fix(onboarding): targets visibility + unified pipeline by default

The onboarding wizard created OnboardedTargets that were invisible in the
dashboard, and triggering a scan failed with "Repository <id> not found":
`/targets/{id}/scan` went through `run_scan`, which consulted the global
`unified_pipeline` flag and fell to the legacy repository pipeline (reads
`repositories`, not `onboarded_targets`).

Agent
- Add `ComplianceAgent::run_target_scan`, always dispatching to the unified
  `run_target` pipeline. The target-scan endpoint operates on
  `onboarded_targets` by construction, so it must not depend on the
  transition flag. `trigger_target_scan` now calls it.
- Default `UNIFIED_PIPELINE` to on (no legacy `repositories` data in prod);
  set `UNIFIED_PIPELINE=0` to opt back to the legacy pipeline.
- Scheduler now scans `onboarded_targets` (via `run_target_scan`) instead of
  the legacy `repositories` collection.

Dashboard
- New Targets page (`/targets`): lists onboarded targets with detected type,
  artifacts, findings count, applicable-scans matrix (on expand), plus Run
  scan and Delete. Sidebar "Repositories" nav becomes "Targets".
- Remove the "Add Repository" form from the Repositories page — onboarding
  is the single entry point (private-repo auth + issue tracker move into the
  onboarding flow, revisable on the target).
- Add `delete_target` server fn.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

Cargo.lock

@@ -693,7 +693,6 @@ dependencies = [
  "tracing",
  "tracing-subscriber",
  "tramiton-core",
- "tramiton-repro",
  "urlencoding",
  "uuid",
  "walkdir",
@@ -2102,7 +2101,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb"
 dependencies = [
  "libc",
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -3697,7 +3696,7 @@ version = "0.50.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "7957b9740744892f114936ab4a57b3f487491bbeafaf8083688b16841a4240e5"
 dependencies = [
- "windows-sys 0.59.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -4682,7 +4681,7 @@ dependencies = [
  "errno",
  "libc",
  "linux-raw-sys 0.12.1",
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -5560,10 +5559,10 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "82a72c767771b47409d2345987fda8628641887d5466101319899796367354a0"
 dependencies = [
  "fastrand",
- "getrandom 0.3.4",
+ "getrandom 0.4.1",
  "once_cell",
  "rustix 1.1.4",
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -6150,20 +6149,6 @@ dependencies = [
  "walkdir",
 ]
 
-[[package]]
-name = "tramiton-repro"
-version = "0.4.0"
-source = "git+ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git?tag=v0.4.0#e3dc1bf7027a2f6d7b1fe43043d6dfa887ce4af3"
-dependencies = [
- "serde",
- "sha2",
- "tempfile",
- "thiserror 1.0.69",
- "toml",
- "tramiton-core",
- "walkdir",
-]
-
 [[package]]
 name = "tree-sitter"
 version = "0.24.7"
@@ -6722,7 +6707,7 @@ version = "0.1.11"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c2a7b1c03c876122aa43f3020e6c3c3ee5c05081c9a00739faf7503aeba10d22"
 dependencies = [
- "windows-sys 0.48.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]

compliance-agent/Cargo.toml

@@ -15,9 +15,6 @@ compliance-dast = { path = "../compliance-dast" }
 # available to the onboarding classifier. NOTE: CI must be able to fetch this
 # private repo (see the git-auth step in .gitea/workflows/ci.yml).
 tramiton-core = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.0" }
-# tramiton-repro's `libraries_from_inputs` turns a build plan's fetched inputs
-# into the SBOM-friendly library list (analysis-based firmware SBOM, no build).
-tramiton-repro = { git = "ssh://git@gitea.meghsakha.com:22222/sharang/tramiton.git", tag = "v0.4.0" }
 serde = { workspace = true }
 serde_json = { workspace = true }
 tokio = { workspace = true }

compliance-agent/src/pipeline/firmware_sbom.rs

@@ -1,81 +0,0 @@
-//! Analysis-based firmware SBOM.
-//!
-//! Derives a Software Bill of Materials for a firmware / embedded target from
-//! tramiton's build-plan analysis — the resolved external libraries and the
-//! cross-toolchain — *without* running a reproducible build. It reuses the same
-//! `tramiton_core::provider::analyze` pass classification runs, so an SBOM comes
-//! out of the source tree with no binary upload and no build toolchain in the
-//! agent image.
-//!
-//! A full reproducible-build SBOM (with artifact-level content hashes from a
-//! sealed `tramiton.lock`) is a later, opt-in phase — it needs tramiton's nix
-//! build backend available to the agent.
-
-use std::path::Path;
-
-use compliance_core::models::{SbomEntry, TargetType};
-
-/// Whether analysis-based firmware SBOM applies to this target family.
-pub fn is_firmware_target(target_type: TargetType) -> bool {
-    matches!(
-        target_type,
-        TargetType::FirmwareBareMetal | TargetType::FirmwareRtos | TargetType::EmbeddedLinuxYocto
-    )
-}
-
-/// Build SBOM entries for a firmware target by analyzing its source tree with
-/// tramiton. Returns an empty vector when tramiton cannot form a build plan
-/// (e.g. no recognizable embedded build system), so callers can treat "no
-/// firmware SBOM" as simply an empty result.
-pub async fn firmware_sbom_entries(path: &Path, repo_id: &str) -> Vec<SbomEntry> {
-    let p = path.to_path_buf();
-    // `analyze` is CPU-bound source inspection — keep it off the async runtime.
-    let plan = match tokio::task::spawn_blocking(move || {
-        let repo = tramiton_core::Repo::new(&p);
-        tramiton_core::provider::analyze(&repo)
-    })
-    .await
-    {
-        Ok(Ok(plan)) => plan,
-        Ok(Err(e)) => {
-            tracing::warn!(repo_id, error = %e, "Firmware SBOM: tramiton analyze failed");
-            return Vec::new();
-        }
-        Err(e) => {
-            tracing::warn!(repo_id, error = %e, "Firmware SBOM: analyze task join error");
-            return Vec::new();
-        }
-    };
-    let Some(bp) = plan else {
-        return Vec::new();
-    };
-
-    let mut entries = Vec::new();
-
-    // The cross-toolchain, recorded as a component so the SBOM captures how the
-    // firmware is built (arm-none-eabi-gcc, zephyr-sdk, ...).
-    if let Some(id) = bp.toolchain.id.clone() {
-        let version = bp.toolchain.version.clone().unwrap_or_default();
-        entries.push(SbomEntry::new(
-            repo_id.to_string(),
-            id,
-            version,
-            "toolchain".to_string(),
-        ));
-    }
-
-    // Resolved external libraries — the SBOM-friendly view of the plan's fetched
-    // build inputs (name @ revision, with the upstream source when known).
-    for lib in tramiton_repro::lock::libraries_from_inputs(&bp.inputs) {
-        let mut entry = SbomEntry::new(
-            repo_id.to_string(),
-            lib.name,
-            lib.revision,
-            "tramiton".to_string(),
-        );
-        entry.purl = lib.source;
-        entries.push(entry);
-    }
-
-    entries
-}

compliance-agent/src/pipeline/mod.rs

@@ -1,7 +1,6 @@
 pub mod code_review;
 pub mod cve;
 pub mod dedup;
-pub mod firmware_sbom;
 pub mod git;
 pub mod gitleaks;
 mod graph_build;

compliance-agent/src/pipeline/orchestrator.rs

@@ -461,25 +461,6 @@ impl PipelineOrchestrator {
                         } },
                     )
                     .await?;
-                // Refresh the target's cached findings count. The shared pipeline
-                // (Stage 7) increments `repositories`, which the unified path does
-                // not use, so set the accurate total on the target itself.
-                let total = self
-                    .db
-                    .findings()
-                    .count_documents(doc! { "repo_id": target_id })
-                    .await
-                    .unwrap_or(*count as u64);
-                self.db
-                    .onboarded_targets()
-                    .update_one(
-                        doc! { "_id": oid },
-                        doc! { "$set": {
-                            "findings_count": total as i64,
-                            "updated_at": mongodb::bson::DateTime::now(),
-                        } },
-                    )
-                    .await?;
             }
             Err(e) => {
                 tracing::error!(target_id, error = %e, "Unified scan pipeline failed");
@@ -601,47 +582,6 @@ impl PipelineOrchestrator {
                 tracing::warn!(target_id, error = %e, "Unified pipeline: classification failed")
             }
         }
-
-        // Analysis-based firmware SBOM: for embedded targets, derive components
-        // (resolved libraries + cross-toolchain) from tramiton's build-plan
-        // analysis over the already-ingested source — no build, no binary
-        // upload. Best-effort; empty when no build plan forms.
-        if crate::pipeline::firmware_sbom::is_firmware_target(target.target_type) {
-            if let Some(code) = target.code_artifact() {
-                if let Some(path) = working_paths.get(&code.id) {
-                    let entries =
-                        crate::pipeline::firmware_sbom::firmware_sbom_entries(path, target_id)
-                            .await;
-                    if !entries.is_empty() {
-                        let _ = self
-                            .db
-                            .sbom_entries()
-                            .delete_many(doc! { "repo_id": target_id })
-                            .await;
-                        for entry in &entries {
-                            let filter = doc! {
-                                "repo_id": &entry.repo_id,
-                                "name": &entry.name,
-                                "version": &entry.version,
-                            };
-                            if let Ok(d) = mongodb::bson::to_document(entry) {
-                                let _ = self
-                                    .db
-                                    .sbom_entries()
-                                    .update_one(filter, doc! { "$set": d })
-                                    .upsert(true)
-                                    .await;
-                            }
-                        }
-                        tracing::info!(
-                            target_id,
-                            count = entries.len(),
-                            "Firmware SBOM: stored components from tramiton analysis"
-                        );
-                    }
-                }
-            }
-        }
     }
 
     /// If the target has a `LiveUrl` artifact and DAST is planned, provision a

compliance-dashboard/src/pages/findings.rs

@@ -20,7 +20,7 @@ pub fn FindingsPage() -> Element {
     let mut selected_ids = use_signal(Vec::<String>::new);
 
     let repos = use_resource(|| async {
-        crate::infrastructure::onboarding::fetch_targets()
+        crate::infrastructure::repositories::fetch_repositories(1)
             .await
             .ok()
     });
@@ -86,14 +86,14 @@ pub fn FindingsPage() -> Element {
             }
             select {
                 onchange: move |e| { repo_filter.set(e.value()); page.set(1); },
-                option { value: "", "All Targets" }
+                option { value: "", "All Repositories" }
                 {
                     match &*repos.read() {
                         Some(Some(resp)) => rsx! {
-                            for t in &resp.data {
+                            for repo in &resp.data {
                                 {
-                                    let id = t.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
+                                    let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
-                                    let name = t.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
+                                    let name = repo.name.clone();
                                     rsx! {
                                         option { value: "{id}", "{name}" }
                                     }

compliance-dashboard/src/pages/sbom.rs

@@ -28,9 +28,9 @@ pub fn SbomPage() -> Element {
     let mut diff_repo_a = use_signal(String::new);
     let mut diff_repo_b = use_signal(String::new);
 
-    // ── Targets for dropdowns ──
+    // ── Repos for dropdowns ──
     let repos = use_resource(|| async {
-        crate::infrastructure::onboarding::fetch_targets()
+        crate::infrastructure::repositories::fetch_repositories(1)
             .await
             .ok()
     });
@@ -114,14 +114,14 @@ pub fn SbomPage() -> Element {
                 select {
                     class: "sbom-filter-select",
                     onchange: move |e| { repo_filter.set(e.value()); page.set(1); },
-                    option { value: "", "All Targets" }
+                    option { value: "", "All Repositories" }
                     {
                         match &*repos.read() {
                             Some(Some(resp)) => rsx! {
                                 for repo in &resp.data {
                                     {
-                                        let id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
+                                        let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
-                                        let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
+                                        let name = repo.name.clone();
                                         rsx! { option { value: "{id}", "{name}" } }
                                     }
                                 }
@@ -476,8 +476,8 @@ pub fn SbomPage() -> Element {
                                     Some(Some(resp)) => rsx! {
                                         for repo in &resp.data {
                                             {
-                                                let id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
+                                                let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
-                                                let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
+                                                let name = repo.name.clone();
                                                 rsx! { option { value: "{id}", "{name}" } }
                                             }
                                         }
@@ -498,8 +498,8 @@ pub fn SbomPage() -> Element {
                                     Some(Some(resp)) => rsx! {
                                         for repo in &resp.data {
                                             {
-                                                let id = repo.get("_id").and_then(|o| o.get("$oid")).and_then(|s| s.as_str()).unwrap_or_default().to_string();
+                                                let id = repo.id.as_ref().map(|id| id.to_hex()).unwrap_or_default();
-                                                let name = repo.get("name").and_then(|n| n.as_str()).unwrap_or_default().to_string();
+                                                let name = repo.name.clone();
                                                 rsx! { option { value: "{id}", "{name}" } }
                                             }
                                         }