Kw(K::Mod) => BinOp::Mod,
+                Tok::Power => BinOp::Pow,
+                _ => break,
+            };
+            let line = self.line();
+            self.advance();
+            let rhs = self.parse_unary();
+            lhs = Expr::Binary {
+                op,
+                lhs: Box::new(lhs),
+                rhs: Box::new(rhs),
+                line,
+            };
+        }
+        lhs
+    }
+
+    fn parse_unary(&mut self) -> Expr {
+        let line = self.line();
+        match self.peek() {
+            Tok::Kw(K::Not) => {
+                self.advance();
+                Expr::Unary {
+                    op: UnOp::Not,
+                    expr: Box::new(self.parse_unary()),
+                    line,
+                }
+            }
+            Tok::Minus => {
+                self.advance();
+                Expr::Unary {
+                    op: UnOp::Neg,
+                    expr: Box::new(self.parse_unary()),
+                    line,
+                }
+            }
+            _ => self.parse_postfix(),
+        }
+    }
+
+    fn parse_postfix(&mut self) -> Expr {
+        let mut e = self.parse_primary();
+        loop {
+            let line = self.line();
+            match self.peek() {
+                Tok::LBrack => {
+                    self.advance();
+                    let index = self.parse_expr();
+                    self.eat(&Tok::RBrack);
+                    e = Expr::Index {
+                        base: Box::new(e),
+                        index: Box::new(index),
+                        line,
+                    };
+                }
+                Tok::Dot => {
+                    self.advance();
+                    let field = self.ident().unwrap_or_default();
+                    e = Expr::Member {
+                        base: Box::new(e),
+                        field,
+                        line,
+                    };
+                }
+                _ => break,
+            }
+        }
+        e
+    }
+
+    fn parse_primary(&mut self) -> Expr {
+        let line = self.line();
+        match self.advance() {
+            Tok::Int(n) => Expr::Int(n, line),
+            Tok::Real(r) => Expr::Real(r, line),
+            Tok::Bool(b) => Expr::Bool(b, line),
+            Tok::Str(s) => Expr::Str(s, line),
+            Tok::Time(t) => Expr::Time(t, line),
+            Tok::LParen => {
+                let e = self.parse_expr();
+                self.eat(&Tok::RParen);
+                e
+            }
+            Tok::Ident(name) => {
+                if self.eat(&Tok::LParen) {
+                    let args = self.parse_call_args();
+                    Expr::Call {
+                        callee: name,
+                        args,
+                        line,
+                    }
+                } else {
+                    Expr::Ident(name, line)
+                }
+            }
+            // Unrecognized start of expression — yield a placeholder identifier.
+            _ => Expr::Ident(String::new(), line),
+        }
+    }
+
+    fn parse_call_args(&mut self) -> Vec<CallArg> {
+        let mut args = Vec::new();
+        if self.eat(&Tok::RParen) {
+            return args;
+        }
+        loop {
+            // Named arg: ident := expr  (peek two tokens).
+            if let Tok::Ident(name) = self.peek().clone() {
+                if matches!(
+                    self.toks.get(self.pos + 1).map(|t| &t.kind),
+                    Some(Tok::Assign)
+                ) {
+                    self.advance(); // ident
+                    self.advance(); // :=
+                    let value = self.parse_expr();
+                    args.push(CallArg {
+                        name: Some(name),
+                        value,
+                    });
+                    if self.eat(&Tok::Comma) {
+                        continue;
+                    }
+                    break;
+                }
+            }
+            let value = self.parse_expr();
+            args.push(CallArg { name: None, value });
+            if self.eat(&Tok::Comma) {
+                continue;
+            }
+            break;
+        }
+        self.eat(&Tok::RParen);
+        args
+    }
+}
+
+/// Parse ST source into its POUs.
+pub fn parse(src: &str) -> Vec<Pou> {
+    let toks = super::lexer::lex(src);
+    Parser::new(toks).parse_units()
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    const SAMPLE: &str = r#"
+PROGRAM Main
+VAR
+    idx : INT;
+    pw : STRING := 'admin123';
+    buf : ARRAY[0..9] OF INT;
+    ok : BOOL := FALSE;
+END_VAR
+    // a comment
+    IF idx > 0 THEN
+        buf[idx] := idx * 2;
+    ELSE
+        JMP done;
+    END_IF;
+    Comm(IP := '10.0.0.1', PORT := 502);
+done:
+    ok := TRUE;
+END_PROGRAM
+"#;
+
+    #[test]
+    fn parses_program_vars_and_body() {
+        let pous = parse(SAMPLE);
+        assert_eq!(pous.len(), 1, "one POU");
+        let p = &pous[0];
+        assert_eq!(p.name, "Main");
+        assert_eq!(p.kind, PouKind::Program);
+        // vars: idx, pw, buf, ok
+        assert_eq!(p.vars.len(), 4);
+        let pw = p.vars.iter().find(|v| v.name == "pw").expect("pw");
+        assert!(matches!(&pw.init, Some(Expr::Str(s, _)) if s == "admin123"));
+        let buf = p.vars.iter().find(|v| v.name == "buf").expect("buf");
+        assert_eq!(buf.array_bounds, Some((0, 9)));
+        // body has an IF, a Call, a Label, and an Assign
+        assert!(p.body.iter().any(|s| matches!(s, Stmt::If { .. })));
+        assert!(p
+            .body
+            .iter()
+            .any(|s| matches!(s, Stmt::Call { callee, .. } if callee == "Comm")));
+        assert!(p
+            .body
+            .iter()
+            .any(|s| matches!(s, Stmt::Label { name, .. } if name == "done")));
+    }
+
+    #[test]
+    fn jmp_inside_if_is_captured() {
+        let pous = parse(SAMPLE);
+        let p = &pous[0];
+        // find the IF, check its else branch has a JMP
+        let has_jmp = p.body.iter().any(|s| match s {
+            Stmt::If { else_body, .. } => else_body
+                .as_ref()
+                .map(|b| b.iter().any(|s| matches!(s, Stmt::Jump { .. })))
+                .unwrap_or(false),
+            _ => false,
+        });
+        assert!(has_jmp, "JMP should be parsed inside the ELSE branch");
+    }
+}

compliance-agent/src/pipeline/plc/plcopen.rs

@@ -0,0 +1,149 @@
+//! PLCopen XML → Structured Text POUs.
+//!
+//! A PLCopen project stores each POU as `<pou name=".." pouType="..">` with an
+//! `<interface>` (typed variable sections) and a `<body>`. We handle the
+//! Structured-Text body form (`<ST>…</ST>`); FBD/LD/SFC bodies are skipped.
+//!
+//! For each ST POU we reconstruct an equivalent ST source (a `VAR` block built
+//! from the interface + the ST body) and run it through the ST parser, so both
+//! raw `.st` files and PLCopen projects flow through one analysis path.
+
+use super::ast::Pou;
+use super::parser;
+
+/// Parse every Structured-Text POU out of a PLCopen XML document.
+pub fn parse_plcopen(xml: &str) -> Vec<Pou> {
+    let doc = match roxmltree::Document::parse(xml) {
+        Ok(d) => d,
+        Err(_) => return Vec::new(),
+    };
+    let mut pous = Vec::new();
+    for pou in doc.descendants().filter(|n| n.has_tag_name("pou")) {
+        let name = pou.attribute("name").unwrap_or("pou").to_string();
+        let pou_type = pou.attribute("pouType").unwrap_or("program");
+
+        // ST body text (skip non-ST bodies).
+        let Some(st_node) = pou
+            .descendants()
+            .find(|n| n.has_tag_name("ST") && n.ancestors().any(|a| a.has_tag_name("body")))
+        else {
+            continue;
+        };
+        let body = collect_text(st_node);
+        if body.trim().is_empty() {
+            continue;
+        }
+
+        let var_block = build_var_block(pou);
+        let kw = match pou_type.to_ascii_lowercase().as_str() {
+            "function" => "FUNCTION",
+            "functionblock" | "functionblocktype" => "FUNCTION_BLOCK",
+            _ => "PROGRAM",
+        };
+        let synthetic = format!("{kw} {name}\n{var_block}{body}\nEND_{kw}\n");
+        pous.extend(parser::parse(&synthetic));
+    }
+    pous
+}
+
+/// Concatenate all descendant text of a node (ST bodies are often wrapped in
+/// `<xhtml>` and may contain multiple text runs).
+fn collect_text(node: roxmltree::Node) -> String {
+    node.descendants()
+        .filter_map(|n| n.text())
+        .collect::<String>()
+}
+
+/// Build an ST `VAR … END_VAR` block from a POU's `<interface>` variable
+/// sections, so declarations (types, initial values) reach the rules.
+fn build_var_block(pou: roxmltree::Node) -> String {
+    let Some(interface) = pou.children().find(|n| n.has_tag_name("interface")) else {
+        return String::new();
+    };
+    let mut out = String::from("VAR\n");
+    let mut any = false;
+    for container in interface.children().filter(|n| n.is_element()) {
+        // localVars / inputVars / outputVars / inOutVars / tempVars / globalVars / externalVars
+        if !container.tag_name().name().ends_with("Vars") {
+            continue;
+        }
+        for var in container.children().filter(|n| n.has_tag_name("variable")) {
+            let Some(vname) = var.attribute("name") else {
+                continue;
+            };
+            let ty = var
+                .children()
+                .find(|n| n.has_tag_name("type"))
+                .map(type_name)
+                .unwrap_or_else(|| "BOOL".to_string());
+            let init = var
+                .children()
+                .find(|n| n.has_tag_name("initialValue"))
+                .and_then(initial_value);
+            match init {
+                Some(v) => out.push_str(&format!("  {vname} : {ty} := {v};\n")),
+                None => out.push_str(&format!("  {vname} : {ty};\n")),
+            }
+            any = true;
+        }
+    }
+    out.push_str("END_VAR\n");
+    if any {
+        out
+    } else {
+        String::new()
+    }
+}
+
+/// Render a PLCopen `<type>` element as an ST type string.
+fn type_name(type_node: roxmltree::Node) -> String {
+    let Some(inner) = type_node.children().find(|n| n.is_element()) else {
+        return "BOOL".to_string();
+    };
+    let tag = inner.tag_name().name();
+    match tag {
+        "derived" => inner.attribute("name").unwrap_or("DERIVED").to_string(),
+        "array" => {
+            let dim = inner.children().find(|n| n.has_tag_name("dimension"));
+            let (lo, hi) = dim
+                .map(|d| {
+                    (
+                        d.attribute("lower").unwrap_or("0").to_string(),
+                        d.attribute("upper").unwrap_or("0").to_string(),
+                    )
+                })
+                .unwrap_or_else(|| ("0".to_string(), "0".to_string()));
+            let base = inner
+                .children()
+                .find(|n| n.has_tag_name("baseType"))
+                .map(type_name)
+                .unwrap_or_else(|| "INT".to_string());
+            format!("ARRAY[{lo}..{hi}] OF {base}")
+        }
+        "string" | "wstring" => "STRING".to_string(),
+        // BOOL, INT, DINT, REAL, TIME, ... — the tag name is the ST type.
+        other => other.to_ascii_uppercase(),
+    }
+}
+
+/// Extract an initial value as an ST literal (quoting strings).
+fn initial_value(iv: roxmltree::Node) -> Option<String> {
+    let simple = iv.descendants().find(|n| n.has_tag_name("simpleValue"))?;
+    let raw = simple.attribute("value")?.trim().to_string();
+    if raw.is_empty() {
+        return None;
+    }
+    // Numbers / booleans / time literals pass through; everything else is a
+    // string literal.
+    let is_scalar = raw.eq_ignore_ascii_case("true")
+        || raw.eq_ignore_ascii_case("false")
+        || raw.starts_with(['T', 't', 'D', 'd']) && raw.contains('#')
+        || raw
+            .chars()
+            .all(|c| c.is_ascii_digit() || c == '.' || c == '-' || c == '+');
+    if is_scalar || raw.starts_with('\'') || raw.starts_with('"') {
+        Some(raw)
+    } else {
+        Some(format!("'{}'", raw.replace('\'', "''")))
+    }
+}

compliance-agent/src/pipeline/plc/rules.rs

@@ -0,0 +1,632 @@
+//! Semantic control-logic security rules over the Structured Text AST.
+//!
+//! Each rule walks the parsed [`Pou`] and yields [`RuleHit`]s the scanner turns
+//! into findings. Rules reason over structure (declarations, assignments, calls,
+//! array accesses, division, jumps) rather than raw text, so they see through
+//! formatting and comments.
+
+use std::collections::{HashMap, HashSet};
+
+use compliance_core::models::Severity;
+
+use super::ast::*;
+
+/// One rule match within a POU.
+pub struct RuleHit {
+    pub line: u32,
+    pub severity: Severity,
+    pub rule_id: &'static str,
+    pub title: String,
+    pub description: String,
+    pub cwe: Option<&'static str>,
+    pub remediation: &'static str,
+}
+
+/// Run every rule over a POU.
+pub fn analyze(pou: &Pou) -> Vec<RuleHit> {
+    let mut hits = Vec::new();
+    let ctx = Ctx::build(pou);
+
+    // Declaration-level rules.
+    for v in &pou.vars {
+        if let Some(init) = &v.init {
+            check_credential_binding(&v.name, init, &pou.name, &mut hits);
+            check_default_password(init, &v.name, &pou.name, &mut hits);
+        }
+    }
+
+    // Body walk.
+    walk(&pou.body, pou, &ctx, &GuardSet::default(), &mut hits);
+    hits
+}
+
+/// Per-POU context precomputed once.
+struct Ctx {
+    /// Names declared in VAR_INPUT (untrusted / externally driven).
+    input_vars: HashSet<String>,
+    /// Array variable name → declared (lo, hi) bounds.
+    arrays: HashMap<String, (i64, i64)>,
+}
+
+impl Ctx {
+    fn build(pou: &Pou) -> Self {
+        let mut input_vars = HashSet::new();
+        let mut arrays = HashMap::new();
+        for v in &pou.vars {
+            if v.section == VarSection::Input {
+                input_vars.insert(v.name.to_ascii_lowercase());
+            }
+            if let Some(b) = v.array_bounds {
+                arrays.insert(v.name.to_ascii_lowercase(), b);
+            }
+        }
+        Self { input_vars, arrays }
+    }
+}
+
+/// Variables proven non-zero on the current control-flow path (from enclosing
+/// `IF`/`WHILE` conditions), so guarded divisions aren't false-flagged.
+#[derive(Default, Clone)]
+struct GuardSet {
+    nonzero: HashSet<String>,
+}
+
+impl GuardSet {
+    fn with(&self, names: Vec<String>) -> Self {
+        let mut g = self.clone();
+        g.nonzero.extend(names);
+        g
+    }
+    fn is_nonzero(&self, name: &str) -> bool {
+        self.nonzero.contains(name)
+    }
+}
+
+/// Variable names a condition proves non-zero (`v <> 0`, `v > 0`, `v >= 1`,
+/// `v < 0`, and conjunctions thereof).
+fn guards_from_cond(cond: &Expr) -> Vec<String> {
+    let mut out = Vec::new();
+    collect_nonzero(cond, &mut out);
+    out
+}
+
+fn collect_nonzero(e: &Expr, out: &mut Vec<String>) {
+    let Expr::Binary { op, lhs, rhs, .. } = e else {
+        return;
+    };
+    let is_zero = |x: &Expr| {
+        matches!(x, Expr::Int(0, _)) || matches!(x, Expr::Real(r, _) if r.abs() < f64::EPSILON)
+    };
+    let int_of = |x: &Expr| match x {
+        Expr::Int(n, _) => Some(*n),
+        _ => None,
+    };
+    match op {
+        BinOp::And => {
+            collect_nonzero(lhs, out);
+            collect_nonzero(rhs, out);
+        }
+        BinOp::Ne => {
+            if let (Some(v), true) = (lhs.as_ident(), is_zero(rhs)) {
+                out.push(v.to_ascii_lowercase());
+            }
+            if let (true, Some(v)) = (is_zero(lhs), rhs.as_ident()) {
+                out.push(v.to_ascii_lowercase());
+            }
+        }
+        BinOp::Gt | BinOp::Lt => {
+            // v > 0  or  v < 0
+            if let (Some(v), true) = (lhs.as_ident(), is_zero(rhs)) {
+                out.push(v.to_ascii_lowercase());
+            }
+        }
+        BinOp::Ge => {
+            // v >= n, n >= 1
+            if let (Some(v), Some(n)) = (lhs.as_ident(), int_of(rhs)) {
+                if n >= 1 {
+                    out.push(v.to_ascii_lowercase());
+                }
+            }
+        }
+        _ => {}
+    }
+}
+
+// ── the walker ─────────────────────────────────────────────────────
+fn walk(stmts: &[Stmt], pou: &Pou, ctx: &Ctx, guards: &GuardSet, hits: &mut Vec<RuleHit>) {
+    for s in stmts {
+        match s {
+            Stmt::Assign {
+                target,
+                value,
+                line,
+            } => {
+                check_safety_bypass(target, value, *line, &pou.name, hits);
+                // A string bound to a secret-looking target is a credential.
+                if let Some(name) = flatten_ident(target) {
+                    check_credential_binding(&name, value, &pou.name, hits);
+                    check_default_password(value, &name, &pou.name, hits);
+                }
+                walk_expr(target, pou, ctx, guards, hits);
+                walk_expr(value, pou, ctx, guards, hits);
+            }
+            Stmt::Call { callee, args, line } => {
+                check_insecure_comm(callee, args, *line, &pou.name, hits);
+                check_credentials_in_call(callee, args, *line, &pou.name, hits);
+                for a in args {
+                    walk_expr(&a.value, pou, ctx, guards, hits);
+                }
+            }
+            Stmt::Jump { label, line } => hits.push(RuleHit {
+                line: *line,
+                severity: Severity::Medium,
+                rule_id: "plc-unstructured-jump",
+                title: "Unstructured jump (JMP) in control logic".to_string(),
+                description: format!(
+                    "POU `{}` uses `JMP {label}`. Unstructured jumps make control flow hard to \
+                     verify and can bypass safety interlocks or leave outputs in an undefined \
+                     state on unexpected paths.",
+                    pou.name
+                ),
+                cwe: Some("CWE-691"),
+                remediation: "Replace JMP with structured constructs (IF/CASE/loops); reserve \
+                              jumps for well-reviewed state machines only.",
+            }),
+            Stmt::If {
+                branches,
+                else_body,
+                ..
+            } => {
+                for (cond, body) in branches {
+                    walk_expr(cond, pou, ctx, guards, hits);
+                    let child = guards.with(guards_from_cond(cond));
+                    walk(body, pou, ctx, &child, hits);
+                }
+                if let Some(b) = else_body {
+                    walk(b, pou, ctx, guards, hits);
+                }
+            }
+            Stmt::Case {
+                selector,
+                arms,
+                else_body,
+                ..
+            } => {
+                walk_expr(selector, pou, ctx, guards, hits);
+                for (labels, body) in arms {
+                    for l in labels {
+                        walk_expr(l, pou, ctx, guards, hits);
+                    }
+                    walk(body, pou, ctx, guards, hits);
+                }
+                if let Some(b) = else_body {
+                    walk(b, pou, ctx, guards, hits);
+                }
+            }
+            Stmt::For {
+                from, to, by, body, ..
+            } => {
+                walk_expr(from, pou, ctx, guards, hits);
+                walk_expr(to, pou, ctx, guards, hits);
+                if let Some(b) = by {
+                    walk_expr(b, pou, ctx, guards, hits);
+                }
+                walk(body, pou, ctx, guards, hits);
+            }
+            Stmt::While { cond, body, .. } => {
+                walk_expr(cond, pou, ctx, guards, hits);
+                let child = guards.with(guards_from_cond(cond));
+                walk(body, pou, ctx, &child, hits);
+            }
+            Stmt::Repeat { body, until, .. } => {
+                walk(body, pou, ctx, guards, hits);
+                walk_expr(until, pou, ctx, guards, hits);
+            }
+            Stmt::Return { .. } | Stmt::Exit { .. } | Stmt::Label { .. } => {}
+        }
+    }
+}
+
+fn walk_expr(e: &Expr, pou: &Pou, ctx: &Ctx, guards: &GuardSet, hits: &mut Vec<RuleHit>) {
+    match e {
+        Expr::Index { base, index, line } => {
+            check_array_bounds(base, index, *line, ctx, &pou.name, hits);
+            walk_expr(base, pou, ctx, guards, hits);
+            walk_expr(index, pou, ctx, guards, hits);
+        }
+        Expr::Binary { op, lhs, rhs, line } => {
+            if matches!(op, BinOp::Div | BinOp::Mod) {
+                check_division(rhs, *line, &pou.name, guards, hits);
+            }
+            walk_expr(lhs, pou, ctx, guards, hits);
+            walk_expr(rhs, pou, ctx, guards, hits);
+        }
+        Expr::Unary { expr, .. } => walk_expr(expr, pou, ctx, guards, hits),
+        Expr::Member { base, .. } => walk_expr(base, pou, ctx, guards, hits),
+        Expr::Call { args, .. } => {
+            for a in args {
+                walk_expr(&a.value, pou, ctx, guards, hits);
+            }
+        }
+        _ => {}
+    }
+}
+
+// ── individual rules ───────────────────────────────────────────────
+const SECRET_HINTS: &[&str] = &[
+    "password",
+    "passwd",
+    "pwd",
+    "secret",
+    "apikey",
+    "api_key",
+    "token",
+    "credential",
+    "privkey",
+    "private_key",
+    "passphrase",
+];
+
+const DEFAULT_PASSWORDS: &[&str] = &[
+    "admin",
+    "administrator",
+    "password",
+    "passwd",
+    "1234",
+    "12345",
+    "123456",
+    "0000",
+    "1111",
+    "root",
+    "default",
+    "admin123",
+    "changeme",
+    "letmein",
+    "guest",
+    "user",
+    "system",
+    "plc",
+    "codesys",
+];
+
+const COMM_FB_HINTS: &[&str] = &[
+    "modbus", "tcp", "udp", "socket", "mqtt", "opcua", "opc_ua", "ethernet", "ethip", "enip",
+    "dnp3", "ftp", "telnet", "http", "send", "connect", "sock", "comm", "profinet", "s7",
+];
+
+/// Insecure cleartext service ports.
+const INSECURE_PORTS: &[i64] = &[21, 23, 80, 502, 20000, 44818, 102];
+
+fn check_credential_binding(var_name: &str, value: &Expr, pou: &str, hits: &mut Vec<RuleHit>) {
+    let name = var_name.to_ascii_lowercase();
+    let looks_secret = SECRET_HINTS.iter().any(|h| name.contains(h));
+    if looks_secret {
+        if let Expr::Str(s, line) = value {
+            if !s.is_empty() {
+                hits.push(RuleHit {
+                    line: *line,
+                    severity: Severity::High,
+                    rule_id: "plc-hardcoded-credential",
+                    title: "Hardcoded credential in PLC program".to_string(),
+                    description: format!(
+                        "POU `{pou}` binds a hardcoded secret to `{var_name}`. Credentials \
+                         embedded in control logic are extracted trivially from a project export \
+                         or a firmware dump and cannot be rotated without a redeploy."
+                    ),
+                    cwe: Some("CWE-798"),
+                    remediation: "Store secrets outside the program (secure parameter store / \
+                                  operator-entered, retained-but-protected memory); never commit \
+                                  them to the POU.",
+                });
+            }
+        }
+    }
+}
+
+fn check_default_password(value: &Expr, var_name: &str, pou: &str, hits: &mut Vec<RuleHit>) {
+    if let Expr::Str(s, line) = value {
+        let lower = s.to_ascii_lowercase();
+        if DEFAULT_PASSWORDS.contains(&lower.as_str()) {
+            hits.push(RuleHit {
+                line: *line,
+                severity: Severity::Critical,
+                rule_id: "plc-default-password",
+                title: "Default/weak password in PLC program".to_string(),
+                description: format!(
+                    "POU `{pou}` uses the well-known default/weak password `{s}` (bound to \
+                     `{var_name}`). Default PLC credentials are the first thing an attacker tries."
+                ),
+                cwe: Some("CWE-1393"),
+                remediation:
+                    "Require a strong, unique, operator-set password; block commissioning \
+                              until the default is changed.",
+            });
+        }
+    }
+}
+
+fn check_credentials_in_call(
+    callee: &str,
+    args: &[CallArg],
+    line: u32,
+    pou: &str,
+    hits: &mut Vec<RuleHit>,
+) {
+    for a in args {
+        if let Some(name) = &a.name {
+            let n = name.to_ascii_lowercase();
+            if SECRET_HINTS.iter().any(|h| n.contains(h)) {
+                if let Expr::Str(s, l) = &a.value {
+                    if !s.is_empty() {
+                        hits.push(RuleHit {
+                            line: *l,
+                            severity: Severity::High,
+                            rule_id: "plc-hardcoded-credential",
+                            title: "Hardcoded credential passed to a function block".to_string(),
+                            description: format!(
+                                "POU `{pou}` passes a hardcoded secret as `{name}` to `{callee}`."
+                            ),
+                            cwe: Some("CWE-798"),
+                            remediation: "Supply credentials from protected configuration at \
+                                          runtime, not as a literal argument.",
+                        });
+                    }
+                }
+            }
+        }
+    }
+    let _ = line;
+}
+
+fn check_safety_bypass(target: &Expr, value: &Expr, line: u32, pou: &str, hits: &mut Vec<RuleHit>) {
+    let Some(name) = flatten_ident(target) else {
+        return;
+    };
+    let n = name.to_ascii_lowercase();
+    let safety = [
+        "safety",
+        "estop",
+        "e_stop",
+        "emergency",
+        "interlock",
+        "guard",
+        "permit",
+    ]
+    .iter()
+    .any(|h| n.contains(h));
+    let watchdog = n.contains("watchdog") || n.contains("wdt");
+    // A safety enable / interlock / watchdog signal driven to FALSE or 0 in
+    // application logic is a bypass (e.g. `Safety_Enable := FALSE`, `Watchdog_Kick := 0`).
+    let disabling = matches!(value, Expr::Bool(false, _)) || matches!(value, Expr::Int(0, _));
+    if (safety || watchdog) && disabling {
+        hits.push(RuleHit {
+            line,
+            severity: Severity::Critical,
+            rule_id: "plc-safety-bypass",
+            title: "Safety interlock / watchdog disabled in logic".to_string(),
+            description: format!(
+                "POU `{pou}` disables a safety-related signal (`{name}`) in program logic. \
+                 Bypassing interlocks or watchdogs in code defeats the plant's protective \
+                 functions and is a direct hazard."
+            ),
+            cwe: Some("CWE-1384"),
+            remediation: "Never disable safety functions from application logic; safety must be \
+                          handled by a certified safety controller / hard-wired circuit.",
+        });
+    }
+}
+
+fn check_array_bounds(
+    base: &Expr,
+    index: &Expr,
+    line: u32,
+    ctx: &Ctx,
+    pou: &str,
+    hits: &mut Vec<RuleHit>,
+) {
+    // Only reason about arrays we know the bounds of.
+    let Some(arr_name) = base.as_ident() else {
+        return;
+    };
+    if !ctx.arrays.contains_key(&arr_name.to_ascii_lowercase()) {
+        return;
+    }
+    // Index by an untrusted input variable → potential out-of-bounds access.
+    if let Some(idx_name) = index.as_ident() {
+        if ctx.input_vars.contains(&idx_name.to_ascii_lowercase()) {
+            hits.push(RuleHit {
+                line,
+                severity: Severity::High,
+                rule_id: "plc-array-unchecked-index",
+                title: "Array indexed by unvalidated input".to_string(),
+                description: format!(
+                    "POU `{pou}` indexes array `{arr_name}` with the input variable `{idx_name}` \
+                     without a validated bounds check. An out-of-range index corrupts adjacent \
+                     memory or faults the PLC (loss of control)."
+                ),
+                cwe: Some("CWE-129"),
+                remediation: "Clamp or validate the index against the array bounds (e.g. \
+                              `LIMIT`/explicit `IF idx >= lo AND idx <= hi`) before the access.",
+            });
+        }
+    }
+}
+
+fn check_division(
+    divisor: &Expr,
+    line: u32,
+    pou: &str,
+    guards: &GuardSet,
+    hits: &mut Vec<RuleHit>,
+) {
+    // A divisor proven non-zero by an enclosing guard is safe.
+    if let Expr::Ident(name, _) = divisor {
+        if guards.is_nonzero(&name.to_ascii_lowercase()) {
+            return;
+        }
+    }
+    // Flag division by a variable (could be zero); nonzero literals are fine.
+    let risky = matches!(
+        divisor,
+        Expr::Ident(_, _) | Expr::Member { .. } | Expr::Index { .. } | Expr::Int(0, _)
+    );
+    if risky {
+        hits.push(RuleHit {
+            line,
+            severity: Severity::Medium,
+            rule_id: "plc-division-by-zero",
+            title: "Division by a variable without a zero-guard".to_string(),
+            description: format!(
+                "POU `{pou}` divides by a variable that is not proven non-zero. A zero divisor \
+                 raises a PLC exception and can halt the scan cycle (denial of control)."
+            ),
+            cwe: Some("CWE-369"),
+            remediation: "Guard the divisor (`IF d <> 0 THEN …`) or use a safe-divide helper that \
+                          returns a defined value for a zero denominator.",
+        });
+    }
+}
+
+fn check_insecure_comm(
+    callee: &str,
+    args: &[CallArg],
+    line: u32,
+    pou: &str,
+    hits: &mut Vec<RuleHit>,
+) {
+    let c = callee.to_ascii_lowercase();
+    let is_comm = COMM_FB_HINTS.iter().any(|h| c.contains(h));
+    if !is_comm {
+        return;
+    }
+    // Auth/encryption explicitly disabled.
+    for a in args {
+        if let Some(name) = &a.name {
+            let n = name.to_ascii_lowercase();
+            let security_flag = ["auth", "secure", "encrypt", "tls", "ssl", "authentication"]
+                .iter()
+                .any(|h| n.contains(h));
+            if security_flag && matches!(a.value, Expr::Bool(false, _)) {
+                hits.push(RuleHit {
+                    line,
+                    severity: Severity::High,
+                    rule_id: "plc-insecure-comm",
+                    title: "Network communication with security disabled".to_string(),
+                    description: format!(
+                        "POU `{pou}` calls `{callee}` with `{name} := FALSE`, disabling \
+                         authentication/encryption on an industrial network link."
+                    ),
+                    cwe: Some("CWE-319"),
+                    remediation: "Enable authentication + transport encryption; segment OT \
+                                  networks and restrict the endpoint to trusted peers.",
+                });
+            }
+        }
+        // Well-known cleartext port literal.
+        if let Expr::Int(p, _) = &a.value {
+            if INSECURE_PORTS.contains(p) {
+                hits.push(RuleHit {
+                    line,
+                    severity: Severity::Medium,
+                    rule_id: "plc-insecure-protocol-port",
+                    title: "Cleartext industrial protocol port".to_string(),
+                    description: format!(
+                        "POU `{pou}` opens `{callee}` on port {p}, a well-known cleartext OT \
+                         protocol port with no built-in authentication or encryption."
+                    ),
+                    cwe: Some("CWE-319"),
+                    remediation: "Front the protocol with a secure gateway/VPN, or use the \
+                                  authenticated/encrypted variant; never expose it to untrusted \
+                                  networks.",
+                });
+            }
+        }
+    }
+    let _ = line;
+}
+
+/// The dotted/base identifier of an lvalue expression (`a`, `a.b` → `a.b`,
+/// `a[i]` → `a`), for name-based rules.
+fn flatten_ident(e: &Expr) -> Option<String> {
+    match e {
+        Expr::Ident(n, _) => Some(n.clone()),
+        Expr::Member { base, field, .. } => flatten_ident(base).map(|b| format!("{b}.{field}")),
+        Expr::Index { base, .. } => flatten_ident(base),
+        _ => None,
+    }
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use crate::pipeline::plc::parser;
+
+    const VULN: &str = r#"
+FUNCTION_BLOCK CommCtrl
+VAR_INPUT
+    cmdIndex : INT;
+END_VAR
+VAR
+    Password : STRING := 'admin123';
+    buffer : ARRAY[0..15] OF INT;
+    Safety_Enable : BOOL := TRUE;
+    divisor : INT;
+    result : INT;
+END_VAR
+    Safety_Enable := FALSE;
+    result := 100 / divisor;
+    buffer[cmdIndex] := 1;
+    Modbus_Connect(IP := '192.168.0.10', PORT := 502, AUTH := FALSE);
+    IF cmdIndex > 100 THEN
+        JMP fault;
+    END_IF;
+fault:
+    result := 0;
+END_FUNCTION_BLOCK
+"#;
+
+    fn rule_ids(src: &str) -> Vec<&'static str> {
+        parser::parse(src)
+            .iter()
+            .flat_map(analyze)
+            .map(|h| h.rule_id)
+            .collect()
+    }
+
+    #[test]
+    fn vulnerable_program_triggers_every_rule() {
+        let ids = rule_ids(VULN);
+        for expected in [
+            "plc-hardcoded-credential",
+            "plc-default-password",
+            "plc-safety-bypass",
+            "plc-division-by-zero",
+            "plc-array-unchecked-index",
+            "plc-insecure-comm",
+            "plc-insecure-protocol-port",
+            "plc-unstructured-jump",
+        ] {
+            assert!(
+                ids.contains(&expected),
+                "expected rule {expected}, got {ids:?}"
+            );
+        }
+    }
+
+    #[test]
+    fn clean_program_has_no_findings() {
+        let clean = r#"
+PROGRAM Clean
+VAR
+    a : INT := 5;
+    b : INT := 3;
+    total : INT;
+END_VAR
+    IF b <> 0 THEN
+        total := a / b;
+    END_IF;
+END_PROGRAM
+"#;
+        assert!(rule_ids(clean).is_empty(), "clean program should be quiet");
+    }
+}

compliance-agent/src/pipeline/pr_review.rs

@@ -1,3 +1,4 @@
+use crate::pipeline::repo_view::RepoView;
 use compliance_core::models::*;
 
 use super::dedup::compute_fingerprint;
@@ -14,7 +15,7 @@ impl PipelineOrchestrator {
     #[tracing::instrument(skip_all, fields(repo_id = %repo_id, pr_number))]
     pub async fn run_pr_review(
         &self,
-        repo: &TrackedRepository,
+        repo: &RepoView,
         repo_id: &str,
         pr_number: u64,
         base_sha: &str,

compliance-agent/src/pipeline/repo_view.rs

@@ -0,0 +1,74 @@
+//! `RepoView` — an internal, non-persisted view of a code target for the scan
+//! pipeline.
+//!
+//! It replaces the old persisted `TrackedRepository` model. The pipeline
+//! (SAST → SBOM → CVE → triage → issues → DAST, and PR review) only ever needs a
+//! flat bundle of git + issue-tracker + auth fields; those are projected from an
+//! [`OnboardedTarget`] and its code [`Artifact`] by [`RepoView::from_target`].
+//! Nothing here is written to Mongo — onboarded targets are the sole persisted
+//! entity.
+
+use compliance_core::models::{Artifact, OnboardedTarget, TrackerType};
+
+/// A flat, pipeline-facing view of a code target. Built from an onboarded
+/// target; never persisted.
+#[derive(Debug, Clone)]
+pub struct RepoView {
+    /// The onboarded target's id (used as `repo_id` across findings/sbom/etc.).
+    pub id: Option<mongodb::bson::oid::ObjectId>,
+    pub name: String,
+    pub git_url: String,
+    pub default_branch: String,
+    pub local_path: Option<String>,
+    pub scan_schedule: Option<String>,
+    pub webhook_enabled: bool,
+    pub webhook_secret: Option<String>,
+    pub tracker_type: Option<TrackerType>,
+    pub tracker_owner: Option<String>,
+    pub tracker_repo: Option<String>,
+    pub tracker_token: Option<String>,
+    pub auth_token: Option<String>,
+    pub auth_username: Option<String>,
+    pub last_scanned_commit: Option<String>,
+    pub findings_count: u32,
+}
+
+impl RepoView {
+    /// Project an onboarded target + its code artifact into a pipeline view.
+    pub fn from_target(target: &OnboardedTarget, code: &Artifact) -> Self {
+        let mut view = Self {
+            id: target.id,
+            name: target.name.clone(),
+            git_url: code.source_ref.clone(),
+            default_branch: "main".to_string(),
+            local_path: None,
+            scan_schedule: target.scan_schedule.clone(),
+            webhook_enabled: target.webhook_enabled,
+            webhook_secret: target.webhook_secret.clone(),
+            tracker_type: None,
+            tracker_owner: None,
+            tracker_repo: None,
+            tracker_token: None,
+            auth_token: None,
+            auth_username: None,
+            last_scanned_commit: None,
+            findings_count: target.findings_count,
+        };
+        if let Some(git) = &code.git {
+            view.default_branch = git.default_branch.clone();
+            view.last_scanned_commit = git.last_scanned_commit.clone();
+            view.local_path = git.local_path.clone();
+        }
+        if let Some(auth) = &code.auth {
+            view.auth_token = auth.secret.clone();
+            view.auth_username = auth.username.clone();
+        }
+        if let Some(it) = &target.scan_config.issue_tracker {
+            view.tracker_type = it.tracker_type.clone();
+            view.tracker_owner = it.owner.clone();
+            view.tracker_repo = it.repo.clone();
+            view.tracker_token = it.token.clone();
+        }
+        view
+    }
+}

compliance-agent/src/scheduler.rs

@@ -288,25 +288,25 @@ async fn scan_all_repos(agent: &ComplianceAgent, tenant_id: &str) {
         None => return,
     };
 
-    let cursor = match db.repositories().find(doc! {}).await {
+    let cursor = match db.onboarded_targets().find(doc! {}).await {
         Ok(c) => c,
         Err(e) => {
-            tracing::error!("Failed to list repos for tenant '{tenant_id}': {e}");
+            tracing::error!("Failed to list targets for tenant '{tenant_id}': {e}");
             return;
         }
     };
 
-    let repos: Vec<_> = cursor.filter_map(|r| async { r.ok() }).collect().await;
+    let targets: Vec<_> = cursor.filter_map(|r| async { r.ok() }).collect().await;
 
-    for repo in repos {
+    for target in targets {
-        let repo_id = repo.id.map(|id| id.to_hex()).unwrap_or_default();
+        let target_id = target.id.map(|id| id.to_hex()).unwrap_or_default();
         if let Err(e) = agent
-            .run_scan(tenant_id, &repo_id, ScanTrigger::Scheduled)
+            .run_target_scan(tenant_id, &target_id, ScanTrigger::Scheduled)
             .await
         {
             tracing::error!(
                 "Scheduled scan failed for {} (tenant '{tenant_id}'): {e}",
-                repo.name
+                target.name
             );
         }
     }
@@ -348,7 +348,7 @@ async fn monitor_cves(agent: &ComplianceAgent, tenant_id: &str) {
         std::collections::HashMap::new();
     for rid in &repo_ids {
         if let Ok(oid) = mongodb::bson::oid::ObjectId::parse_str(rid) {
-            if let Ok(Some(repo)) = db.repositories().find_one(doc! { "_id": oid }).await {
+            if let Ok(Some(repo)) = db.onboarded_targets().find_one(doc! { "_id": oid }).await {
                 repo_names.insert(rid.clone(), repo.name.clone());
             }
         }

compliance-agent/src/webhooks/gitea.rs

@@ -31,7 +31,7 @@ pub async fn handle_gitea_webhook(
         }
     };
     let repo = match db
-        .repositories()
+        .onboarded_targets()
         .find_one(mongodb::bson::doc! { "_id": oid })
         .await
     {

compliance-agent/src/webhooks/github.rs

@@ -31,7 +31,7 @@ pub async fn handle_github_webhook(
         }
     };
     let repo = match db
-        .repositories()
+        .onboarded_targets()
         .find_one(mongodb::bson::doc! { "_id": oid })
         .await
     {

compliance-agent/src/webhooks/gitlab.rs

@@ -27,7 +27,7 @@ pub async fn handle_gitlab_webhook(
         }
     };
     let repo = match db
-        .repositories()
+        .onboarded_targets()
         .find_one(mongodb::bson::doc! { "_id": oid })
         .await
     {

compliance-agent/tests/common/mod.rs

@@ -25,8 +25,9 @@ impl TestServer {
         let mongodb_uri = std::env::var("TEST_MONGODB_URI")
             .unwrap_or_else(|_| "mongodb://root:example@localhost:27017/?authSource=admin".into());
 
-        // Unique database name per test run to avoid collisions
+        // Unique db-name prefix per run. Must fit the pool's 30-char cap
-        let db_name = format!("test_{}", uuid::Uuid::new_v4().simple());
+        // (`<prefix>_<32 hex>` <= 63), so use a 16-hex-char suffix.
+        let db_name = format!("t_{}", &uuid::Uuid::new_v4().simple().to_string()[..16]);
 
         let db_pool = DatabasePool::connect(&mongodb_uri, &db_name)
             .await

compliance-agent/tests/integration/api/cascade_delete.rs

@@ -113,15 +113,16 @@ async fn delete_repo_cascades_to_dast_and_pentest_data() {
     // Create a repo
     let resp = server
         .post(
-            "/api/v1/repositories",
+            "/api/v1/targets",
             &json!({
                 "name": "cascade-test",
-                "git_url": "https://github.com/example/cascade-test.git",
+                "target_type": "web_app",
+                "artifacts": [{ "kind": "git_repo", "source_ref": "https://github.com/example/cascade-test.git", "branch": "main" }],
             }),
         )
         .await;
     let body: serde_json::Value = resp.json().await.unwrap();
-    let repo_id = body["data"]["id"].as_str().unwrap().to_string();
+    let repo_id = body["data"]["_id"]["$oid"].as_str().unwrap().to_string();
 
     // Insert DAST target linked to repo
     let target_id = insert_dast_target(&server, &repo_id, "cascade-target").await;
@@ -140,9 +141,7 @@ async fn delete_repo_cascades_to_dast_and_pentest_data() {
     assert_eq!(count_docs(&server, "dast_findings").await, 1);
 
     // Delete the repo
-    let resp = server
+    let resp = server.delete(&format!("/api/v1/targets/{repo_id}")).await;
-        .delete(&format!("/api/v1/repositories/{repo_id}"))
-        .await;
     assert_eq!(resp.status(), 200);
 
     // All downstream data should be gone
@@ -161,15 +160,16 @@ async fn delete_repo_cascades_sast_findings_and_sbom() {
     // Create a repo
     let resp = server
         .post(
-            "/api/v1/repositories",
+            "/api/v1/targets",
             &json!({
                 "name": "sast-cascade",
-                "git_url": "https://github.com/example/sast-cascade.git",
+                "target_type": "web_app",
+                "artifacts": [{ "kind": "git_repo", "source_ref": "https://github.com/example/sast-cascade.git", "branch": "main" }],
             }),
         )
         .await;
     let body: serde_json::Value = resp.json().await.unwrap();
-    let repo_id = body["data"]["id"].as_str().unwrap().to_string();
+    let repo_id = body["data"]["_id"]["$oid"].as_str().unwrap().to_string();
 
     // Insert SAST finding and SBOM entry
     let mongodb_uri = std::env::var("TEST_MONGODB_URI")
@@ -209,9 +209,7 @@ async fn delete_repo_cascades_sast_findings_and_sbom() {
     assert_eq!(count_docs(&server, "sbom_entries").await, 1);
 
     // Delete repo
-    server
+    server.delete(&format!("/api/v1/targets/{repo_id}")).await;
-        .delete(&format!("/api/v1/repositories/{repo_id}"))
-        .await;
 
     // Both should be gone
     assert_eq!(count_docs(&server, "findings").await, 0);

compliance-agent/tests/integration/api/mod.rs

@@ -2,5 +2,5 @@ mod cascade_delete;
 mod dast;
 mod findings;
 mod health;
-mod repositories;
+mod onboarding;
 mod stats;

compliance-agent/tests/integration/api/onboarding.rs

@@ -0,0 +1,115 @@
+use crate::common::TestServer;
+use serde_json::json;
+
+#[tokio::test]
+async fn create_list_and_applicable_scans() {
+    let server = TestServer::start().await;
+
+    // Initially empty.
+    let resp = server.get("/api/v1/targets").await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 0);
+
+    // Create a web-app target with a git repo + a live URL.
+    let resp = server
+        .post(
+            "/api/v1/targets",
+            &json!({
+                "name": "acme-web",
+                "target_type": "web_app",
+                "artifacts": [
+                    { "kind": "git_repo", "source_ref": "https://git/acme.git", "branch": "main" },
+                    { "kind": "live_url", "source_ref": "https://acme.example.com" }
+                ]
+            }),
+        )
+        .await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let id = body["data"]["_id"]["$oid"].as_str().unwrap().to_string();
+    assert!(!id.is_empty());
+    assert_eq!(body["data"]["artifacts"].as_array().unwrap().len(), 2);
+
+    // List returns it.
+    let resp = server.get("/api/v1/targets").await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"].as_array().unwrap().len(), 1);
+
+    // Applicable scans: SAST present + DAST offered (live URL present), pentest supported.
+    let resp = server
+        .get(&format!("/api/v1/targets/{id}/applicable-scans"))
+        .await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let scans = body["data"]["scans"].as_array().unwrap();
+    let names: Vec<&str> = scans.iter().filter_map(|s| s["scan"].as_str()).collect();
+    assert!(names.contains(&"sast"));
+    assert!(names.contains(&"dast"));
+    assert_eq!(body["data"]["pentest_supported"], true);
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn detect_classifies_a_plc_target() {
+    let server = TestServer::start().await;
+
+    // A PLC project artifact is a strong kind-based signal.
+    let resp = server
+        .post(
+            "/api/v1/targets",
+            &json!({
+                "name": "line-controller",
+                "target_type": "backend_service", // deliberately wrong; detect should suggest PLC
+                "artifacts": [
+                    { "kind": "plc_project", "source_ref": "line.xml", "plc_format": "plcopen_xml" }
+                ]
+            }),
+        )
+        .await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let id = body["data"]["_id"]["$oid"].as_str().unwrap().to_string();
+
+    let resp = server
+        .post(&format!("/api/v1/targets/{id}/detect"), &json!({}))
+        .await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"]["classification"]["suggested"], "plc_sps");
+
+    server.cleanup().await;
+}
+
+#[tokio::test]
+async fn add_artifact_and_delete_target() {
+    let server = TestServer::start().await;
+
+    let resp = server
+        .post(
+            "/api/v1/targets",
+            &json!({ "name": "svc", "target_type": "backend_service" }),
+        )
+        .await;
+    let body: serde_json::Value = resp.json().await.unwrap();
+    let id = body["data"]["_id"]["$oid"].as_str().unwrap().to_string();
+
+    // Attach a git repo.
+    let resp = server
+        .post(
+            &format!("/api/v1/targets/{id}/artifacts"),
+            &json!({ "kind": "git_repo", "source_ref": "https://git/svc.git" }),
+        )
+        .await;
+    assert_eq!(resp.status(), 200);
+    let body: serde_json::Value = resp.json().await.unwrap();
+    assert_eq!(body["data"]["artifacts"].as_array().unwrap().len(), 1);
+
+    // Delete it.
+    let resp = server.delete(&format!("/api/v1/targets/{id}")).await;
+    assert_eq!(resp.status(), 200);
+    let resp = server.get(&format!("/api/v1/targets/{id}")).await;
+    assert_eq!(resp.status(), 404);
+
+    server.cleanup().await;
+}

compliance-agent/tests/integration/api/repositories.rs

@@ -1,110 +0,0 @@
-use crate::common::TestServer;
-use serde_json::json;
-
-#[tokio::test]
-async fn add_and_list_repository() {
-    let server = TestServer::start().await;
-
-    // Initially empty
-    let resp = server.get("/api/v1/repositories").await;
-    assert_eq!(resp.status(), 200);
-    let body: serde_json::Value = resp.json().await.unwrap();
-    assert_eq!(body["data"].as_array().unwrap().len(), 0);
-
-    // Add a repository
-    let resp = server
-        .post(
-            "/api/v1/repositories",
-            &json!({
-                "name": "test-repo",
-                "git_url": "https://github.com/example/test-repo.git",
-            }),
-        )
-        .await;
-    assert_eq!(resp.status(), 200);
-    let body: serde_json::Value = resp.json().await.unwrap();
-    let repo_id = body["data"]["id"].as_str().unwrap().to_string();
-    assert!(!repo_id.is_empty());
-
-    // List should now return 1
-    let resp = server.get("/api/v1/repositories").await;
-    let body: serde_json::Value = resp.json().await.unwrap();
-    let repos = body["data"].as_array().unwrap();
-    assert_eq!(repos.len(), 1);
-    assert_eq!(repos[0]["name"], "test-repo");
-
-    server.cleanup().await;
-}
-
-#[tokio::test]
-async fn add_duplicate_repository_fails() {
-    let server = TestServer::start().await;
-
-    let payload = json!({
-        "name": "dup-repo",
-        "git_url": "https://github.com/example/dup-repo.git",
-    });
-
-    // First add succeeds
-    let resp = server.post("/api/v1/repositories", &payload).await;
-    assert_eq!(resp.status(), 200);
-
-    // Second add with same git_url should fail (unique index)
-    let resp = server.post("/api/v1/repositories", &payload).await;
-    assert_ne!(resp.status(), 200);
-
-    server.cleanup().await;
-}
-
-#[tokio::test]
-async fn delete_repository() {
-    let server = TestServer::start().await;
-
-    // Add a repo
-    let resp = server
-        .post(
-            "/api/v1/repositories",
-            &json!({
-                "name": "to-delete",
-                "git_url": "https://github.com/example/to-delete.git",
-            }),
-        )
-        .await;
-    let body: serde_json::Value = resp.json().await.unwrap();
-    let repo_id = body["data"]["id"].as_str().unwrap();
-
-    // Delete it
-    let resp = server
-        .delete(&format!("/api/v1/repositories/{repo_id}"))
-        .await;
-    assert_eq!(resp.status(), 200);
-
-    // List should be empty again
-    let resp = server.get("/api/v1/repositories").await;
-    let body: serde_json::Value = resp.json().await.unwrap();
-    assert_eq!(body["data"].as_array().unwrap().len(), 0);
-
-    server.cleanup().await;
-}
-
-#[tokio::test]
-async fn delete_nonexistent_repository_returns_404() {
-    let server = TestServer::start().await;
-
-    let resp = server
-        .delete("/api/v1/repositories/000000000000000000000000")
-        .await;
-    assert_eq!(resp.status(), 404);
-
-    server.cleanup().await;
-}
-
-#[tokio::test]
-async fn delete_invalid_id_returns_400() {
-    let server = TestServer::start().await;
-
-    let resp = server.delete("/api/v1/repositories/not-a-valid-id").await;
-    assert_eq!(resp.status(), 400);
-
-    server.cleanup().await;
-}

compliance-agent/tests/integration/api/stats.rs

@@ -5,13 +5,14 @@ use serde_json::json;
 async fn stats_overview_reflects_inserted_data() {
     let server = TestServer::start().await;
 
-    // Add a repo
+    // Add a target
     server
         .post(
-            "/api/v1/repositories",
+            "/api/v1/targets",
             &json!({
                 "name": "stats-repo",
-                "git_url": "https://github.com/example/stats-repo.git",
+                "target_type": "web_app",
+                "artifacts": [{ "kind": "git_repo", "source_ref": "https://github.com/example/stats-repo.git", "branch": "main" }],
             }),
         )
         .await;

compliance-agent/tests/tenant_isolation.rs

@@ -11,7 +11,7 @@
 #![allow(clippy::expect_used, clippy::unwrap_used)]
 
 use compliance_agent::database::DatabasePool;
-use compliance_core::models::TrackedRepository;
+use compliance_core::models::{Artifact, OnboardedTarget, TargetType};
 use compliance_core::{OrgRole, TenantContext, TenantStatus};
 use mongodb::bson::doc;
 
@@ -28,27 +28,12 @@ fn ctx(tenant_id: &str, slug: &str) -> TenantContext {
     }
 }
 
-fn fixture_repo(name: &str, git_url: &str) -> TrackedRepository {
+fn fixture_repo(name: &str, git_url: &str) -> OnboardedTarget {
-    TrackedRepository {
+    let mut target = OnboardedTarget::new(name.to_string(), TargetType::WebApp);
-        id: None,
+    target
-        name: name.to_string(),
+        .artifacts
-        git_url: git_url.to_string(),
+        .push(Artifact::git_repo(git_url.to_string(), "main".to_string()));
-        default_branch: "main".to_string(),
+    target
-        local_path: None,
-        scan_schedule: None,
-        webhook_enabled: false,
-        webhook_secret: None,
-        tracker_type: None,
-        tracker_owner: None,
-        tracker_repo: None,
-        tracker_token: None,
-        auth_token: None,
-        auth_username: None,
-        last_scanned_commit: None,
-        findings_count: 0,
-        created_at: chrono::Utc::now(),
-        updated_at: chrono::Utc::now(),
-    }
 }
 
 #[tokio::test]
@@ -71,12 +56,12 @@ async fn pool_isolates_tenants_at_driver_level() {
 
     // Write distinct repos into each tenant's database.
     acme_db
-        .repositories()
+        .onboarded_targets()
         .insert_one(fixture_repo("acme-app", "git@example.com:acme/app.git"))
         .await
         .expect("insert acme");
     globex_db
-        .repositories()
+        .onboarded_targets()
         .insert_one(fixture_repo(
             "globex-platform",
             "git@example.com:globex/platform.git",
@@ -173,12 +158,12 @@ async fn admin_helpers_list_and_drop_tenant_dbs() {
     let acme_db = pool.for_tenant(&acme).await.expect("acme db");
     let globex_db = pool.for_tenant(&globex).await.expect("globex db");
     acme_db
-        .repositories()
+        .onboarded_targets()
         .insert_one(fixture_repo("acme-app", "git@example.com:acme/app.git"))
         .await
         .expect("insert acme");
     globex_db
-        .repositories()
+        .onboarded_targets()
         .insert_one(fixture_repo("globex-app", "git@example.com:globex/app.git"))
         .await
         .expect("insert globex");
@@ -284,9 +269,9 @@ fn short_id() -> String {
 }
 
 /// Drain a `repositories` find cursor on the given tenant database.
-async fn collect(db: &compliance_agent::database::Database) -> Vec<TrackedRepository> {
+async fn collect(db: &compliance_agent::database::Database) -> Vec<OnboardedTarget> {
     let mut cursor = db
-        .repositories()
+        .onboarded_targets()
         .find(doc! {})
         .await
         .expect("find repositories");

compliance-core/src/models/mod.rs

@@ -44,6 +44,6 @@ pub use pentest::{
     PentestStatus, PentestStrategy, SeverityDistribution, TestUserRecord, TesterInfo,
     ToolCallRecord,
 };
-pub use repository::{ScanTrigger, TrackedRepository};
+pub use repository::ScanTrigger;
 pub use sbom::{SbomEntry, VulnRef};
 pub use scan::{ScanPhase, ScanRun, ScanRunStatus, ScanType};

compliance-core/src/models/repository.rs

@@ -1,8 +1,6 @@
-use chrono::{DateTime, Utc};
+use serde::{Deserialize, Serialize};
-use serde::{Deserialize, Deserializer, Serialize};
-
-use super::issue::TrackerType;
 
+/// What initiated a scan.
 #[derive(Debug, Clone, Serialize, Deserialize, PartialEq, Eq)]
 #[serde(rename_all = "snake_case")]
 pub enum ScanTrigger {
@@ -10,92 +8,3 @@ pub enum ScanTrigger {
     Webhook,
     Manual,
 }
-
-#[derive(Debug, Clone, Serialize, Deserialize)]
-pub struct TrackedRepository {
-    #[serde(rename = "_id", skip_serializing_if = "Option::is_none")]
-    pub id: Option<bson::oid::ObjectId>,
-    #[serde(default)]
-    pub name: String,
-    #[serde(default)]
-    pub git_url: String,
-    #[serde(default = "default_branch")]
-    pub default_branch: String,
-    pub local_path: Option<String>,
-    pub scan_schedule: Option<String>,
-    #[serde(default)]
-    pub webhook_enabled: bool,
-    /// Auto-generated HMAC secret for verifying incoming webhooks
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub webhook_secret: Option<String>,
-    pub tracker_type: Option<TrackerType>,
-    pub tracker_owner: Option<String>,
-    pub tracker_repo: Option<String>,
-    /// Optional per-repo PAT for the issue tracker (GitHub/GitLab/Jira)
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub tracker_token: Option<String>,
-    /// Optional auth token for HTTPS private repos (PAT or password)
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub auth_token: Option<String>,
-    /// Optional username for HTTPS auth (defaults to "x-access-token" for PATs)
-    #[serde(default, skip_serializing_if = "Option::is_none")]
-    pub auth_username: Option<String>,
-    pub last_scanned_commit: Option<String>,
-    #[serde(default, deserialize_with = "deserialize_findings_count")]
-    pub findings_count: u32,
-    #[serde(
-        default = "chrono::Utc::now",
-        with = "super::serde_helpers::bson_datetime"
-    )]
-    pub created_at: DateTime<Utc>,
-    #[serde(
-        default = "chrono::Utc::now",
-        with = "super::serde_helpers::bson_datetime"
-    )]
-    pub updated_at: DateTime<Utc>,
-}
-
-fn default_branch() -> String {
-    "main".to_string()
-}
-
-fn deserialize_findings_count<'de, D>(deserializer: D) -> Result<u32, D::Error>
-where
-    D: Deserializer<'de>,
-{
-    let bson = bson::Bson::deserialize(deserializer)?;
-    match &bson {
-        bson::Bson::Int32(n) => Ok(*n as u32),
-        bson::Bson::Int64(n) => Ok(*n as u32),
-        bson::Bson::Double(n) => Ok(*n as u32),
-        _ => Ok(0),
-    }
-}
-
-impl TrackedRepository {
-    pub fn new(name: String, git_url: String) -> Self {
-        let now = Utc::now();
-        // Generate a random webhook secret (hex-encoded UUID v4, no dashes)
-        let webhook_secret = uuid::Uuid::new_v4().to_string().replace('-', "");
-        Self {
-            id: None,
-            name,
-            git_url,
-            default_branch: "main".to_string(),
-            local_path: None,
-            scan_schedule: None,
-            auth_token: None,
-            auth_username: None,
-            webhook_enabled: false,
-            webhook_secret: Some(webhook_secret),
-            tracker_type: None,
-            tracker_owner: None,
-            tracker_repo: None,
-            tracker_token: None,
-            last_scanned_commit: None,
-            findings_count: 0,
-            created_at: now,
-            updated_at: now,
-        }
-    }
-}

compliance-dashboard/src/app.rs

@@ -10,8 +10,10 @@ pub enum Route {
     #[layout(AppShell)]
         #[route("/")]
         OverviewPage {},
-        #[route("/repositories")]
+        #[route("/targets")]
-        RepositoriesPage {},
+        TargetsPage {},
+        #[route("/onboard")]
+        OnboardingPage {},
         #[route("/findings")]
         FindingsPage {},
         #[route("/findings/:id")]

compliance-dashboard/src/components/pentest_wizard.rs

@@ -4,8 +4,9 @@ use dioxus_free_icons::Icon;
 
 use crate::app::Route;
 use crate::infrastructure::dast::fetch_dast_targets;
+use crate::infrastructure::onboarding::fetch_targets;
 use crate::infrastructure::pentest::{create_pentest_session_wizard, lookup_repo_by_url};
-use crate::infrastructure::repositories::{fetch_repositories, fetch_ssh_public_key};
+use crate::infrastructure::repositories::fetch_ssh_public_key;
 
 const DISCLAIMER_TEXT: &str = "I confirm that I have authorization to perform security testing \
 against the specified target. I understand that penetration testing may cause disruption to the \
@@ -39,7 +40,7 @@ pub fn PentestWizard(show: Signal<bool>) -> Element {
     let mut show_target_dropdown = use_signal(|| false);
     let mut show_repo_dropdown = use_signal(|| false);
     let existing_targets = use_resource(|| async { fetch_dast_targets().await.ok() });
-    let existing_repos = use_resource(|| async { fetch_repositories(1).await.ok() });
+    let existing_repos = use_resource(|| async { fetch_targets().await.ok() });
 
     // SSH key state for private repos
     let mut ssh_public_key = use_signal(String::new);
@@ -211,7 +212,25 @@ pub fn PentestWizard(show: Signal<bool>) -> Element {
             Some(Some(data)) => data
                 .data
                 .iter()
-                .map(|r| (r.git_url.clone(), r.name.clone()))
+                .filter_map(|t| {
+                    let name = t
+                        .get("name")
+                        .and_then(|v| v.as_str())
+                        .unwrap_or_default()
+                        .to_string();
+                    let git_url = t
+                        .get("artifacts")
+                        .and_then(|a| a.as_array())
+                        .and_then(|arr| {
+                            arr.iter().find(|a| {
+                                a.get("kind").and_then(|k| k.as_str()) == Some("git_repo")
+                            })
+                        })
+                        .and_then(|a| a.get("source_ref"))
+                        .and_then(|s| s.as_str())?
+                        .to_string();
+                    Some((git_url, name))
+                })
                 .collect(),
             _ => Vec::new(),
         }

compliance-dashboard/src/components/sidebar.rs

@@ -24,10 +24,15 @@ pub fn Sidebar() -> Element {
             icon: rsx! { Icon { icon: BsSpeedometer2, width: 18, height: 18 } },
         },
         NavItem {
-            label: "Repositories",
+            label: "Targets",
-            route: Route::RepositoriesPage {},
+            route: Route::TargetsPage {},
             icon: rsx! { Icon { icon: BsFolder2Open, width: 18, height: 18 } },
         },
+        NavItem {
+            label: "Onboard",
+            route: Route::OnboardingPage {},
+            icon: rsx! { Icon { icon: BsPlusCircle, width: 18, height: 18 } },
+        },
         NavItem {
             label: "Findings",
             route: Route::FindingsPage {},

compliance-dashboard/src/infrastructure/database.rs

@@ -19,10 +19,6 @@ impl Database {
         Ok(Self { inner: db })
     }
 
-    pub fn repositories(&self) -> Collection<TrackedRepository> {
-        self.inner.collection("repositories")
-    }
-
     pub fn findings(&self) -> Collection<Finding> {
         self.inner.collection("findings")
     }

compliance-dashboard/src/infrastructure/mod.rs

@@ -10,6 +10,7 @@ pub mod issues;
 pub mod mcp;
 pub mod mcp_tokens;
 pub mod notifications;
+pub mod onboarding;
 pub mod pentest;
 #[allow(clippy::too_many_arguments)]
 pub mod repositories;

compliance-dashboard/src/infrastructure/onboarding.rs

@@ -0,0 +1,227 @@
+//! Server functions for the onboarding wizard — proxy to the agent's
+//! `/api/v1/targets` endpoints.
+
+use dioxus::prelude::*;
+use serde::{Deserialize, Serialize};
+
+/// One artifact the wizard collects for a target.
+#[derive(Debug, Clone, Serialize, Deserialize, Default, PartialEq)]
+pub struct ArtifactInputDto {
+    pub kind: String,
+    pub source_ref: String,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub branch: Option<String>,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub plc_format: Option<String>,
+}
+
+#[derive(Debug, Clone, Serialize, Deserialize, Default)]
+pub struct TargetsResponse {
+    pub data: Vec<serde_json::Value>,
+    pub total: Option<u64>,
+}
+
+#[derive(Debug, Clone, Serialize, Deserialize, Default)]
+pub struct TargetResponse {
+    pub data: serde_json::Value,
+}
+
+#[derive(Debug, Clone, Serialize, Deserialize, Default)]
+pub struct ApplicableScansData {
+    #[serde(default)]
+    pub scans: Vec<serde_json::Value>,
+    #[serde(default)]
+    pub pentest_supported: bool,
+}
+
+#[derive(Debug, Clone, Serialize, Deserialize, Default)]
+pub struct ApplicableScansResponse {
+    pub data: ApplicableScansData,
+}
+
+/// Validate a target name. The name is used as the clone directory downstream,
+/// so it must be a single safe segment (no slashes) and free of stray spaces.
+pub fn validate_target_name(name: &str) -> Option<String> {
+    let n = name.trim();
+    if n.is_empty() {
+        return Some("Enter a name".to_string());
+    }
+    if name != n {
+        return Some("Remove the leading/trailing spaces".to_string());
+    }
+    if n.contains('/') || n.contains('\\') {
+        return Some("No slashes — the name becomes a folder (e.g. stm32f411-blinky)".to_string());
+    }
+    None
+}
+
+/// Client-side validation of an artifact reference for its kind. Returns an
+/// error message when the value is obviously wrong for its category, so the
+/// wizard / editor can flag it up front instead of the scan discovering it.
+pub fn validate_artifact_ref(kind: &str, source_ref: &str) -> Option<String> {
+    let s = source_ref;
+    if s.trim().is_empty() {
+        return Some("Cannot be empty".to_string());
+    }
+    if s != s.trim() {
+        return Some("Remove the leading/trailing spaces".to_string());
+    }
+    let no_space = !s.contains(char::is_whitespace);
+    match kind {
+        "git_repo" => {
+            let looks_git = s.starts_with("https://")
+                || s.starts_with("http://")
+                || s.starts_with("ssh://")
+                || s.starts_with("git://")
+                || (s.contains('@') && s.contains(':'));
+            (!(looks_git && no_space))
+                .then(|| "Enter a git URL — https://…, ssh://…, or git@host:path".to_string())
+        }
+        "live_url" => {
+            let ok = (s.starts_with("https://") || s.starts_with("http://")) && no_space;
+            (!ok).then(|| "Enter an http(s) URL, e.g. https://app.example.com".to_string())
+        }
+        "container_image" => {
+            (!no_space).then(|| "Enter an image ref, e.g. registry/name:tag".to_string())
+        }
+        "source_archive" | "firmware_image" | "mobile_package" | "plc_project" => {
+            (!no_space).then(|| "Enter a path or URL (no spaces)".to_string())
+        }
+        // plaintext_description (and anything unknown): accept free-form text.
+        _ => None,
+    }
+}
+
+/// List onboarded targets.
+#[server]
+pub async fn fetch_targets() -> Result<TargetsResponse, ServerFnError> {
+    let resp = super::agent_client::agent_get("/api/v1/targets")
+        .await?
+        .send()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))?;
+    resp.json()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))
+}
+
+/// Create a target with the collected artifacts.
+#[server]
+pub async fn create_target(
+    name: String,
+    target_type: String,
+    description: Option<String>,
+    artifacts: Vec<ArtifactInputDto>,
+) -> Result<TargetResponse, ServerFnError> {
+    let body = serde_json::json!({
+        "name": name,
+        "target_type": target_type,
+        "description": description,
+        "artifacts": artifacts,
+    });
+    let resp = super::agent_client::agent_request(reqwest::Method::POST, "/api/v1/targets")
+        .await?
+        .json(&body)
+        .send()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))?;
+    resp.json()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))
+}
+
+/// Update a target's name / type / artifacts (dashboard editor).
+#[server]
+pub async fn update_target(
+    id: String,
+    name: Option<String>,
+    target_type: Option<String>,
+    artifacts: Option<Vec<ArtifactInputDto>>,
+) -> Result<TargetResponse, ServerFnError> {
+    let mut body = serde_json::Map::new();
+    if let Some(n) = name {
+        body.insert("name".to_string(), serde_json::json!(n));
+    }
+    if let Some(t) = target_type {
+        body.insert("target_type".to_string(), serde_json::json!(t));
+    }
+    if let Some(a) = artifacts {
+        body.insert(
+            "artifacts".to_string(),
+            serde_json::to_value(a).map_err(|e| ServerFnError::new(e.to_string()))?,
+        );
+    }
+    let resp = super::agent_client::agent_request(
+        reqwest::Method::PATCH,
+        &format!("/api/v1/targets/{id}"),
+    )
+    .await?
+    .json(&serde_json::Value::Object(body))
+    .send()
+    .await
+    .map_err(|e| ServerFnError::new(e.to_string()))?;
+    resp.json()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))
+}
+
+/// Run kind-based classification on a target.
+#[server]
+pub async fn detect_target(id: String) -> Result<TargetResponse, ServerFnError> {
+    let resp = super::agent_client::agent_request(
+        reqwest::Method::POST,
+        &format!("/api/v1/targets/{id}/detect"),
+    )
+    .await?
+    .send()
+    .await
+    .map_err(|e| ServerFnError::new(e.to_string()))?;
+    resp.json()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))
+}
+
+/// Fetch the scan-applicability matrix for a target.
+#[server]
+pub async fn fetch_applicable_scans(id: String) -> Result<ApplicableScansResponse, ServerFnError> {
+    let resp = super::agent_client::agent_get(&format!("/api/v1/targets/{id}/applicable-scans"))
+        .await?
+        .send()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))?;
+    resp.json()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))
+}
+
+/// Delete a target (and cascade its findings / SBOM / scan runs / CVE alerts).
+#[server]
+pub async fn delete_target(id: String) -> Result<serde_json::Value, ServerFnError> {
+    let resp = super::agent_client::agent_request(
+        reqwest::Method::DELETE,
+        &format!("/api/v1/targets/{id}"),
+    )
+    .await?
+    .send()
+    .await
+    .map_err(|e| ServerFnError::new(e.to_string()))?;
+    resp.json()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))
+}
+
+/// Trigger a scan for a target.
+#[server]
+pub async fn trigger_target_scan(id: String) -> Result<serde_json::Value, ServerFnError> {
+    let resp = super::agent_client::agent_request(
+        reqwest::Method::POST,
+        &format!("/api/v1/targets/{id}/scan"),
+    )
+    .await?
+    .send()
+    .await
+    .map_err(|e| ServerFnError::new(e.to_string()))?;
+    resp.json()
+        .await
+        .map_err(|e| ServerFnError::new(e.to_string()))
+}

compliance-dashboard/src/infrastructure/repositories.rs

@@ -1,145 +1,10 @@
+//! The agent's SSH deploy public key — shown so a read-only deploy key can be
+//! added to private git targets. (The legacy repositories CRUD moved to the
+//! unified onboarding/targets API.)
+
 use dioxus::prelude::*;
-use serde::{Deserialize, Serialize};
-
-use compliance_core::models::TrackedRepository;
-
-#[derive(Debug, Clone, Serialize, Deserialize, Default)]
-pub struct RepositoryListResponse {
-    pub data: Vec<TrackedRepository>,
-    pub total: Option<u64>,
-    pub page: Option<u64>,
-}
-
-#[server]
-pub async fn fetch_repositories(page: u64) -> Result<RepositoryListResponse, ServerFnError> {
-    let path = format!("/api/v1/repositories?page={page}&limit=20");
-    let resp = super::agent_client::agent_get(&path)
-        .await?
-        .send()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))?;
-    let body: RepositoryListResponse = resp
-        .json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))?;
-    Ok(body)
-}
-
-#[server]
-pub async fn add_repository(
-    name: String,
-    git_url: String,
-    default_branch: String,
-    auth_token: Option<String>,
-    auth_username: Option<String>,
-    tracker_type: Option<String>,
-    tracker_owner: Option<String>,
-    tracker_repo: Option<String>,
-    tracker_token: Option<String>,
-) -> Result<(), ServerFnError> {
-    let mut body = serde_json::json!({
-        "name": name,
-        "git_url": git_url,
-        "default_branch": default_branch,
-    });
-    if let Some(token) = auth_token.filter(|t| !t.is_empty()) {
-        body["auth_token"] = serde_json::Value::String(token);
-    }
-    if let Some(username) = auth_username.filter(|u| !u.is_empty()) {
-        body["auth_username"] = serde_json::Value::String(username);
-    }
-    if let Some(tt) = tracker_type.filter(|t| !t.is_empty()) {
-        body["tracker_type"] = serde_json::Value::String(tt);
-    }
-    if let Some(to) = tracker_owner.filter(|t| !t.is_empty()) {
-        body["tracker_owner"] = serde_json::Value::String(to);
-    }
-    if let Some(tr) = tracker_repo.filter(|t| !t.is_empty()) {
-        body["tracker_repo"] = serde_json::Value::String(tr);
-    }
-    if let Some(tk) = tracker_token.filter(|t| !t.is_empty()) {
-        body["tracker_token"] = serde_json::Value::String(tk);
-    }
-
-    let resp = super::agent_client::agent_request(reqwest::Method::POST, "/api/v1/repositories")
-        .await?
-        .json(&body)
-        .send()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))?;
-
-    if !resp.status().is_success() {
-        let body = resp.text().await.unwrap_or_default();
-        return Err(ServerFnError::new(format!(
-            "Failed to add repository: {body}"
-        )));
-    }
-
-    Ok(())
-}
-
-#[server]
-pub async fn update_repository(
-    repo_id: String,
-    name: Option<String>,
-    default_branch: Option<String>,
-    auth_token: Option<String>,
-    auth_username: Option<String>,
-    tracker_type: Option<String>,
-    tracker_owner: Option<String>,
-    tracker_repo: Option<String>,
-    tracker_token: Option<String>,
-    scan_schedule: Option<String>,
-) -> Result<(), ServerFnError> {
-    let mut body = serde_json::Map::new();
-    if let Some(v) = name.filter(|s| !s.is_empty()) {
-        body.insert("name".into(), serde_json::Value::String(v));
-    }
-    if let Some(v) = default_branch.filter(|s| !s.is_empty()) {
-        body.insert("default_branch".into(), serde_json::Value::String(v));
-    }
-    if let Some(v) = auth_token {
-        body.insert("auth_token".into(), serde_json::Value::String(v));
-    }
-    if let Some(v) = auth_username {
-        body.insert("auth_username".into(), serde_json::Value::String(v));
-    }
-    if let Some(v) = tracker_type {
-        body.insert("tracker_type".into(), serde_json::Value::String(v));
-    }
-    if let Some(v) = tracker_owner {
-        body.insert("tracker_owner".into(), serde_json::Value::String(v));
-    }
-    if let Some(v) = tracker_repo {
-        body.insert("tracker_repo".into(), serde_json::Value::String(v));
-    }
-    if let Some(v) = tracker_token {
-        body.insert("tracker_token".into(), serde_json::Value::String(v));
-    }
-    if let Some(v) = scan_schedule {
-        body.insert("scan_schedule".into(), serde_json::Value::String(v));
-    }
-
-    let resp = super::agent_client::agent_request(
-        reqwest::Method::PATCH,
-        &format!("/api/v1/repositories/{repo_id}"),
-    )
-    .await?
-    .json(&body)
-    .send()
-    .await
-    .map_err(|e| ServerFnError::new(e.to_string()))?;
-
-    if !resp.status().is_success() {
-        let text = resp.text().await.unwrap_or_default();
-        return Err(ServerFnError::new(format!(
-            "Failed to update repository: {text}"
-        )));
-    }
-
-    Ok(())
-}
 
+/// Fetch the agent's SSH deploy public key.
 #[server]
 pub async fn fetch_ssh_public_key() -> Result<String, ServerFnError> {
     let resp = super::agent_client::agent_get("/api/v1/settings/ssh-public-key")
@@ -163,86 +28,3 @@ pub async fn fetch_ssh_public_key() -> Result<String, ServerFnError> {
         .unwrap_or("")
         .to_string())
 }
-
-#[server]
-pub async fn delete_repository(repo_id: String) -> Result<(), ServerFnError> {
-    let resp = super::agent_client::agent_request(
-        reqwest::Method::DELETE,
-        &format!("/api/v1/repositories/{repo_id}"),
-    )
-    .await?
-    .send()
-    .await
-    .map_err(|e| ServerFnError::new(e.to_string()))?;
-
-    if !resp.status().is_success() {
-        let body = resp.text().await.unwrap_or_default();
-        return Err(ServerFnError::new(format!(
-            "Failed to delete repository: {body}"
-        )));
-    }
-
-    Ok(())
-}
-
-#[server]
-pub async fn trigger_repo_scan(repo_id: String) -> Result<(), ServerFnError> {
-    super::agent_client::agent_request(
-        reqwest::Method::POST,
-        &format!("/api/v1/repositories/{repo_id}/scan"),
-    )
-    .await?
-    .send()
-    .await
-    .map_err(|e| ServerFnError::new(e.to_string()))?;
-
-    Ok(())
-}
-
-#[derive(Debug, Clone, Serialize, Deserialize, Default)]
-pub struct WebhookConfigResponse {
-    pub webhook_secret: Option<String>,
-    pub tracker_type: String,
-}
-
-#[server]
-pub async fn fetch_webhook_config(repo_id: String) -> Result<WebhookConfigResponse, ServerFnError> {
-    let resp =
-        super::agent_client::agent_get(&format!("/api/v1/repositories/{repo_id}/webhook-config"))
-            .await?
-            .send()
-            .await
-            .map_err(|e| ServerFnError::new(e.to_string()))?;
-    let body: WebhookConfigResponse = resp
-        .json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))?;
-    Ok(body)
-}
-
-/// Check if a repository has any running scans
-#[server]
-pub async fn check_repo_scanning(repo_id: String) -> Result<bool, ServerFnError> {
-    let resp = super::agent_client::agent_get("/api/v1/scan-runs?page=1&limit=1")
-        .await?
-        .send()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))?;
-    let body: serde_json::Value = resp
-        .json()
-        .await
-        .map_err(|e| ServerFnError::new(e.to_string()))?;
-
-    // Check if the most recent scan for this repo is still running
-    if let Some(scans) = body.get("data").and_then(|d| d.as_array()) {
-        for scan in scans {
-            let scan_repo = scan.get("repo_id").and_then(|v| v.as_str()).unwrap_or("");
-            let status = scan.get("status").and_then(|v| v.as_str()).unwrap_or("");
-            if scan_repo == repo_id && status == "running" {
-                return Ok(true);
-            }
-        }
-    }
-
-    Ok(false)
-}

compliance-dashboard/src/pages/chat_index.rs

@@ -2,11 +2,11 @@ use dioxus::prelude::*;
 
 use crate::app::Route;
 use crate::components::page_header::PageHeader;
-use crate::infrastructure::repositories::fetch_repositories;
+use crate::infrastructure::onboarding::fetch_targets;
 
 #[component]
 pub fn ChatIndexPage() -> Element {
-    let repos = use_resource(|| async { fetch_repositories(1).await.ok() });
+    let repos = use_resource(|| async { fetch_targets().await.ok() });
 
     rsx! {
         PageHeader {
@@ -28,10 +28,32 @@ pub fn ChatIndexPage() -> Element {
                         div { class: "graph-index-grid",
                             for repo in repo_list {
                                 {
-                                    let repo_id = repo.id.map(|id| id.to_hex()).unwrap_or_default();
+                                    let repo_id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                    let name = repo.name.clone();
+                                    let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
-                                    let url = repo.git_url.clone();
+                                    let url = repo
-                                    let branch = repo.default_branch.clone();
+                                        .get("artifacts")
+                                        .and_then(|a| a.as_array())
+                                        .and_then(|arr| {
+                                            arr.iter().find(|a| {
+                                                a.get("kind").and_then(|k| k.as_str()) == Some("git_repo")
+                                            })
+                                        })
+                                        .and_then(|a| a.get("source_ref"))
+                                        .and_then(|s| s.as_str())
+                                        .unwrap_or_default()
+                                        .to_string();
+                                    let branch = repo
+                                        .get("artifacts")
+                                        .and_then(|a| a.as_array())
+                                        .and_then(|arr| {
+                                            arr.iter().find_map(|a| {
+                                                a.get("git")
+                                                    .and_then(|g| g.get("default_branch"))
+                                                    .and_then(|b| b.as_str())
+                                            })
+                                        })
+                                        .unwrap_or("main")
+                                        .to_string();
                                     rsx! {
                                         Link {
                                             to: Route::ChatPage { repo_id },

compliance-dashboard/src/pages/findings.rs

@@ -20,7 +20,7 @@ pub fn FindingsPage() -> Element {
     let mut selected_ids = use_signal(Vec::<String>::new);
 
     let repos = use_resource(|| async {
-        crate::infrastructure::repositories::fetch_repositories(1)
+        crate::infrastructure::onboarding::fetch_targets()
             .await
             .ok()
     });
@@ -86,14 +86,14 @@ pub fn FindingsPage() -> Element {
             }
             select {
                 onchange: move |e| { repo_filter.set(e.value()); page.set(1); },
-                option { value: "", "All Repositories" }
+                option { value: "", "All Targets" }
                 {
                     match &*repos.read() {
                         Some(Some(resp)) => rsx! {
-                            for repo in &resp.data {
+                            for t in &resp.data {
                                 {
-                                    let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
+                                    let id = t.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                    let name = repo.name.clone();
+                                    let name = t.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
                                     rsx! {
                                         option { value: "{id}", "{name}" }
                                     }

compliance-dashboard/src/pages/graph_index.rs

@@ -2,11 +2,11 @@ use dioxus::prelude::*;
 
 use crate::app::Route;
 use crate::components::page_header::PageHeader;
-use crate::infrastructure::repositories::fetch_repositories;
+use crate::infrastructure::onboarding::fetch_targets;
 
 #[component]
 pub fn GraphIndexPage() -> Element {
-    let repos = use_resource(|| async { fetch_repositories(1).await.ok() });
+    let repos = use_resource(|| async { fetch_targets().await.ok() });
 
     rsx! {
         PageHeader {
@@ -28,27 +28,34 @@ pub fn GraphIndexPage() -> Element {
                         div { class: "graph-index-grid",
                             for repo in repo_list {
                                 {
-                                    let repo_id = repo.id.map(|id| id.to_hex()).unwrap_or_default();
+                                    let repo_id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                    let name = repo.name.clone();
+                                    let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
-                                    let url = repo.git_url.clone();
+                                    let url = repo
-                                    let branch = repo.default_branch.clone();
+                                        .get("artifacts")
-                                    let findings = repo.findings_count;
+                                        .and_then(|a| a.as_array())
+                                        .and_then(|arr| {
+                                            arr.iter().find(|a| {
+                                                a.get("kind").and_then(|k| k.as_str()) == Some("git_repo")
+                                            })
+                                        })
+                                        .and_then(|a| a.get("source_ref"))
+                                        .and_then(|s| s.as_str())
+                                        .unwrap_or_default()
+                                        .to_string();
+                                    let branch = repo
+                                        .get("artifacts")
+                                        .and_then(|a| a.as_array())
+                                        .and_then(|arr| {
+                                            arr.iter().find_map(|a| {
+                                                a.get("git")
+                                                    .and_then(|g| g.get("default_branch"))
+                                                    .and_then(|b| b.as_str())
+                                            })
+                                        })
+                                        .unwrap_or("main")
+                                        .to_string();
+                                    let findings = repo.get("findings_count").and_then(|n| n.as_u64()).unwrap_or(0);
                                     let findings_label = if findings != 1 { format!("{findings} findings") } else { "1 finding".to_string() };
-                                    let updated = {
-                                        let now = chrono::Utc::now();
-                                        let diff = now.signed_duration_since(repo.updated_at);
-                                        if diff.num_minutes() < 1 {
-                                            "just now".to_string()
-                                        } else if diff.num_hours() < 1 {
-                                            format!("{}m ago", diff.num_minutes())
-                                        } else if diff.num_days() < 1 {
-                                            format!("{}h ago", diff.num_hours())
-                                        } else if diff.num_days() < 30 {
-                                            format!("{}d ago", diff.num_days())
-                                        } else {
-                                            repo.updated_at.format("%Y-%m-%d").to_string()
-                                        }
-                                    };
                                     rsx! {
                                         Link {
                                             to: Route::GraphExplorerPage { repo_id },
@@ -67,9 +74,6 @@ pub fn GraphIndexPage() -> Element {
                                                 span { class: "graph-repo-card-tag graph-repo-card-tag-findings",
                                                     "{findings_label}"
                                                 }
-                                                span { class: "graph-repo-card-tag",
-                                                    "Updated {updated}"
-                                                }
                                             }
                                         }
                                     }

compliance-dashboard/src/pages/mod.rs

@@ -12,11 +12,12 @@ pub mod impact_analysis;
 pub mod issues;
 pub mod mcp_servers;
 pub mod mcp_tokens;
+pub mod onboarding;
 pub mod overview;
 pub mod pentest_dashboard;
 pub mod pentest_session;
-pub mod repositories;
 pub mod sbom;
+pub mod targets;
 
 pub use chat::ChatPage;
 pub use chat_index::ChatIndexPage;
@@ -32,8 +33,9 @@ pub use impact_analysis::ImpactAnalysisPage;
 pub use issues::IssuesPage;
 pub use mcp_servers::McpServersPage;
 pub use mcp_tokens::McpTokensPage;
+pub use onboarding::OnboardingPage;
 pub use overview::OverviewPage;
 pub use pentest_dashboard::PentestDashboardPage;
 pub use pentest_session::PentestSessionPage;
-pub use repositories::RepositoriesPage;
 pub use sbom::SbomPage;
+pub use targets::TargetsPage;

compliance-dashboard/src/pages/onboarding.rs

@@ -0,0 +1,421 @@
+use dioxus::prelude::*;
+
+use crate::components::page_header::PageHeader;
+use crate::infrastructure::onboarding::{
+    create_target, detect_target, fetch_applicable_scans, trigger_target_scan,
+    validate_artifact_ref, validate_target_name, ArtifactInputDto,
+};
+
+/// (value, label, one-line description) for the 9 target families.
+const TARGET_TYPES: &[(&str, &str, &str)] = &[
+    ("web_app", "Web Application", "Front end + server"),
+    ("backend_service", "Backend / API", "REST, GraphQL, gRPC"),
+    ("desktop_app", "Desktop App", "Windows / macOS / Linux"),
+    ("android_app", "Android App", "APK / AAB"),
+    ("ios_app", "iOS App", "IPA"),
+    (
+        "firmware_bare_metal",
+        "Firmware — bare metal",
+        "No operating system",
+    ),
+    ("firmware_rtos", "Firmware — RTOS", "Zephyr, FreeRTOS, ..."),
+    (
+        "embedded_linux_yocto",
+        "Embedded Linux / Yocto",
+        "BSP + image",
+    ),
+    ("plc_sps", "PLC / SPS", "IEC 61131-3"),
+];
+
+/// (value, label) for the artifact kinds a user can attach.
+const ARTIFACT_KINDS: &[(&str, &str)] = &[
+    ("git_repo", "Git repository"),
+    ("source_archive", "Source archive (zip)"),
+    ("firmware_image", "Firmware image"),
+    ("mobile_package", "Mobile package (APK/IPA)"),
+    ("container_image", "Container image"),
+    ("live_url", "Live URL"),
+    ("plc_project", "PLC project"),
+    ("plaintext_description", "Description (text)"),
+];
+
+const STEP_LABELS: &[&str] = &["Target type", "Artifacts", "Review", "Done"];
+
+/// One row in the applicable-scans list on the success step.
+#[component]
+fn ScanRow(scan: serde_json::Value) -> Element {
+    let name = scan
+        .get("scan")
+        .and_then(|v| v.as_str())
+        .unwrap_or("?")
+        .to_string();
+    let rationale = scan
+        .get("rationale")
+        .and_then(|v| v.as_str())
+        .unwrap_or("")
+        .to_string();
+    let blocked = scan
+        .get("blocked_reason")
+        .and_then(|v| v.as_str())
+        .map(String::from);
+    let default_on = scan
+        .get("default_on")
+        .and_then(|v| v.as_bool())
+        .unwrap_or(false);
+    let badge_class = if blocked.is_some() {
+        "badge badge-info"
+    } else if default_on {
+        "badge badge-success"
+    } else {
+        "badge"
+    };
+    rsx! {
+        div { style: "display: flex; gap: 8px; align-items: center; padding: 6px 0;",
+            span { class: "{badge_class}", "{name}" }
+            span { style: "opacity: 0.8;", "{rationale}" }
+            if let Some(b) = blocked {
+                span { style: "opacity: 0.6; font-style: italic;", "— {b}" }
+            }
+        }
+    }
+}
+
+fn kind_label(kind: &str) -> &str {
+    ARTIFACT_KINDS
+        .iter()
+        .find(|(v, _)| *v == kind)
+        .map(|(_, l)| *l)
+        .unwrap_or(kind)
+}
+
+fn type_label(value: &str) -> &str {
+    TARGET_TYPES
+        .iter()
+        .find(|(v, _, _)| *v == value)
+        .map(|(_, l, _)| *l)
+        .unwrap_or(value)
+}
+
+#[component]
+pub fn OnboardingPage() -> Element {
+    let mut step = use_signal(|| 0usize);
+    let mut name = use_signal(String::new);
+    let mut target_type = use_signal(String::new);
+    let mut description = use_signal(String::new);
+    let mut artifacts = use_signal(Vec::<ArtifactInputDto>::new);
+
+    // "Add artifact" mini-form.
+    let mut new_kind = use_signal(|| "git_repo".to_string());
+    let mut new_source = use_signal(String::new);
+    let mut new_branch = use_signal(|| "main".to_string());
+
+    // Create + result state.
+    let mut creating = use_signal(|| false);
+    let mut error = use_signal(|| Option::<String>::None);
+    let mut scans = use_signal(Vec::<serde_json::Value>::new);
+    let mut suggested = use_signal(|| Option::<String>::None);
+    let mut created_id = use_signal(|| Option::<String>::None);
+    let mut scan_msg = use_signal(|| Option::<String>::None);
+
+    let step_now = step();
+    let name_error = validate_target_name(&name());
+    let can_advance_type = name_error.is_none() && !target_type().trim().is_empty();
+    let has_artifacts = !artifacts().is_empty();
+    // Live validation of the artifact reference being typed (empty = no error yet).
+    let new_source_error = if new_source().is_empty() {
+        None
+    } else {
+        validate_artifact_ref(&new_kind(), &new_source())
+    };
+
+    rsx! {
+        PageHeader {
+            title: "Onboard a target",
+            description: "Add a target, attach its artifacts, and see which scans apply.",
+        }
+
+        // Stepper.
+        div { class: "wizard-steps",
+            for (i, label) in STEP_LABELS.iter().enumerate() {
+                div {
+                    class: if i == step_now { "wizard-step wizard-step-active" } else { "wizard-step" },
+                    span { class: "wizard-step-dot", "{i + 1}" }
+                    span { class: "wizard-step-label", "{label}" }
+                }
+            }
+        }
+
+        if let Some(err) = error() {
+            div { class: "card", style: "border-color: var(--danger, #d33); margin-bottom: 12px;",
+                div { class: "card-header", "Error" }
+                div { style: "padding: 12px;", "{err}" }
+            }
+        }
+
+        div { class: "card",
+            // ---- Step 0: target type + name ----
+            if step_now == 0 {
+                div { class: "card-header", "What kind of software is this?" }
+                div { style: "padding: 16px;",
+                    div { class: "form-group",
+                        label { "Name" }
+                        input {
+                            r#type: "text",
+                            placeholder: "acme-web",
+                            value: "{name}",
+                            oninput: move |e| name.set(e.value()),
+                        }
+                        if !name().is_empty() {
+                            if let Some(err) = name_error.clone() {
+                                div { style: "color: var(--danger, #d33); font-size: 0.85em; margin-top: 4px;", "{err}" }
+                            }
+                        }
+                    }
+                    div {
+                        style: "display: grid; grid-template-columns: repeat(auto-fill, minmax(200px, 1fr)); gap: 12px; margin-top: 12px;",
+                        for (value, tlabel, tdesc) in TARGET_TYPES.iter().copied() {
+                            div {
+                                class: "card",
+                                style: if target_type() == value {
+                                    "padding: 12px; cursor: pointer; border: 2px solid var(--accent, #3b82f6);"
+                                } else {
+                                    "padding: 12px; cursor: pointer;"
+                                },
+                                onclick: move |_| target_type.set(value.to_string()),
+                                div { style: "font-weight: 600;", "{tlabel}" }
+                                div { style: "font-size: 0.85em; opacity: 0.7;", "{tdesc}" }
+                            }
+                        }
+                    }
+                }
+            }
+
+            // ---- Step 1: artifacts ----
+            if step_now == 1 {
+                div { class: "card-header", "Attach artifacts" }
+                div { style: "padding: 16px;",
+                    div { style: "display: flex; gap: 8px; flex-wrap: wrap; align-items: flex-end;",
+                        div { class: "form-group", style: "margin: 0;",
+                            label { "Kind" }
+                            select {
+                                value: "{new_kind}",
+                                oninput: move |e| new_kind.set(e.value()),
+                                for (value, klabel) in ARTIFACT_KINDS.iter().copied() {
+                                    option { value: "{value}", "{klabel}" }
+                                }
+                            }
+                        }
+                        div { class: "form-group", style: "margin: 0; flex: 1; min-width: 240px;",
+                            label { "Reference (URL / path / text)" }
+                            input {
+                                r#type: "text",
+                                placeholder: "https://git.example.com/acme.git",
+                                value: "{new_source}",
+                                oninput: move |e| new_source.set(e.value()),
+                            }
+                        }
+                        if new_kind() == "git_repo" {
+                            div { class: "form-group", style: "margin: 0;",
+                                label { "Branch" }
+                                input {
+                                    r#type: "text",
+                                    value: "{new_branch}",
+                                    oninput: move |e| new_branch.set(e.value()),
+                                }
+                            }
+                        }
+                        button {
+                            class: "btn btn-secondary",
+                            disabled: new_source().trim().is_empty() || new_source_error.is_some(),
+                            onclick: move |_| {
+                                let kind = new_kind();
+                                if !new_source().trim().is_empty()
+                                    && validate_artifact_ref(&kind, &new_source()).is_none()
+                                {
+                                    let branch = if kind == "git_repo" { Some(new_branch()) } else { None };
+                                    artifacts.write().push(ArtifactInputDto {
+                                        kind,
+                                        source_ref: new_source(),
+                                        branch,
+                                        plc_format: None,
+                                    });
+                                    new_source.set(String::new());
+                                }
+                            },
+                            "+ Add"
+                        }
+                    }
+                    if let Some(err) = new_source_error.clone() {
+                        div { style: "color: var(--danger, #d33); font-size: 0.85em; margin-top: 6px;", "{err}" }
+                    }
+
+                    div { style: "margin-top: 16px;",
+                        if has_artifacts {
+                            for (i, a) in artifacts().iter().enumerate() {
+                                div {
+                                    style: "display: flex; justify-content: space-between; align-items: center; padding: 8px 12px; border: 1px solid var(--border, #333); border-radius: 6px; margin-bottom: 6px;",
+                                    span {
+                                        span { style: "opacity: 0.7;", "{kind_label(&a.kind)}: " }
+                                        "{a.source_ref}"
+                                    }
+                                    button {
+                                        class: "btn btn-ghost-danger btn-sm",
+                                        onclick: move |_| { artifacts.write().remove(i); },
+                                        "Remove"
+                                    }
+                                }
+                            }
+                        } else {
+                            div { style: "opacity: 0.6;", "No artifacts yet. Add at least one." }
+                        }
+                    }
+                }
+            }
+
+            // ---- Step 2: review + create ----
+            if step_now == 2 {
+                div { class: "card-header", "Review" }
+                div { style: "padding: 16px;",
+                    div { class: "wizard-summary",
+                        div { strong { "Name: " } "{name()}" }
+                        div { strong { "Type: " } "{type_label(&target_type())}" }
+                        div { strong { "Artifacts:" } }
+                        ul {
+                            for a in artifacts() {
+                                li { "{kind_label(&a.kind)}: {a.source_ref}" }
+                            }
+                        }
+                    }
+                    div { style: "margin-top: 12px; opacity: 0.7; font-size: 0.9em;",
+                        "The applicable scans (SAST / DAST / firmware / PLC) are shown after the target is created."
+                    }
+                }
+            }
+
+            // ---- Step 3: created ----
+            if step_now == 3 {
+                div { class: "card-header", "Target onboarded" }
+                div { style: "padding: 16px;",
+                    p {
+                        strong { "{name()}" }
+                        " was created."
+                        if let Some(s) = suggested() {
+                            span { " Suggested type from detection: " strong { "{type_label(&s)}" } "." }
+                        }
+                    }
+                    h4 { style: "margin-top: 16px;", "Applicable scans" }
+                    if scans().is_empty() {
+                        div { style: "opacity: 0.6;", "No scans available (no code / URL / firmware artifact present)." }
+                    } else {
+                        for s in scans() {
+                            ScanRow { scan: s }
+                        }
+                    }
+                    if let Some(msg) = scan_msg() {
+                        div { style: "margin-top: 8px; color: var(--success, #2a2);", "{msg}" }
+                    }
+                    div { style: "margin-top: 16px; display: flex; gap: 8px;",
+                        button {
+                            class: "btn btn-primary",
+                            onclick: move |_| {
+                                if let Some(id) = created_id() {
+                                    scan_msg.set(Some("Scan triggered...".to_string()));
+                                    spawn(async move {
+                                        match trigger_target_scan(id).await {
+                                            Ok(_) => scan_msg.set(Some(
+                                                "Scan started — findings will appear as it runs.".to_string(),
+                                            )),
+                                            Err(e) => scan_msg.set(Some(format!("Failed to start scan: {e}"))),
+                                        }
+                                    });
+                                }
+                            },
+                            "Run scan"
+                        }
+                        button {
+                            class: "btn btn-secondary",
+                            onclick: move |_| {
+                                step.set(0);
+                                name.set(String::new());
+                                target_type.set(String::new());
+                                description.set(String::new());
+                                artifacts.write().clear();
+                                scans.write().clear();
+                                suggested.set(None);
+                                created_id.set(None);
+                                scan_msg.set(None);
+                                error.set(None);
+                            },
+                            "Onboard another"
+                        }
+                    }
+                }
+            }
+        }
+
+        // ---- Footer navigation ----
+        if step_now < 3 {
+            div { style: "display: flex; justify-content: space-between; margin-top: 16px;",
+                button {
+                    class: "btn btn-back",
+                    disabled: step_now == 0,
+                    onclick: move |_| { if step() > 0 { step.set(step() - 1); } },
+                    "Back"
+                }
+                if step_now < 2 {
+                    button {
+                        class: "btn btn-primary",
+                        disabled: (step_now == 0 && !can_advance_type) || (step_now == 1 && !has_artifacts),
+                        onclick: move |_| step.set(step() + 1),
+                        "Next"
+                    }
+                } else {
+                    button {
+                        class: "btn btn-primary",
+                        disabled: creating(),
+                        onclick: move |_| {
+                            let n = name();
+                            let tt = target_type();
+                            let desc = description();
+                            let arts = artifacts();
+                            let d = if desc.trim().is_empty() { None } else { Some(desc) };
+                            creating.set(true);
+                            error.set(None);
+                            spawn(async move {
+                                match create_target(n, tt, d, arts).await {
+                                    Ok(resp) => {
+                                        let id = resp
+                                            .data
+                                            .get("_id")
+                                            .and_then(|o| o.get("$oid"))
+                                            .and_then(|s| s.as_str())
+                                            .map(String::from);
+                                        if let Some(id) = id {
+                                            created_id.set(Some(id.clone()));
+                                            if let Ok(sc) = fetch_applicable_scans(id.clone()).await {
+                                                scans.set(sc.data.scans);
+                                            }
+                                            if let Ok(det) = detect_target(id).await {
+                                                suggested.set(
+                                                    det.data
+                                                        .get("classification")
+                                                        .and_then(|c| c.get("suggested"))
+                                                        .and_then(|s| s.as_str())
+                                                        .map(String::from),
+                                                );
+                                            }
+                                        }
+                                        step.set(3);
+                                    }
+                                    Err(e) => error.set(Some(e.to_string())),
+                                }
+                                creating.set(false);
+                            });
+                        },
+                        if creating() { "Creating..." } else { "Create target" }
+                    }
+                }
+            }
+        }
+    }
+}

compliance-dashboard/src/pages/overview.rs

@@ -6,7 +6,7 @@ use crate::app::Route;
 use crate::components::page_header::PageHeader;
 use crate::components::stat_card::StatCard;
 use crate::infrastructure::mcp::fetch_mcp_servers;
-use crate::infrastructure::repositories::fetch_repositories;
+use crate::infrastructure::onboarding::fetch_targets;
 
 #[cfg(feature = "server")]
 use crate::infrastructure::stats::fetch_overview_stats;
@@ -26,7 +26,7 @@ pub fn OverviewPage() -> Element {
         }
     });
 
-    let repos = use_resource(|| async { fetch_repositories(1).await.ok() });
+    let repos = use_resource(|| async { fetch_targets().await.ok() });
     let mcp_servers = use_resource(|| async { fetch_mcp_servers().await.ok() });
 
     rsx! {
@@ -94,8 +94,8 @@ pub fn OverviewPage() -> Element {
                                         style: "display: grid; grid-template-columns: repeat(3, 1fr); gap: 1rem; padding: 1rem;",
                                         for repo in repo_list {
                                             {
-                                                let repo_id = repo.id.map(|id| id.to_hex()).unwrap_or_default();
+                                                let repo_id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                                let name = repo.name.clone();
+                                                let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
                                                 rsx! {
                                                     Link {
                                                         to: Route::ChatPage { repo_id },

compliance-dashboard/src/pages/repositories.rs

@@ -1,657 +0,0 @@
-use dioxus::prelude::*;
-use dioxus_free_icons::icons::bs_icons::*;
-#[allow(unused_imports)]
-use dioxus_free_icons::icons::bs_icons::{BsGear, BsPencil};
-use dioxus_free_icons::Icon;
-
-use crate::components::page_header::PageHeader;
-use crate::components::pagination::Pagination;
-use crate::components::toast::{ToastType, Toasts};
-use crate::pages::graph_explorer::GraphExplorerInline;
-
-async fn async_sleep_5s() {
-    #[cfg(feature = "web")]
-    {
-        gloo_timers::future::TimeoutFuture::new(5_000).await;
-    }
-    #[cfg(not(feature = "web"))]
-    {
-        tokio::time::sleep(std::time::Duration::from_secs(5)).await;
-    }
-}
-
-#[component]
-pub fn RepositoriesPage() -> Element {
-    let mut page = use_signal(|| 1u64);
-    let mut show_add_form = use_signal(|| false);
-    let mut name = use_signal(String::new);
-    let mut git_url = use_signal(String::new);
-    let mut branch = use_signal(|| "main".to_string());
-    let mut auth_token = use_signal(String::new);
-    let mut auth_username = use_signal(String::new);
-    let mut show_auth = use_signal(|| false);
-    let mut ssh_public_key = use_signal(String::new);
-    let mut show_tracker = use_signal(|| false);
-    let mut tracker_type_val = use_signal(String::new);
-    let mut tracker_owner_val = use_signal(String::new);
-    let mut tracker_repo_val = use_signal(String::new);
-    let mut tracker_token_val = use_signal(String::new);
-    let mut adding = use_signal(|| false);
-    let mut toasts = use_context::<Toasts>();
-    let mut confirm_delete = use_signal(|| Option::<(String, String)>::None); // (id, name)
-    let mut edit_repo_id = use_signal(|| Option::<String>::None);
-    let mut edit_name = use_signal(String::new);
-    let mut edit_branch = use_signal(String::new);
-    let mut edit_tracker_type = use_signal(String::new);
-    let mut edit_tracker_owner = use_signal(String::new);
-    let mut edit_tracker_repo = use_signal(String::new);
-    let mut edit_tracker_token = use_signal(String::new);
-    let mut edit_saving = use_signal(|| false);
-    let mut edit_webhook_secret = use_signal(|| Option::<String>::None);
-    let mut edit_webhook_tracker = use_signal(String::new);
-    let mut scanning_ids = use_signal(Vec::<String>::new);
-    let mut graph_repo_id = use_signal(|| Option::<String>::None);
-
-    let mut repos = use_resource(move || {
-        let p = page();
-        async move {
-            crate::infrastructure::repositories::fetch_repositories(p)
-                .await
-                .ok()
-        }
-    });
-
-    rsx! {
-        PageHeader {
-            title: "Repositories",
-            description: "Tracked git repositories",
-        }
-
-        div { style: "margin-bottom: 16px;",
-            button {
-                class: "btn btn-primary",
-                onclick: move |_| show_add_form.toggle(),
-                if show_add_form() { "Cancel" } else { "+ Add Repository" }
-            }
-        }
-
-        if show_add_form() {
-            div { class: "card",
-                div { class: "card-header", "Add Repository" }
-                div { class: "form-group",
-                    label { "Name" }
-                    input {
-                        r#type: "text",
-                        placeholder: "my-project",
-                        value: "{name}",
-                        oninput: move |e| name.set(e.value()),
-                    }
-                }
-                div { class: "form-group",
-                    label { "Git URL" }
-                    input {
-                        r#type: "text",
-                        placeholder: "https://github.com/org/repo.git  or  git@github.com:org/repo.git",
-                        value: "{git_url}",
-                        oninput: move |e| git_url.set(e.value()),
-                    }
-                }
-                div { class: "form-group",
-                    label { "Default Branch" }
-                    input {
-                        r#type: "text",
-                        placeholder: "main",
-                        value: "{branch}",
-                        oninput: move |e| branch.set(e.value()),
-                    }
-                }
-
-                // Private repo auth section
-                div { style: "margin-top: 8px;",
-                    button {
-                        class: "btn btn-ghost",
-                        style: "font-size: 12px; padding: 4px 8px;",
-                        onclick: move |_| {
-                            let opening = !show_auth();
-                            show_auth.toggle();
-                            if opening {
-                                // Fetch SSH key every time the section opens
-                                ssh_public_key.set(String::new());
-                                spawn(async move {
-                                    match crate::infrastructure::repositories::fetch_ssh_public_key().await {
-                                        Ok(key) => ssh_public_key.set(key),
-                                        Err(_) => ssh_public_key.set("(not available)".to_string()),
-                                    }
-                                });
-                            }
-                        },
-                        if show_auth() { "Hide auth options" } else { "Private repository?" }
-                    }
-                }
-
-                if show_auth() {
-                    div { class: "auth-section", style: "margin-top: 12px; padding: 12px; border: 1px solid var(--border-subtle); border-radius: 8px;",
-                        // SSH deploy key display
-                        div { style: "margin-bottom: 12px;",
-                            label { style: "font-size: 12px; color: var(--text-secondary);",
-                                "For SSH URLs: add this deploy key (read-only) to your repository"
-                            }
-                            div {
-                                class: "copyable",
-                                style: "margin-top: 4px; padding: 8px; background: var(--bg-secondary); border-radius: 4px;",
-                                code {
-                                    style: "font-size: 11px; word-break: break-all; user-select: all;",
-                                    if ssh_public_key().is_empty() {
-                                        "Loading..."
-                                    } else {
-                                        "{ssh_public_key}"
-                                    }
-                                }
-                                if !ssh_public_key().is_empty() {
-                                    crate::components::copy_button::CopyButton { value: ssh_public_key(), small: true }
-                                }
-                            }
-                        }
-
-                        // HTTPS auth fields
-                        p { style: "font-size: 12px; color: var(--text-secondary); margin-bottom: 8px;",
-                            "For HTTPS URLs: provide an access token (PAT) or username/password"
-                        }
-                        div { class: "form-group",
-                            label { "Auth Token / Password" }
-                            input {
-                                r#type: "password",
-                                placeholder: "ghp_xxxx or personal access token",
-                                value: "{auth_token}",
-                                oninput: move |e| auth_token.set(e.value()),
-                            }
-                        }
-                        div { class: "form-group",
-                            label { "Username (optional, defaults to x-access-token)" }
-                            input {
-                                r#type: "text",
-                                placeholder: "x-access-token",
-                                value: "{auth_username}",
-                                oninput: move |e| auth_username.set(e.value()),
-                            }
-                        }
-                    }
-                }
-
-                // Issue tracker config section
-                div { style: "margin-top: 8px;",
-                    button {
-                        class: "btn btn-ghost",
-                        style: "font-size: 12px; padding: 4px 8px;",
-                        onclick: move |_| show_tracker.toggle(),
-                        if show_tracker() { "Hide tracker options" } else { "Issue tracker?" }
-                    }
-                }
-
-                if show_tracker() {
-                    div { class: "auth-section", style: "margin-top: 12px; padding: 12px; border: 1px solid var(--border-subtle); border-radius: 8px;",
-                        p { style: "font-size: 12px; color: var(--text-secondary); margin-bottom: 8px;",
-                            "Configure an issue tracker to auto-create issues from findings"
-                        }
-                        div { class: "form-group",
-                            label { "Tracker Type" }
-                            select {
-                                value: "{tracker_type_val}",
-                                onchange: move |e| tracker_type_val.set(e.value()),
-                                option { value: "", "None" }
-                                option { value: "github", "GitHub" }
-                                option { value: "gitlab", "GitLab" }
-                                option { value: "gitea", "Gitea" }
-                                option { value: "jira", "Jira" }
-                            }
-                        }
-                        div { class: "form-group",
-                            label { "Owner / Namespace" }
-                            input {
-                                r#type: "text",
-                                placeholder: "org-name",
-                                value: "{tracker_owner_val}",
-                                oninput: move |e| tracker_owner_val.set(e.value()),
-                            }
-                        }
-                        div { class: "form-group",
-                            label { "Repository / Project" }
-                            input {
-                                r#type: "text",
-                                placeholder: "repo-name",
-                                value: "{tracker_repo_val}",
-                                oninput: move |e| tracker_repo_val.set(e.value()),
-                            }
-                        }
-                        div { class: "form-group",
-                            label { "Tracker Token (PAT)" }
-                            input {
-                                r#type: "password",
-                                placeholder: "ghp_xxxx / glpat-xxxx",
-                                value: "{tracker_token_val}",
-                                oninput: move |e| tracker_token_val.set(e.value()),
-                            }
-                        }
-                    }
-                }
-
-                button {
-                    class: "btn btn-primary",
-                    disabled: adding(),
-                    onclick: move |_| {
-                        let n = name();
-                        let u = git_url();
-                        let b = branch();
-                        let tok = {
-                            let v = auth_token();
-                            if v.is_empty() { None } else { Some(v) }
-                        };
-                        let usr = {
-                            let v = auth_username();
-                            if v.is_empty() { None } else { Some(v) }
-                        };
-                        let tt = { let v = tracker_type_val(); if v.is_empty() { None } else { Some(v) } };
-                        let t_owner = { let v = tracker_owner_val(); if v.is_empty() { None } else { Some(v) } };
-                        let t_repo = { let v = tracker_repo_val(); if v.is_empty() { None } else { Some(v) } };
-                        let t_tok = { let v = tracker_token_val(); if v.is_empty() { None } else { Some(v) } };
-                        adding.set(true);
-                        spawn(async move {
-                            match crate::infrastructure::repositories::add_repository(n, u, b, tok, usr, tt, t_owner, t_repo, t_tok).await {
-                                Ok(_) => {
-                                    toasts.push(ToastType::Success, "Repository added");
-                                    repos.restart();
-                                }
-                                Err(e) => toasts.push(ToastType::Error, e.to_string()),
-                            }
-                            adding.set(false);
-                        });
-                        show_add_form.set(false);
-                        show_auth.set(false);
-                        show_tracker.set(false);
-                        name.set(String::new());
-                        git_url.set(String::new());
-                        auth_token.set(String::new());
-                        auth_username.set(String::new());
-                        tracker_type_val.set(String::new());
-                        tracker_owner_val.set(String::new());
-                        tracker_repo_val.set(String::new());
-                        tracker_token_val.set(String::new());
-                    },
-                    if adding() { "Validating..." } else { "Add" }
-                }
-            }
-        }
-
-        // ── Delete confirmation dialog ──
-        if let Some((del_id, del_name)) = confirm_delete() {
-            div { class: "modal-overlay",
-                div { class: "modal-dialog",
-                    h3 { "Delete Repository" }
-                    p {
-                        "Are you sure you want to delete "
-                        strong { "{del_name}" }
-                        "?"
-                    }
-                    p { class: "modal-warning",
-                        "This will permanently remove all associated findings, SBOM entries, scan runs, graph data, embeddings, and CVE alerts."
-                    }
-                    div { class: "modal-actions",
-                        button {
-                            class: "btn btn-secondary",
-                            onclick: move |_| confirm_delete.set(None),
-                            "Cancel"
-                        }
-                        button {
-                            class: "btn btn-danger",
-                            onclick: move |_| {
-                                let id = del_id.clone();
-                                let name = del_name.clone();
-                                confirm_delete.set(None);
-                                spawn(async move {
-                                    match crate::infrastructure::repositories::delete_repository(id).await {
-                                        Ok(_) => {
-                                            toasts.push(ToastType::Success, format!("{name} deleted"));
-                                            repos.restart();
-                                        }
-                                        Err(e) => toasts.push(ToastType::Error, e.to_string()),
-                                    }
-                                });
-                            },
-                            "Delete"
-                        }
-                    }
-                }
-            }
-        }
-
-        // ── Edit repository dialog ──
-        if let Some(eid) = edit_repo_id() {
-            div { class: "modal-overlay",
-                div { class: "modal-dialog",
-                    h3 { "Edit Repository" }
-                    div { class: "form-group",
-                        label { "Name" }
-                        input {
-                            r#type: "text",
-                            value: "{edit_name}",
-                            oninput: move |e| edit_name.set(e.value()),
-                        }
-                    }
-                    div { class: "form-group",
-                        label { "Default Branch" }
-                        input {
-                            r#type: "text",
-                            value: "{edit_branch}",
-                            oninput: move |e| edit_branch.set(e.value()),
-                        }
-                    }
-                    h4 { style: "margin-top: 16px; margin-bottom: 8px; font-size: 14px; color: var(--text-secondary);", "Issue Tracker" }
-                    div { class: "form-group",
-                        label { "Tracker Type" }
-                        select {
-                            value: "{edit_tracker_type}",
-                            onchange: move |e| edit_tracker_type.set(e.value()),
-                            option { value: "", "None" }
-                            option { value: "github", "GitHub" }
-                            option { value: "gitlab", "GitLab" }
-                            option { value: "gitea", "Gitea" }
-                            option { value: "jira", "Jira" }
-                        }
-                    }
-                    div { class: "form-group",
-                        label { "Owner / Namespace" }
-                        input {
-                            r#type: "text",
-                            placeholder: "org-name",
-                            value: "{edit_tracker_owner}",
-                            oninput: move |e| edit_tracker_owner.set(e.value()),
-                        }
-                    }
-                    div { class: "form-group",
-                        label { "Repository / Project" }
-                        input {
-                            r#type: "text",
-                            placeholder: "repo-name",
-                            value: "{edit_tracker_repo}",
-                            oninput: move |e| edit_tracker_repo.set(e.value()),
-                        }
-                    }
-                    div { class: "form-group",
-                        label { "Tracker Token (leave empty to keep existing)" }
-                        input {
-                            r#type: "password",
-                            placeholder: "Enter new token to change",
-                            value: "{edit_tracker_token}",
-                            oninput: move |e| edit_tracker_token.set(e.value()),
-                        }
-                    }
-                    // Webhook configuration section
-                    if let Some(secret) = edit_webhook_secret() {
-                        h4 {
-                            style: "margin-top: 16px; margin-bottom: 8px; font-size: 14px; color: var(--text-secondary);",
-                            "Webhook Configuration"
-                        }
-                        p {
-                            style: "font-size: 12px; color: var(--text-secondary); margin-bottom: 8px;",
-                            "Add this webhook in your repository settings to enable push-triggered scans and PR reviews."
-                        }
-                        div { class: "form-group",
-                            label { "Webhook URL" }
-                            {
-                                #[cfg(feature = "web")]
-                                let origin = web_sys::window()
-                                    .and_then(|w: web_sys::Window| w.location().origin().ok())
-                                    .unwrap_or_default();
-                                #[cfg(not(feature = "web"))]
-                                let origin = String::new();
-                                let webhook_url = format!("{origin}/webhook/{}/{eid}", edit_webhook_tracker());
-                                rsx! {
-                                    div { class: "copyable",
-                                        input {
-                                            r#type: "text",
-                                            readonly: true,
-                                            style: "font-family: monospace; font-size: 12px; flex: 1;",
-                                            value: "{webhook_url}",
-                                        }
-                                        crate::components::copy_button::CopyButton { value: webhook_url.clone() }
-                                    }
-                                }
-                            }
-                        }
-                        div { class: "form-group",
-                            label { "Webhook Secret" }
-                            div { class: "copyable",
-                                input {
-                                    r#type: "text",
-                                    readonly: true,
-                                    style: "font-family: monospace; font-size: 12px; flex: 1;",
-                                    value: "{secret}",
-                                }
-                                crate::components::copy_button::CopyButton { value: secret.clone() }
-                            }
-                        }
-                    }
-                    div { class: "modal-actions",
-                        button {
-                            class: "btn btn-secondary",
-                            onclick: move |_| edit_repo_id.set(None),
-                            "Cancel"
-                        }
-                        button {
-                            class: "btn btn-primary",
-                            disabled: edit_saving(),
-                            onclick: move |_| {
-                                let id = eid.clone();
-                                let nm = { let v = edit_name(); if v.is_empty() { None } else { Some(v) } };
-                                let br = { let v = edit_branch(); if v.is_empty() { None } else { Some(v) } };
-                                let tt = { let v = edit_tracker_type(); if v.is_empty() { None } else { Some(v) } };
-                                let t_owner = { let v = edit_tracker_owner(); if v.is_empty() { None } else { Some(v) } };
-                                let t_repo = { let v = edit_tracker_repo(); if v.is_empty() { None } else { Some(v) } };
-                                let t_tok = { let v = edit_tracker_token(); if v.is_empty() { None } else { Some(v) } };
-                                edit_saving.set(true);
-                                spawn(async move {
-                                    match crate::infrastructure::repositories::update_repository(
-                                        id, nm, br, None, None, tt, t_owner, t_repo, t_tok, None,
-                                    ).await {
-                                        Ok(_) => {
-                                            toasts.push(ToastType::Success, "Repository updated");
-                                            repos.restart();
-                                        }
-                                        Err(e) => toasts.push(ToastType::Error, e.to_string()),
-                                    }
-                                    edit_saving.set(false);
-                                    edit_repo_id.set(None);
-                                });
-                            },
-                            if edit_saving() { "Saving..." } else { "Save" }
-                        }
-                    }
-                }
-            }
-        }
-
-        match &*repos.read() {
-            Some(Some(resp)) => {
-                let total_pages = resp.total.unwrap_or(0).div_ceil(20).max(1);
-                rsx! {
-                    div { class: "card",
-                        div { class: "table-wrapper",
-                            table {
-                                thead {
-                                    tr {
-                                        th { "Name" }
-                                        th { "Git URL" }
-                                        th { "Branch" }
-                                        th { "Findings" }
-                                        th { "Last Scanned" }
-                                        th { "Actions" }
-                                    }
-                                }
-                                tbody {
-                                    for repo in &resp.data {
-                                        {
-                                            let repo_id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
-                                            let repo_id_scan = repo_id.clone();
-                                            let repo_id_del = repo_id.clone();
-                                            let repo_id_edit = repo_id.clone();
-                                            let repo_name_del = repo.name.clone();
-                                            let edit_repo_data = repo.clone();
-                                            let is_scanning = scanning_ids().contains(&repo_id);
-                                            rsx! {
-                                                tr {
-                                                    td { "{repo.name}" }
-                                                    td {
-                                                        style: "font-size: 12px; font-family: monospace;",
-                                                        "{repo.git_url}"
-                                                    }
-                                                    td { "{repo.default_branch}" }
-                                                    td { "{repo.findings_count}" }
-                                                    td {
-                                                        {
-                                                            let now = chrono::Utc::now();
-                                                            let diff = now.signed_duration_since(repo.updated_at);
-                                                            let label = if diff.num_minutes() < 1 {
-                                                                "just now".to_string()
-                                                            } else if diff.num_hours() < 1 {
-                                                                format!("{}m ago", diff.num_minutes())
-                                                            } else if diff.num_days() < 1 {
-                                                                format!("{}h ago", diff.num_hours())
-                                                            } else if diff.num_days() < 30 {
-                                                                format!("{}d ago", diff.num_days())
-                                                            } else {
-                                                                repo.updated_at.format("%Y-%m-%d").to_string()
-                                                            };
-                                                            rsx! { span { style: "font-size: 12px;", "{label}" } }
-                                                        }
-                                                    }
-                                                    td { style: "display: flex; gap: 4px;",
-                                                        button {
-                                                            class: if graph_repo_id().as_deref() == Some(repo_id.as_str()) { "btn btn-ghost btn-active" } else { "btn btn-ghost" },
-                                                            title: "View graph",
-                                                            onclick: {
-                                                                let rid = repo_id.clone();
-                                                                move |_| {
-                                                                    if graph_repo_id().as_deref() == Some(rid.as_str()) {
-                                                                        graph_repo_id.set(None);
-                                                                    } else {
-                                                                        graph_repo_id.set(Some(rid.clone()));
-                                                                    }
-                                                                }
-                                                            },
-                                                            Icon { icon: BsDiagram3, width: 16, height: 16 }
-                                                        }
-                                                        button {
-                                                            class: "btn btn-ghost",
-                                                            title: "Edit repository",
-                                                            onclick: move |_| {
-                                                                edit_name.set(edit_repo_data.name.clone());
-                                                                edit_branch.set(edit_repo_data.default_branch.clone());
-                                                                edit_tracker_type.set(
-                                                                    edit_repo_data.tracker_type.as_ref().map(|t| t.to_string()).unwrap_or_default()
-                                                                );
-                                                                edit_tracker_owner.set(edit_repo_data.tracker_owner.clone().unwrap_or_default());
-                                                                edit_tracker_repo.set(edit_repo_data.tracker_repo.clone().unwrap_or_default());
-                                                                edit_tracker_token.set(String::new());
-                                                                edit_webhook_secret.set(None);
-                                                                edit_webhook_tracker.set(String::new());
-                                                                edit_repo_id.set(Some(repo_id_edit.clone()));
-                                                                // Fetch webhook config in background
-                                                                let rid = repo_id_edit.clone();
-                                                                spawn(async move {
-                                                                    if let Ok(cfg) = crate::infrastructure::repositories::fetch_webhook_config(rid).await {
-                                                                        edit_webhook_secret.set(cfg.webhook_secret);
-                                                                        edit_webhook_tracker.set(cfg.tracker_type);
-                                                                    }
-                                                                });
-                                                            },
-                                                            Icon { icon: BsPencil, width: 16, height: 16 }
-                                                        }
-                                                        button {
-                                                            class: if is_scanning { "btn btn-ghost btn-scanning" } else { "btn btn-ghost" },
-                                                            title: "Trigger scan",
-                                                            disabled: is_scanning,
-                                                            onclick: move |_| {
-                                                                let id = repo_id_scan.clone();
-                                                                // Add to scanning set
-                                                                let mut ids = scanning_ids();
-                                                                ids.push(id.clone());
-                                                                scanning_ids.set(ids);
-                                                                spawn(async move {
-                                                                    match crate::infrastructure::repositories::trigger_repo_scan(id.clone()).await {
-                                                                        Ok(_) => {
-                                                                            toasts.push(ToastType::Success, "Scan triggered");
-                                                                            // Poll until scan completes
-                                                                            loop {
-                                                                                async_sleep_5s().await;
-                                                                                match crate::infrastructure::repositories::check_repo_scanning(id.clone()).await {
-                                                                                    Ok(false) => break,
-                                                                                    Ok(true) => continue,
-                                                                                    Err(_) => break,
-                                                                                }
-                                                                            }
-                                                                            toasts.push(ToastType::Success, "Scan complete");
-                                                                            repos.restart();
-                                                                        }
-                                                                        Err(e) => toasts.push(ToastType::Error, e.to_string()),
-                                                                    }
-                                                                    // Remove from scanning set
-                                                                    let mut ids = scanning_ids();
-                                                                    ids.retain(|i| i != &id);
-                                                                    scanning_ids.set(ids);
-                                                                });
-                                                            },
-                                                            if is_scanning {
-                                                                span { class: "spinner" }
-                                                            } else {
-                                                                Icon { icon: BsPlayCircle, width: 16, height: 16 }
-                                                            }
-                                                        }
-                                                        button {
-                                                            class: "btn btn-ghost btn-ghost-danger",
-                                                            title: "Delete repository",
-                                                            onclick: move |_| {
-                                                                confirm_delete.set(Some((repo_id_del.clone(), repo_name_del.clone())));
-                                                            },
-                                                            Icon { icon: BsTrash, width: 16, height: 16 }
-                                                        }
-                                                    }
-                                                }
-                                            }
-                                        }
-                                    }
-                                }
-                            }
-                        }
-                        Pagination {
-                            current_page: page(),
-                            total_pages: total_pages,
-                            on_page_change: move |p| page.set(p),
-                        }
-                    }
-
-                    // Inline graph explorer
-                    if let Some(rid) = graph_repo_id() {
-                        div { class: "card", style: "margin-top: 16px;",
-                            div { class: "card-header", style: "display: flex; justify-content: space-between; align-items: center;",
-                                span { "Code Graph" }
-                                button {
-                                    class: "btn btn-sm btn-ghost",
-                                    title: "Close graph",
-                                    onclick: move |_| { graph_repo_id.set(None); },
-                                    Icon { icon: BsX, width: 18, height: 18 }
-                                }
-                            }
-                            GraphExplorerInline { repo_id: rid }
-                        }
-                    }
-                }
-            },
-            Some(None) => rsx! {
-                div { class: "card", p { "Failed to load repositories." } }
-            },
-            None => rsx! {
-                div { class: "loading", "Loading repositories..." }
-            },
-        }
-    }
-}

compliance-dashboard/src/pages/sbom.rs

@@ -28,9 +28,9 @@ pub fn SbomPage() -> Element {
     let mut diff_repo_a = use_signal(String::new);
     let mut diff_repo_b = use_signal(String::new);
 
-    // ── Repos for dropdowns ──
+    // ── Targets for dropdowns ──
     let repos = use_resource(|| async {
-        crate::infrastructure::repositories::fetch_repositories(1)
+        crate::infrastructure::onboarding::fetch_targets()
             .await
             .ok()
     });
@@ -114,14 +114,14 @@ pub fn SbomPage() -> Element {
                 select {
                     class: "sbom-filter-select",
                     onchange: move |e| { repo_filter.set(e.value()); page.set(1); },
-                    option { value: "", "All Repositories" }
+                    option { value: "", "All Targets" }
                     {
                         match &*repos.read() {
                             Some(Some(resp)) => rsx! {
                                 for repo in &resp.data {
                                     {
-                                        let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
+                                        let id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                        let name = repo.name.clone();
+                                        let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
                                         rsx! { option { value: "{id}", "{name}" } }
                                     }
                                 }
@@ -476,8 +476,8 @@ pub fn SbomPage() -> Element {
                                     Some(Some(resp)) => rsx! {
                                         for repo in &resp.data {
                                             {
-                                                let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
+                                                let id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                                let name = repo.name.clone();
+                                                let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
                                                 rsx! { option { value: "{id}", "{name}" } }
                                             }
                                         }
@@ -498,8 +498,8 @@ pub fn SbomPage() -> Element {
                                     Some(Some(resp)) => rsx! {
                                         for repo in &resp.data {
                                             {
-                                                let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
+                                                let id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
-                                                let name = repo.name.clone();
+                                                let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
                                                 rsx! { option { value: "{id}", "{name}" } }
                                             }
                                         }

compliance-dashboard/src/pages/targets.rs

@@ -0,0 +1,544 @@
+//! Targets page — lists onboarded targets (the unified `OnboardedTarget`
+//! records the wizard creates) and lets the user run a scan, inspect the
+//! classification / applicable scans, or delete a target.
+//!
+//! Creation lives in the Onboard wizard (`/onboard`); this page is the
+//! "where is my target, and what did the scan find" surface.
+
+use dioxus::prelude::*;
+use dioxus_free_icons::icons::bs_icons::*;
+use dioxus_free_icons::Icon;
+
+use crate::components::page_header::PageHeader;
+use crate::components::toast::{ToastType, Toasts};
+use crate::infrastructure::onboarding::{
+    delete_target, fetch_applicable_scans, fetch_targets, trigger_target_scan, update_target,
+    validate_artifact_ref, validate_target_name, ArtifactInputDto,
+};
+
+/// The nine target families (value, label) for the edit form's type selector.
+const TARGET_TYPES: &[(&str, &str)] = &[
+    ("web_app", "Web Application"),
+    ("backend_service", "Backend / API"),
+    ("desktop_app", "Desktop App"),
+    ("android_app", "Android App"),
+    ("ios_app", "iOS App"),
+    ("firmware_bare_metal", "Firmware — bare metal"),
+    ("firmware_rtos", "Firmware — RTOS"),
+    ("embedded_linux_yocto", "Embedded Linux / Yocto"),
+    ("plc_sps", "PLC / SPS"),
+];
+
+/// The artifact kinds (value, label) for the edit form.
+const ARTIFACT_KINDS: &[(&str, &str)] = &[
+    ("git_repo", "Git repository"),
+    ("source_archive", "Source archive (zip)"),
+    ("firmware_image", "Firmware image"),
+    ("mobile_package", "Mobile package (APK/IPA)"),
+    ("container_image", "Container image"),
+    ("live_url", "Live URL"),
+    ("plc_project", "PLC project"),
+    ("plaintext_description", "Description (text)"),
+];
+
+/// Prettify a snake_case target-type value into a human label.
+fn pretty_type(v: &str) -> String {
+    match v {
+        "web_app" => "Web Application".into(),
+        "backend_service" => "Backend / API".into(),
+        "desktop_app" => "Desktop App".into(),
+        "android_app" => "Android App".into(),
+        "ios_app" => "iOS App".into(),
+        "firmware_bare_metal" => "Firmware — bare metal".into(),
+        "firmware_rtos" => "Firmware — RTOS".into(),
+        "embedded_linux_yocto" => "Embedded Linux / Yocto".into(),
+        "plc_sps" => "PLC / SPS".into(),
+        other => other.replace('_', " "),
+    }
+}
+
+fn str_at<'a>(v: &'a serde_json::Value, key: &str) -> &'a str {
+    v.get(key).and_then(|x| x.as_str()).unwrap_or("")
+}
+
+fn target_id(t: &serde_json::Value) -> String {
+    t.get("_id")
+        .and_then(|o| o.get("$oid"))
+        .and_then(|s| s.as_str())
+        .unwrap_or_default()
+        .to_string()
+}
+
+/// The applicable-scans matrix for one target, fetched on expand.
+#[component]
+fn TargetScans(id: String) -> Element {
+    let scan_id = id.clone();
+    let scans = use_resource(move || {
+        let id = scan_id.clone();
+        async move { fetch_applicable_scans(id).await.ok() }
+    });
+
+    let snapshot = scans.read().clone();
+    match &snapshot {
+        Some(Some(resp)) => {
+            let rows = resp.data.scans.clone();
+            let pentest = resp.data.pentest_supported;
+            rsx! {
+                div { style: "margin-top: 8px;",
+                    if rows.is_empty() {
+                        div { style: "opacity: 0.6;", "No scans available (no code / URL / firmware artifact present)." }
+                    }
+                    for s in rows {
+                        {
+                            let name = str_at(&s, "scan").to_string();
+                            let rationale = str_at(&s, "rationale").to_string();
+                            let blocked = s.get("blocked_reason").and_then(|b| b.as_str()).map(String::from);
+                            let default_on = s.get("default_on").and_then(|b| b.as_bool()).unwrap_or(false);
+                            let badge = if blocked.is_some() {
+                                "badge badge-info"
+                            } else if default_on {
+                                "badge badge-success"
+                            } else {
+                                "badge"
+                            };
+                            rsx! {
+                                div { style: "display: flex; gap: 8px; align-items: center; padding: 4px 0;",
+                                    span { class: "{badge}", "{name}" }
+                                    span { style: "opacity: 0.8; font-size: 0.9em;", "{rationale}" }
+                                    if let Some(b) = blocked {
+                                        span { style: "opacity: 0.6; font-style: italic; font-size: 0.9em;", "— {b}" }
+                                    }
+                                }
+                            }
+                        }
+                    }
+                    if pentest {
+                        div { style: "margin-top: 6px; opacity: 0.75; font-size: 0.85em;",
+                            "Active pentest is supported for this target type."
+                        }
+                    }
+                }
+            }
+        }
+        Some(None) => rsx! { div { style: "opacity: 0.6;", "Failed to load applicable scans." } },
+        None => rsx! { div { style: "opacity: 0.6;", "Loading scans..." } },
+    }
+}
+
+#[component]
+pub fn TargetsPage() -> Element {
+    let mut toasts = use_context::<Toasts>();
+    let mut scanning_ids = use_signal(Vec::<String>::new);
+    let mut expanded_ids = use_signal(Vec::<String>::new);
+    let mut confirm_delete = use_signal(|| Option::<(String, String)>::None);
+
+    // Edit-target modal state.
+    let mut edit_id = use_signal(|| Option::<String>::None);
+    let mut edit_name = use_signal(String::new);
+    let mut edit_type = use_signal(String::new);
+    let mut edit_arts = use_signal(Vec::<ArtifactInputDto>::new);
+    let mut edit_saving = use_signal(|| false);
+    // In-modal "add artifact" mini-form.
+    let mut e_kind = use_signal(|| "git_repo".to_string());
+    let mut e_source = use_signal(String::new);
+    let mut e_branch = use_signal(|| "main".to_string());
+
+    let mut targets = use_resource(move || async move { fetch_targets().await.ok() });
+
+    rsx! {
+        PageHeader {
+            title: "Targets",
+            description: "Onboarded targets and what their scans found. Add new targets from Onboard.",
+        }
+
+        div { style: "margin-bottom: 16px; display: flex; gap: 8px;",
+            Link { to: crate::app::Route::OnboardingPage {}, class: "btn btn-primary",
+                "+ Onboard a target"
+            }
+            button {
+                class: "btn btn-secondary",
+                onclick: move |_| targets.restart(),
+                "Refresh"
+            }
+        }
+
+        // ── Delete confirmation ──
+        if let Some((del_id, del_name)) = confirm_delete() {
+            div { class: "modal-overlay",
+                div { class: "modal-dialog",
+                    h3 { "Delete Target" }
+                    p { "Delete " strong { "{del_name}" } "?" }
+                    p { class: "modal-warning",
+                        "This permanently removes the target and its findings, SBOM entries, scan runs, and CVE alerts."
+                    }
+                    div { class: "modal-actions",
+                        button {
+                            class: "btn btn-secondary",
+                            onclick: move |_| confirm_delete.set(None),
+                            "Cancel"
+                        }
+                        button {
+                            class: "btn btn-danger",
+                            onclick: move |_| {
+                                let id = del_id.clone();
+                                let name = del_name.clone();
+                                confirm_delete.set(None);
+                                spawn(async move {
+                                    match delete_target(id).await {
+                                        Ok(_) => {
+                                            toasts.push(ToastType::Success, format!("{name} deleted"));
+                                            targets.restart();
+                                        }
+                                        Err(e) => toasts.push(ToastType::Error, e.to_string()),
+                                    }
+                                });
+                            },
+                            "Delete"
+                        }
+                    }
+                }
+            }
+        }
+
+        // ── Edit target ──
+        if let Some(eid) = edit_id() {
+            {
+            let name_err = validate_target_name(&edit_name());
+            let e_source_err = if e_source().is_empty() {
+                None
+            } else {
+                validate_artifact_ref(&e_kind(), &e_source())
+            };
+            rsx! {
+                div { class: "modal-overlay",
+                    div { class: "modal-dialog",
+                        h3 { "Edit target" }
+                        div { class: "form-group",
+                            label { "Name" }
+                            input {
+                                r#type: "text",
+                                value: "{edit_name}",
+                                oninput: move |e| edit_name.set(e.value()),
+                            }
+                            if !edit_name().is_empty() {
+                                if let Some(err) = name_err.clone() {
+                                    div { style: "color: var(--danger, #d33); font-size: 0.85em;", "{err}" }
+                                }
+                            }
+                        }
+                        div { class: "form-group",
+                            label { "Type" }
+                            select {
+                                value: "{edit_type}",
+                                oninput: move |e| edit_type.set(e.value()),
+                                for (v, l) in TARGET_TYPES.iter().copied() {
+                                    option { value: "{v}", "{l}" }
+                                }
+                            }
+                        }
+                        label { style: "font-weight: 600;", "Artifacts" }
+                        for (i, a) in edit_arts().iter().enumerate() {
+                            div { style: "display: flex; justify-content: space-between; align-items: center; padding: 4px 0;",
+                                span { style: "font-size: 0.9em;",
+                                    span { style: "opacity: 0.7;", "{a.kind}: " }
+                                    span { style: "font-family: monospace;", "{a.source_ref}" }
+                                }
+                                button {
+                                    class: "btn btn-ghost btn-ghost-danger btn-sm",
+                                    onclick: move |_| { edit_arts.write().remove(i); },
+                                    "Remove"
+                                }
+                            }
+                        }
+                        div { style: "display: flex; gap: 8px; align-items: flex-end; margin-top: 8px;",
+                            div { class: "form-group", style: "margin: 0;",
+                                label { "Kind" }
+                                select {
+                                    value: "{e_kind}",
+                                    oninput: move |e| e_kind.set(e.value()),
+                                    for (v, l) in ARTIFACT_KINDS.iter().copied() {
+                                        option { value: "{v}", "{l}" }
+                                    }
+                                }
+                            }
+                            div { class: "form-group", style: "margin: 0; flex: 1;",
+                                label { "Reference" }
+                                input {
+                                    r#type: "text",
+                                    value: "{e_source}",
+                                    oninput: move |e| e_source.set(e.value()),
+                                }
+                            }
+                            if e_kind() == "git_repo" {
+                                div { class: "form-group", style: "margin: 0;",
+                                    label { "Branch" }
+                                    input {
+                                        r#type: "text",
+                                        value: "{e_branch}",
+                                        oninput: move |e| e_branch.set(e.value()),
+                                    }
+                                }
+                            }
+                            button {
+                                class: "btn btn-secondary",
+                                disabled: e_source().trim().is_empty() || e_source_err.is_some(),
+                                onclick: move |_| {
+                                    let kind = e_kind();
+                                    if !e_source().trim().is_empty()
+                                        && validate_artifact_ref(&kind, &e_source()).is_none()
+                                    {
+                                        let branch = if kind == "git_repo" { Some(e_branch()) } else { None };
+                                        edit_arts.write().push(ArtifactInputDto {
+                                            kind,
+                                            source_ref: e_source(),
+                                            branch,
+                                            plc_format: None,
+                                        });
+                                        e_source.set(String::new());
+                                    }
+                                },
+                                "+ Add"
+                            }
+                        }
+                        if let Some(err) = e_source_err.clone() {
+                            div { style: "color: var(--danger, #d33); font-size: 0.85em;", "{err}" }
+                        }
+                        div { class: "modal-actions",
+                            button {
+                                class: "btn btn-secondary",
+                                onclick: move |_| edit_id.set(None),
+                                "Cancel"
+                            }
+                            button {
+                                class: "btn btn-primary",
+                                disabled: edit_saving() || name_err.is_some(),
+                                onclick: move |_| {
+                                    let id = eid.clone();
+                                    let nm = edit_name();
+                                    let tt = edit_type();
+                                    let arts = edit_arts();
+                                    edit_saving.set(true);
+                                    spawn(async move {
+                                        match update_target(id, Some(nm), Some(tt), Some(arts)).await {
+                                            Ok(_) => {
+                                                toasts.push(ToastType::Success, "Target updated");
+                                                targets.restart();
+                                                edit_id.set(None);
+                                            }
+                                            Err(e) => toasts.push(ToastType::Error, e.to_string()),
+                                        }
+                                        edit_saving.set(false);
+                                    });
+                                },
+                                if edit_saving() { "Saving..." } else { "Save" }
+                            }
+                        }
+                    }
+                }
+            }
+            }
+        }
+
+        {
+        let targets_snapshot = targets.read().clone();
+        match &targets_snapshot {
+            Some(Some(resp)) => {
+                let rows = resp.data.clone();
+                if rows.is_empty() {
+                    rsx! {
+                        div { class: "card", style: "padding: 24px; text-align: center;",
+                            p { style: "opacity: 0.7;", "No targets yet." }
+                            Link { to: crate::app::Route::OnboardingPage {}, class: "btn btn-primary",
+                                "Onboard your first target"
+                            }
+                        }
+                    }
+                } else {
+                    rsx! {
+                        div { class: "card",
+                            div { class: "table-wrapper",
+                                table {
+                                    thead {
+                                        tr {
+                                            th { "Name" }
+                                            th { "Type" }
+                                            th { "Detected" }
+                                            th { "Artifacts" }
+                                            th { "Findings" }
+                                            th { "Actions" }
+                                        }
+                                    }
+                                    tbody {
+                                        for t in rows {
+                                            {
+                                                let id = target_id(&t);
+                                                let name = str_at(&t, "name").to_string();
+                                                let ttype = pretty_type(str_at(&t, "target_type"));
+                                                let suggested = t
+                                                    .get("classification")
+                                                    .and_then(|c| c.get("suggested"))
+                                                    .and_then(|s| s.as_str())
+                                                    .map(pretty_type);
+                                                let artifacts = t
+                                                    .get("artifacts")
+                                                    .and_then(|a| a.as_array())
+                                                    .cloned()
+                                                    .unwrap_or_default();
+                                                let findings = t
+                                                    .get("findings_count")
+                                                    .and_then(|n| n.as_u64())
+                                                    .unwrap_or(0);
+                                                let facts = t
+                                                    .get("classification")
+                                                    .and_then(|c| c.get("facts"))
+                                                    .and_then(|f| f.as_array())
+                                                    .cloned()
+                                                    .unwrap_or_default();
+                                                let is_scanning = scanning_ids().contains(&id);
+                                                let is_expanded = expanded_ids().contains(&id);
+                                                let id_scan = id.clone();
+                                                let id_exp = id.clone();
+                                                let id_del = id.clone();
+                                                let id_edit = id.clone();
+                                                let name_del = name.clone();
+                                                let name_edit = name.clone();
+                                                let ttype_raw = str_at(&t, "target_type").to_string();
+                                                let artifacts_detail = artifacts.clone();
+                                                let artifacts_edit = artifacts.clone();
+                                                rsx! {
+                                                    tr {
+                                                        td { strong { "{name}" } }
+                                                        td { "{ttype}" }
+                                                        td {
+                                                            if let Some(sug) = suggested.clone() {
+                                                                span { class: "badge badge-success", "{sug}" }
+                                                            } else {
+                                                                span { style: "opacity: 0.5;", "—" }
+                                                            }
+                                                        }
+                                                        td { "{artifacts.len()}" }
+                                                        td { "{findings}" }
+                                                        td { style: "display: flex; gap: 4px;",
+                                                            button {
+                                                                class: "btn btn-ghost",
+                                                                title: "Details",
+                                                                onclick: move |_| {
+                                                                    let mut ids = expanded_ids();
+                                                                    if ids.contains(&id_exp) {
+                                                                        ids.retain(|i| i != &id_exp);
+                                                                    } else {
+                                                                        ids.push(id_exp.clone());
+                                                                    }
+                                                                    expanded_ids.set(ids);
+                                                                },
+                                                                Icon { icon: BsInfoCircle, width: 16, height: 16 }
+                                                            }
+                                                            button {
+                                                                class: "btn btn-ghost",
+                                                                title: "Edit target",
+                                                                onclick: move |_| {
+                                                                    edit_name.set(name_edit.clone());
+                                                                    edit_type.set(ttype_raw.clone());
+                                                                    let arts: Vec<ArtifactInputDto> = artifacts_edit
+                                                                        .iter()
+                                                                        .map(|a| ArtifactInputDto {
+                                                                            kind: str_at(a, "kind").to_string(),
+                                                                            source_ref: str_at(a, "source_ref").to_string(),
+                                                                            branch: a
+                                                                                .get("git")
+                                                                                .and_then(|g| g.get("default_branch"))
+                                                                                .and_then(|b| b.as_str())
+                                                                                .map(String::from),
+                                                                            plc_format: None,
+                                                                        })
+                                                                        .collect();
+                                                                    edit_arts.set(arts);
+                                                                    e_source.set(String::new());
+                                                                    edit_id.set(Some(id_edit.clone()));
+                                                                },
+                                                                Icon { icon: BsPencil, width: 16, height: 16 }
+                                                            }
+                                                            button {
+                                                                class: if is_scanning { "btn btn-ghost btn-scanning" } else { "btn btn-ghost" },
+                                                                title: "Run scan",
+                                                                disabled: is_scanning,
+                                                                onclick: move |_| {
+                                                                    let id = id_scan.clone();
+                                                                    let mut ids = scanning_ids();
+                                                                    ids.push(id.clone());
+                                                                    scanning_ids.set(ids);
+                                                                    spawn(async move {
+                                                                        match trigger_target_scan(id.clone()).await {
+                                                                            Ok(_) => toasts.push(ToastType::Success, "Scan triggered — findings appear as it runs. Use Refresh."),
+                                                                            Err(e) => toasts.push(ToastType::Error, e.to_string()),
+                                                                        }
+                                                                        let mut ids = scanning_ids();
+                                                                        ids.retain(|i| i != &id);
+                                                                        scanning_ids.set(ids);
+                                                                    });
+                                                                },
+                                                                if is_scanning {
+                                                                    span { class: "spinner" }
+                                                                } else {
+                                                                    Icon { icon: BsPlayCircle, width: 16, height: 16 }
+                                                                }
+                                                            }
+                                                            button {
+                                                                class: "btn btn-ghost btn-ghost-danger",
+                                                                title: "Delete target",
+                                                                onclick: move |_| {
+                                                                    confirm_delete.set(Some((id_del.clone(), name_del.clone())));
+                                                                },
+                                                                Icon { icon: BsTrash, width: 16, height: 16 }
+                                                            }
+                                                        }
+                                                    }
+                                                    if is_expanded {
+                                                        tr {
+                                                            td { colspan: "6",
+                                                                div { style: "padding: 12px 8px;",
+                                                                    h4 { style: "margin: 0 0 6px;", "Artifacts" }
+                                                                    if artifacts_detail.is_empty() {
+                                                                        div { style: "opacity: 0.6;", "No artifacts." }
+                                                                    }
+                                                                    for a in artifacts_detail {
+                                                                        div { style: "font-size: 0.9em; padding: 2px 0;",
+                                                                            span { style: "opacity: 0.7;", "{str_at(&a, \"kind\")}: " }
+                                                                            span { style: "font-family: monospace;", "{str_at(&a, \"source_ref\")}" }
+                                                                        }
+                                                                    }
+                                                                    if !facts.is_empty() {
+                                                                        h4 { style: "margin: 12px 0 6px;", "Detected facts" }
+                                                                        for f in facts {
+                                                                            div { style: "font-size: 0.9em; padding: 2px 0;",
+                                                                                span { style: "font-family: monospace;", "{str_at(&f, \"key\")}={str_at(&f, \"value\")}" }
+                                                                                span { style: "opacity: 0.5;", " ({str_at(&f, \"source\")})" }
+                                                                            }
+                                                                        }
+                                                                    }
+                                                                    h4 { style: "margin: 12px 0 6px;", "Applicable scans" }
+                                                                    TargetScans { id: id.clone() }
+                                                                }
+                                                            }
+                                                        }
+                                                    }
+                                                }
+                                            }
+                                        }
+                                    }
+                                }
+                            }
+                        }
+                    }
+                }
+            }
+            Some(None) => rsx! {
+                div { class: "card", p { "Failed to load targets." } }
+            },
+            None => rsx! {
+                div { class: "loading", "Loading targets..." }
+            },
+        }
+        }
+    }
+}

docker/agent-entrypoint.sh

@@ -0,0 +1,19 @@
+#!/usr/bin/env bash
+# Seed the nix store on first start, then run the agent.
+#
+# The firmware-SBOM pipeline drives a real `nix` build (tramiton NixBackend).
+# The image ships the store as a bootstrap tarball rather than baking /nix, so a
+# persistent /nix volume (mounted empty on first deploy) gets populated once and
+# then survives redeploys. Seeding is best-effort: if it fails, the agent still
+# starts and firmware SBOMs fall back to analysis-only.
+if [ ! -e /nix/store ]; then
+  echo "agent-entrypoint: seeding /nix store from image bootstrap..."
+  mkdir -p /nix
+  if tar -C / -xzf /opt/nix-bootstrap.tar.gz; then
+    echo "agent-entrypoint: /nix store seeded."
+  else
+    echo "agent-entrypoint: WARN nix seed failed; firmware SBOM will use analysis-only fallback."
+  fi
+fi
+
+exec compliance-agent "$@"

examples/plc-demo/conveyor.xml

@@ -0,0 +1,36 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!-- Demo PLCopen project — conveyor sorter. Deliberately vulnerable. -->
+<project xmlns="http://www.plcopen.org/xml/tc6_0201">
+  <types>
+    <pous>
+      <pou name="ConveyorCtrl" pouType="program">
+        <interface>
+          <localVars>
+            <variable name="AdminPwd">
+              <type><string/></type>
+              <initialValue><simpleValue value="password"/></initialValue>
+            </variable>
+            <variable name="Belt">
+              <type>
+                <array>
+                  <dimension lower="0" upper="3"/>
+                  <baseType><INT/></baseType>
+                </array>
+              </type>
+            </variable>
+          </localVars>
+          <inputVars>
+            <variable name="Slot"><type><INT/></type></variable>
+          </inputVars>
+        </interface>
+        <body>
+          <ST>
+            <xhtml xmlns="http://www.w3.org/1999/xhtml">Belt[Slot] := 1;
+Ftp_Send(HOST := '192.168.1.5', PORT := 21, ENCRYPT := FALSE);
+</xhtml>
+          </ST>
+        </body>
+      </pou>
+    </pous>
+  </types>
+</project>

examples/plc-demo/pump_station.st

@@ -0,0 +1,57 @@
+(*
+ * Demo PLC program — pump-station control (IEC 61131-3 Structured Text).
+ *
+ * Deliberately vulnerable, for the compliance-scanner PLC control-logic demo.
+ * Each issue below is flagged by pipeline::plc::rules.
+ *)
+
+FUNCTION_BLOCK PumpStationCtrl
+VAR_INPUT
+    OperatorCmd   : INT;        (* HMI command index — untrusted *)
+    FlowSetpoint  : REAL;
+END_VAR
+VAR_OUTPUT
+    PumpSpeed     : REAL;
+    Fault         : BOOL;
+END_VAR
+VAR
+    HmiPassword     : STRING := 'admin123';        (* hardcoded + default credential *)
+    ApiKey          : STRING := 'sk_live_9c1f2a';   (* hardcoded secret *)
+    PumpProfiles    : ARRAY[0..7] OF REAL;
+    Safety_Enable   : BOOL := TRUE;
+    Watchdog_Kick   : INT := 1;
+    MeasuredFlow    : REAL;
+    ScaleFactor     : REAL;
+    i               : INT;
+END_VAR
+
+    (* Operator can index the profile table with an unvalidated command. *)
+    PumpSpeed := PumpProfiles[OperatorCmd];
+
+    (* Divisor is a live process value that can read zero on a stopped line. *)
+    ScaleFactor := FlowSetpoint / MeasuredFlow;
+
+    (* Safety interlock disabled straight from application logic. *)
+    IF OperatorCmd = 99 THEN
+        Safety_Enable := FALSE;
+        Watchdog_Kick := 0;
+    END_IF;
+
+    (* Unauthenticated Modbus/TCP link on the cleartext OT port. *)
+    Modbus_TCP_Connect(IP := '10.10.5.20', PORT := 502, AUTH := FALSE, PASSWORD := 'plc');
+
+    (* Unstructured jump around the fault handler. *)
+    IF MeasuredFlow > 1000.0 THEN
+        JMP trip;
+    END_IF;
+
+    (* A correctly guarded division — must NOT be flagged. *)
+    IF ScaleFactor <> 0.0 THEN
+        PumpSpeed := PumpSpeed / ScaleFactor;
+    END_IF;
+
+    RETURN;
+trip:
+    Fault := TRUE;
+    PumpSpeed := 0.0;
+END_FUNCTION_BLOCK

examples/plc-demo/traffic_light.st

@@ -0,0 +1,92 @@
+(*
+ * Pedestrian-crossing traffic-light controller.
+ *
+ * Structure adapted from the classic OpenPLC "traffic light" example
+ * (github.com/thiagoralves/OpenPLC_v3 examples) — a timed state machine
+ * driving vehicle + pedestrian lamps, extended with a SCADA/Modbus link
+ * and a maintenance override so it reads like a real deployed program.
+ *
+ * The control logic itself is sound; the security-relevant defects are the
+ * kind that slip into field code under deadline: a hardcoded SCADA password,
+ * a cleartext Modbus/TCP master, and a maintenance mode that drops the
+ * pedestrian safety permit. Everything else should stay quiet.
+ *)
+PROGRAM TrafficLight
+VAR
+    State        : INT := 0;      (* 0 GreenVeh, 1 Amber, 2 RedVeh/WalkPed, 3 FlashPed *)
+    Tmr          : TON;
+    StateElapsed : TIME;
+    CycleMs      : DINT := 0;
+
+    (* Lamp outputs *)
+    VehGreen     : BOOL := FALSE;
+    VehAmber     : BOOL := FALSE;
+    VehRed       : BOOL := FALSE;
+    PedWalk      : BOOL := FALSE;
+    PedStop      : BOOL := TRUE;
+
+    (* Pedestrian safety permit — must be TRUE before the WALK phase asserts *)
+    PedPermit    : BOOL := TRUE;
+    PedButton    : BOOL := FALSE;
+
+    (* SCADA / remote monitoring *)
+    ScadaUser    : STRING := 'operator';
+    ScadaPassword    : STRING := 'Tr@ffic2019';   (* hardcoded SCADA credential *)
+    ModbusReady  : BOOL := FALSE;
+
+    (* Maintenance override *)
+    MaintMode    : BOOL := FALSE;
+    LampCount    : INT := 5;
+    DutyPct      : INT;
+END_VAR
+
+(* ---- SCADA uplink: publish state to the control room over Modbus/TCP ---- *)
+IF NOT ModbusReady THEN
+    Modbus_TCP_Master(IP := '10.20.0.5', PORT := 502, AUTH := FALSE, USER := ScadaUser, PASS := ScadaPassword);
+    ModbusReady := TRUE;
+END_IF;
+
+(* ---- Duty-cycle for the flashing pedestrian lamp (guarded division) ---- *)
+IF LampCount <> 0 THEN
+    DutyPct := (CycleMs * 100) / LampCount;
+END_IF;
+
+(* ---- Maintenance override: flash amber, hand control to the technician ---- *)
+IF MaintMode THEN
+    VehGreen := FALSE;
+    VehRed   := FALSE;
+    VehAmber := NOT VehAmber;
+    PedPermit := FALSE;      (* drops the pedestrian safety permit in code *)
+    PedWalk  := FALSE;
+    PedStop  := TRUE;
+ELSE
+    (* ---- Normal timed state machine ---- *)
+    Tmr(IN := TRUE, PT := T#5s);
+    StateElapsed := Tmr.ET;
+
+    CASE State OF
+        0:  (* vehicles go, pedestrians stop *)
+            VehGreen := TRUE; VehAmber := FALSE; VehRed := FALSE;
+            PedWalk := FALSE; PedStop := TRUE;
+            IF PedButton AND Tmr.Q THEN
+                State := 1; Tmr(IN := FALSE);
+            END_IF;
+        1:  (* amber transition *)
+            VehGreen := FALSE; VehAmber := TRUE;
+            IF Tmr.Q THEN State := 2; Tmr(IN := FALSE); END_IF;
+        2:  (* vehicles stop, pedestrians walk — only if permitted *)
+            VehAmber := FALSE; VehRed := TRUE;
+            IF PedPermit THEN
+                PedWalk := TRUE; PedStop := FALSE;
+            END_IF;
+            IF Tmr.Q THEN State := 3; Tmr(IN := FALSE); END_IF;
+        3:  (* flashing don't-walk before returning to green *)
+            PedWalk := NOT PedWalk;
+            IF Tmr.Q THEN
+                State := 0; PedButton := FALSE; Tmr(IN := FALSE);
+            END_IF;
+    ELSE
+        State := 0;
+    END_CASE;
+END_IF;
+END_PROGRAM